Wall clock time and date at job start Fri Apr 10 2020 15:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86791 * 120.00254 * 2 1 4 4 H 1.48497 * 109.47275 * 274.98416 * 3 2 1 5 5 H 1.48503 * 109.47264 * 34.98375 * 3 2 1 6 6 H 1.48506 * 109.47451 * 154.98292 * 3 2 1 7 7 C 1.39908 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99668 * 155.40563 * 7 2 1 9 9 N 1.35794 * 120.00058 * 335.39948 * 7 2 1 10 10 C 1.46500 * 120.00015 * 344.30767 * 9 7 2 11 11 C 1.50707 * 109.46744 * 97.66094 * 10 9 7 12 12 O 1.20821 * 120.00248 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99865 * 179.97438 * 11 10 9 14 14 C 1.34777 * 120.00195 * 164.31337 * 9 7 2 15 15 O 1.21573 * 119.99603 * 5.15915 * 14 9 7 16 16 C 1.48372 * 120.00251 * 185.16190 * 14 9 7 17 17 O 1.21774 * 119.99964 * 5.85741 * 16 14 9 18 18 C 1.41302 * 119.99983 * 185.86093 * 16 14 9 19 19 C 1.35655 * 119.99573 * 179.97438 * 18 16 14 20 20 C 1.46798 * 119.99719 * 180.02562 * 19 18 16 21 21 C 1.40095 * 120.15703 * 359.72316 * 20 19 18 22 22 C 1.37716 * 119.83464 * 179.71737 * 21 20 19 23 23 C 1.38752 * 120.16126 * 0.56106 * 22 21 20 24 24 F 1.35106 * 119.84131 * 179.73696 * 23 22 21 25 25 C 1.38755 * 120.32344 * 359.72101 * 23 22 21 26 26 C 1.37717 * 120.15504 * 359.97438 * 25 23 22 27 27 H 0.96996 * 120.00013 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47256 * 217.65931 * 10 9 7 29 29 H 1.08998 * 109.47306 * 337.66602 * 10 9 7 30 30 H 0.96699 * 116.99816 * 180.02562 * 13 11 10 31 31 H 1.07992 * 120.00015 * 0.27526 * 18 16 14 32 32 H 1.07998 * 120.00915 * 0.02562 * 19 18 16 33 33 H 1.07994 * 120.08583 * 359.97438 * 21 20 19 34 34 H 1.08001 * 119.92343 * 180.27919 * 22 21 20 35 35 H 1.07997 * 119.91954 * 179.97438 * 25 23 22 36 36 H 1.08000 * 120.07272 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3845 2.1071 -1.3947 5 1 1.4964 2.6199 0.8027 6 1 3.5886 1.4120 0.5921 7 6 2.0077 -1.2117 -0.0005 8 1 3.0142 -1.2539 -0.3898 9 7 1.4212 -2.3345 0.4885 10 6 0.2187 -2.2305 1.3189 11 6 -1.0019 -2.4661 0.4669 12 8 -0.8799 -2.6975 -0.7126 13 8 -2.2247 -2.4198 1.0188 14 6 1.9452 -3.5446 0.2101 15 8 2.9941 -3.6271 -0.3991 16 6 1.2421 -4.7760 0.6470 17 8 0.1414 -4.6984 1.1619 18 6 1.8499 -6.0386 0.4656 19 6 1.2072 -7.1643 0.8655 20 6 1.8389 -8.4761 0.6777 21 6 3.1027 -8.5696 0.0805 22 6 3.6916 -9.8032 -0.0872 23 6 3.0314 -10.9525 0.3230 24 9 3.6129 -12.1598 0.1505 25 6 1.7769 -10.8681 0.9099 26 6 1.1784 -9.6408 1.0897 27 1 -0.4850 0.8400 0.0004 28 1 0.2585 -2.9780 2.1112 29 1 0.1670 -1.2354 1.7605 30 1 -2.9772 -2.5776 0.4324 31 1 2.8281 -6.1071 0.0131 32 1 0.2309 -7.0957 1.3221 33 1 3.6157 -7.6764 -0.2438 34 1 4.6678 -9.8766 -0.5433 35 1 1.2686 -11.7669 1.2264 36 1 0.2021 -9.5766 1.5470 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:40 Heat of formation + Delta-G solvation = -135.336833 kcal Electronic energy + Delta-G solvation = -26039.365485 eV Core-core repulsion = 21790.994574 eV Total energy + Delta-G solvation = -4248.370911 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.089 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.11645 -40.11317 -39.25351 -38.61497 -37.33650 -35.37007 -34.64172 -33.79438 -32.04645 -31.46090 -29.59255 -27.85806 -26.36319 -24.68150 -23.35547 -22.45766 -21.14031 -20.20534 -18.52608 -17.94361 -17.33970 -17.05243 -16.72813 -16.42823 -15.80781 -15.79541 -15.68183 -15.29833 -14.85216 -14.56235 -14.28872 -14.23790 -13.95491 -13.82070 -13.42647 -13.11921 -12.87136 -12.58021 -12.23120 -11.99715 -11.92082 -11.84377 -11.66139 -11.10505 -11.05236 -10.68432 -10.52955 -10.38402 -10.23333 -10.11282 -9.73992 -9.39081 -9.18739 -8.27905 -8.23413 -8.17048 -6.82777 -4.07037 0.18283 1.02370 1.47924 2.67968 3.04631 3.08529 3.15977 3.51942 3.59322 3.75190 4.00443 4.03230 4.25536 4.27433 4.46654 4.61776 4.68632 4.85285 4.98784 5.04047 5.28148 5.35841 5.64917 5.72810 5.81160 5.86516 5.96465 6.01366 6.12168 6.39596 6.44657 6.48710 6.54597 6.65423 7.16527 7.47732 7.55559 7.91895 8.14497 8.81239 8.92963 9.12441 9.63639 10.20729 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.023497 B = 0.002898 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.362064 B = 9658.146467 C =10627.313205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.036 3.964 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.370 5.370 10 C 0.135 3.865 11 C 0.512 3.488 12 O -0.514 6.514 13 O -0.530 6.530 14 C 0.384 3.616 15 O -0.578 6.578 16 C 0.364 3.636 17 O -0.471 6.471 18 C -0.188 4.188 19 C -0.040 4.040 20 C -0.075 4.075 21 C -0.073 4.073 22 C -0.153 4.153 23 C 0.099 3.901 24 F -0.141 7.141 25 C -0.157 4.157 26 C -0.071 4.071 27 H 0.281 0.719 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.392 0.608 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 -13.147 5.071 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.173 4.173 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.432 4.432 8 H 0.138 0.862 9 N -0.088 5.088 10 C 0.010 3.990 11 C 0.353 3.647 12 O -0.400 6.400 13 O -0.341 6.341 14 C 0.175 3.825 15 O -0.465 6.465 16 C 0.246 3.754 17 O -0.352 6.352 18 C -0.207 4.207 19 C -0.059 4.059 20 C -0.075 4.075 21 C -0.090 4.090 22 C -0.172 4.172 23 C 0.080 3.920 24 F -0.119 7.119 25 C -0.176 4.176 26 C -0.089 4.089 27 H 0.092 0.908 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.248 0.752 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.045 -13.065 4.966 13.978 hybrid contribution -0.253 0.540 -0.680 0.904 sum -0.207 -12.526 4.287 13.240 Atomic orbital electron populations 1.69686 1.06957 1.29441 1.41213 1.25629 0.95210 1.00865 0.95586 0.85800 0.79951 0.79519 0.78941 1.19841 1.20204 1.18544 1.20004 1.00209 0.84141 1.38845 0.86236 1.43333 1.20584 1.05742 1.39118 1.20983 0.81339 1.04874 0.91847 1.23198 0.83527 0.70385 0.87546 1.90588 1.86361 1.45422 1.17599 1.84489 1.17200 1.85306 1.47110 1.19743 0.89955 0.84219 0.88578 1.90594 1.24169 1.85570 1.46153 1.21093 0.86538 0.91342 0.76433 1.90551 1.20172 1.89984 1.34444 1.22518 1.02613 0.92964 1.02605 1.22546 0.98742 0.90135 0.94525 1.19193 0.94828 0.93305 1.00205 1.21500 0.94103 0.97682 0.95765 1.21112 1.01547 0.91327 1.03181 1.17967 0.92834 0.80418 1.00798 1.91498 1.84162 1.42917 1.93372 1.21053 0.94606 0.99348 1.02549 1.21271 0.99669 0.90617 0.97376 0.90765 0.88236 0.86196 0.75178 0.84206 0.84564 0.83801 0.84361 0.84537 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.86 9.59 55.54 0.53 -20.33 16 2 C 0.04 0.89 4.80 -17.36 -0.08 0.81 16 3 Si 0.93 18.82 29.62 -169.99 -5.04 13.78 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.30 -8.04 9.35 -15.17 -0.14 -8.19 16 8 H 0.12 3.26 7.34 -52.49 -0.39 2.87 16 9 N -0.37 -9.47 2.17 -117.01 -0.25 -9.72 16 10 C 0.14 3.10 4.79 -5.19 -0.02 3.07 16 11 C 0.51 12.02 4.76 36.01 0.17 12.19 16 12 O -0.51 -13.88 16.82 -20.40 -0.34 -14.22 16 13 O -0.53 -10.24 13.42 -39.26 -0.53 -10.76 16 14 C 0.38 9.63 7.33 -12.09 -0.09 9.55 16 15 O -0.58 -15.63 16.00 5.30 0.08 -15.54 16 16 C 0.36 7.67 6.73 -34.25 -0.23 7.44 16 17 O -0.47 -9.98 11.74 4.63 0.05 -9.92 16 18 C -0.19 -3.19 8.90 -39.34 -0.35 -3.54 16 19 C -0.04 -0.56 9.43 -37.05 -0.35 -0.91 16 20 C -0.08 -0.89 5.87 -105.05 -0.62 -1.50 16 21 C -0.07 -0.82 9.41 -39.08 -0.37 -1.19 16 22 C -0.15 -1.58 10.01 -39.58 -0.40 -1.97 16 23 C 0.10 1.04 7.31 -39.20 -0.29 0.76 16 24 F -0.14 -1.54 17.26 2.25 0.04 -1.51 16 25 C -0.16 -1.47 10.01 -39.58 -0.40 -1.87 16 26 C -0.07 -0.70 9.80 -39.08 -0.38 -1.08 16 27 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 28 H 0.10 2.06 6.11 -51.93 -0.32 1.75 16 29 H 0.12 2.72 6.26 -51.93 -0.33 2.39 16 30 H 0.39 5.85 9.10 45.56 0.41 6.26 16 31 H 0.14 2.27 5.71 -52.49 -0.30 1.97 16 32 H 0.14 1.80 7.45 -52.49 -0.39 1.41 16 33 H 0.14 1.57 6.17 -52.49 -0.32 1.24 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 327.06 15.07 4.93 4.93 Total: -1.00 -32.60 327.06 -6.09 -38.69 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -2.03 Total: 11.03 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: -3.54 Total: 13.58 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 0.28 Total: -30.05 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -0.73 Total: -50.45 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.04 Total: 13.78 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.60 -6.09 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.642 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds