Wall clock time and date at job start Fri Apr 10 2020 15:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48497 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46919 * 299.99549 * 3 2 1 6 6 H 1.48498 * 109.46943 * 59.99427 * 3 2 1 7 7 C 1.39902 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99941 * 178.54008 * 7 2 1 9 9 N 1.35800 * 120.00287 * 358.53616 * 7 2 1 10 10 C 1.46500 * 120.00033 * 341.96212 * 9 7 2 11 11 C 1.50695 * 109.47039 * 84.93633 * 10 9 7 12 12 O 1.20826 * 120.00347 * 0.02562 * 11 10 9 13 13 O 1.34237 * 120.00075 * 179.97438 * 11 10 9 14 14 C 1.34773 * 120.00110 * 161.95910 * 9 7 2 15 15 O 1.21573 * 119.99868 * 7.87496 * 14 9 7 16 16 C 1.48375 * 120.00377 * 187.87378 * 14 9 7 17 17 O 1.21771 * 119.99501 * 6.14199 * 16 14 9 18 18 C 1.41296 * 120.00586 * 186.41549 * 16 14 9 19 19 C 1.35654 * 120.00325 * 172.46370 * 18 16 14 20 20 C 1.46791 * 120.00082 * 347.62821 * 19 18 16 21 21 C 1.40100 * 120.16014 * 313.87159 * 20 19 18 22 22 C 1.37713 * 119.83745 * 179.76599 * 21 20 19 23 23 C 1.38755 * 120.15981 * 0.50825 * 22 21 20 24 24 F 1.35100 * 119.83936 * 179.76287 * 23 22 21 25 25 C 1.38749 * 120.32451 * 359.74271 * 23 22 21 26 26 C 1.37722 * 120.15765 * 359.97438 * 25 23 22 27 27 H 0.97004 * 119.99790 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47242 * 204.93881 * 10 9 7 29 29 H 1.09001 * 109.46980 * 324.93742 * 10 9 7 30 30 H 0.96698 * 117.00249 * 179.97438 * 13 11 10 31 31 H 1.07999 * 119.99515 * 352.45875 * 18 16 14 32 32 H 1.07999 * 119.99678 * 167.62694 * 19 18 16 33 33 H 1.07997 * 120.07517 * 0.02562 * 21 20 19 34 34 H 1.07996 * 119.92271 * 180.22502 * 22 21 20 35 35 H 1.07998 * 119.92137 * 179.97438 * 25 23 22 36 36 H 1.08000 * 120.08194 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3963 -1.2126 6 1 1.8835 2.3964 1.2124 7 6 2.0077 -1.2116 0.0005 8 1 3.0874 -1.2119 -0.0233 9 7 1.3290 -2.3875 0.0311 10 6 -0.0729 -2.4132 0.4555 11 6 -0.9597 -2.0966 -0.7211 12 8 -0.4710 -1.8729 -1.8031 13 8 -2.2929 -2.0641 -0.5672 14 6 1.9452 -3.5308 -0.3290 15 8 3.1419 -3.5350 -0.5428 16 6 1.1630 -4.7843 -0.4644 17 8 -0.0500 -4.7592 -0.3603 18 6 1.8259 -6.0080 -0.7084 19 6 1.1316 -7.1730 -0.6804 20 6 -0.2316 -7.2021 -0.1367 21 6 -0.5189 -6.5649 1.0775 22 6 -1.8012 -6.5923 1.5791 23 6 -2.8051 -7.2577 0.8902 24 9 -4.0597 -7.2845 1.3906 25 6 -2.5270 -7.8954 -0.3103 26 6 -1.2505 -7.8715 -0.8269 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3183 -3.4035 0.8393 29 1 -0.2292 -1.6711 1.2384 30 1 -2.8203 -1.8561 -1.3505 31 1 2.8855 -6.0157 -0.9173 32 1 1.5817 -8.0791 -1.0582 33 1 0.2625 -6.0501 1.6167 34 1 -2.0249 -6.0985 2.5131 35 1 -3.3133 -8.4118 -0.8408 36 1 -1.0355 -8.3679 -1.7616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:36 Heat of formation + Delta-G solvation = -135.678457 kcal Electronic energy + Delta-G solvation = -27521.094655 eV Core-core repulsion = 23272.708930 eV Total energy + Delta-G solvation = -4248.385725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.089 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.86633 -41.94581 -40.66727 -39.83416 -38.82185 -37.20537 -36.32927 -34.79981 -33.78836 -32.10060 -30.65589 -29.66959 -27.96514 -26.08183 -24.07474 -23.58075 -22.77898 -21.98388 -19.76755 -19.23427 -18.81531 -18.61408 -18.25028 -17.67694 -17.47815 -17.11514 -16.78852 -16.53935 -16.21405 -15.94660 -15.90326 -15.42563 -15.15165 -14.87131 -14.51039 -14.34679 -14.19346 -14.09442 -13.78610 -13.64823 -13.35920 -13.08157 -12.84041 -12.62341 -12.51522 -12.15173 -12.10662 -11.98511 -11.82583 -11.51883 -11.06467 -10.74862 -10.16714 -10.09525 -9.92415 -9.06621 -8.57506 -6.12524 -0.75401 0.25397 0.44162 1.18058 1.36681 1.47248 1.53069 1.89500 2.08486 2.42415 2.50977 2.70395 2.74678 3.03772 3.32657 3.55309 3.69153 3.81358 3.96742 4.14039 4.29094 4.38621 4.49546 4.66021 4.77538 4.92304 4.94727 4.97472 5.04485 5.19228 5.20917 5.24255 5.37597 5.54128 5.68035 5.95454 6.01258 6.11050 6.42164 6.91514 7.09577 7.51049 7.71872 8.39819 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.004608 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.867540 B = 6074.950984 C = 7074.792571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.004 3.996 3 Si 1.010 2.990 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.335 4.335 8 H 0.095 0.905 9 N -0.394 5.394 10 C 0.142 3.858 11 C 0.530 3.470 12 O -0.569 6.569 13 O -0.522 6.522 14 C 0.371 3.629 15 O -0.608 6.608 16 C 0.371 3.629 17 O -0.454 6.454 18 C -0.238 4.238 19 C 0.027 3.973 20 C -0.095 4.095 21 C -0.046 4.046 22 C -0.165 4.165 23 C 0.087 3.913 24 F -0.148 7.148 25 C -0.161 4.161 26 C -0.067 4.067 27 H 0.284 0.716 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.408 0.592 31 H 0.149 0.851 32 H 0.190 0.810 33 H 0.119 0.881 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 -13.997 2.085 15.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.199 4.199 3 Si 0.831 3.169 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.463 4.463 8 H 0.113 0.887 9 N -0.112 5.112 10 C 0.018 3.982 11 C 0.374 3.626 12 O -0.460 6.460 13 O -0.333 6.333 14 C 0.161 3.839 15 O -0.496 6.496 16 C 0.253 3.747 17 O -0.333 6.333 18 C -0.257 4.257 19 C 0.009 3.991 20 C -0.095 4.095 21 C -0.065 4.065 22 C -0.184 4.184 23 C 0.068 3.932 24 F -0.127 7.127 25 C -0.179 4.179 26 C -0.085 4.085 27 H 0.096 0.904 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.266 0.734 31 H 0.167 0.833 32 H 0.207 0.793 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.174 0.826 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.548 -13.870 2.148 15.092 hybrid contribution -0.187 1.615 -0.520 1.707 sum -5.735 -12.255 1.628 13.629 Atomic orbital electron populations 1.69189 1.07527 1.29454 1.45713 1.26397 0.96400 1.03221 0.93858 0.84633 0.78289 0.75458 0.78481 1.18965 1.20461 1.18115 1.20021 0.93224 0.83190 1.49894 0.88737 1.43446 1.09491 1.06898 1.51339 1.21170 0.79186 1.04020 0.93863 1.22966 0.80531 0.69711 0.89422 1.90532 1.75912 1.49029 1.30506 1.84430 1.19791 1.83931 1.45194 1.20946 0.89250 0.87069 0.86593 1.90549 1.15714 1.86365 1.56986 1.21063 0.88688 0.90558 0.74408 1.90619 1.16018 1.88595 1.38091 1.22312 1.02533 0.91783 1.09079 1.23109 0.90445 0.98301 0.87245 1.19322 0.94816 0.99669 0.95724 1.21110 0.95969 0.94255 0.95132 1.21100 0.92709 1.02278 1.02328 1.18123 0.79176 1.00885 0.94978 1.91464 1.38833 1.94988 1.87434 1.21257 0.99112 1.02462 0.95100 1.21392 0.90773 0.96577 0.99733 0.90440 0.86369 0.86865 0.73364 0.83302 0.79321 0.86297 0.84148 0.82556 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.08 7.64 21.82 0.17 -44.91 16 2 C 0.00 0.22 5.25 85.25 0.45 0.67 16 3 Si 1.01 41.43 29.56 68.60 2.03 43.46 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.34 -18.76 9.30 84.48 0.79 -17.98 16 8 H 0.09 5.53 7.26 -2.91 -0.02 5.51 16 9 N -0.39 -20.89 2.13 -642.40 -1.37 -22.26 16 10 C 0.14 6.74 4.82 85.63 0.41 7.16 16 11 C 0.53 25.74 5.07 71.23 0.36 26.11 16 12 O -0.57 -32.10 16.37 21.97 0.36 -31.74 16 13 O -0.52 -20.88 13.42 -51.49 -0.69 -21.57 16 14 C 0.37 18.86 7.60 86.94 0.66 19.52 16 15 O -0.61 -33.82 16.03 -3.95 -0.06 -33.88 16 16 C 0.37 14.92 5.88 25.72 0.15 15.07 16 17 O -0.45 -18.00 8.60 -4.57 -0.04 -18.04 16 18 C -0.24 -7.19 9.41 22.42 0.21 -6.98 16 19 C 0.03 0.58 9.79 23.91 0.23 0.81 16 20 C -0.10 -2.25 4.35 -20.14 -0.09 -2.34 16 21 C -0.05 -1.24 6.81 22.60 0.15 -1.09 16 22 C -0.17 -4.31 10.01 22.27 0.22 -4.08 16 23 C 0.09 2.21 7.31 22.52 0.16 2.37 16 24 F -0.15 -3.89 17.26 44.97 0.78 -3.12 16 25 C -0.16 -3.36 10.01 22.27 0.22 -3.14 16 26 C -0.07 -1.32 9.80 22.60 0.22 -1.10 16 27 H 0.28 13.65 8.30 -92.71 -0.77 12.88 16 28 H 0.12 5.06 5.34 -2.39 -0.01 5.05 16 29 H 0.11 5.46 6.60 -2.39 -0.02 5.45 16 30 H 0.41 12.78 9.10 -74.06 -0.67 12.10 16 31 H 0.15 4.42 7.70 -2.91 -0.02 4.39 16 32 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.12 3.27 7.34 -2.91 -0.02 3.25 16 34 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -74.29 321.59 5.82 -68.47 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.49 Total: 28.58 kcal Atomic # 6 Polarization: 30.84 SS G_CDS: 4.16 Total: 35.00 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -1.20 Total: -67.17 kcal Atomic # 8 Polarization: -104.80 SS G_CDS: -0.43 Total: -105.24 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -74.29 5.82 -68.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.206 kcal (2) G-P(sol) polarization free energy of solvation -74.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds