Wall clock time and date at job start Fri Apr 10 2020 15:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00327 * 2 1 4 4 H 1.48503 * 109.47344 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47057 * 300.00607 * 3 2 1 6 6 H 1.48508 * 109.46675 * 60.00286 * 3 2 1 7 7 C 1.37877 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00124 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47600 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47595 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99583 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.39880 * 120.00107 * 185.51720 * 13 11 10 15 15 C 1.38944 * 119.95831 * 24.87118 * 14 13 11 16 16 C 1.37875 * 120.06427 * 179.97438 * 15 14 13 17 17 C 1.39374 * 119.97243 * 0.02562 * 16 15 14 18 18 C 1.48423 * 120.04147 * 179.97438 * 17 16 15 19 19 N 1.34063 * 126.67701 * 359.68781 * 18 17 16 20 20 N 1.28987 * 107.26597 * 179.89711 * 19 18 17 21 21 N 1.28734 * 108.94671 * 0.37064 * 20 19 18 22 22 H 0.96999 * 125.33447 * 179.80055 * 21 20 19 23 23 N 1.28873 * 109.32282 * 359.76088 * 21 20 19 24 24 C 1.39341 * 119.91731 * 0.02562 * 17 16 15 25 25 C 1.37997 * 119.93494 * 359.95958 * 24 17 16 26 26 Cl 1.73601 * 119.98294 * 179.97438 * 25 24 17 27 27 H 0.97003 * 119.99995 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47015 * 59.99736 * 9 7 2 29 29 H 1.09011 * 109.46720 * 300.00552 * 9 7 2 30 30 H 1.09002 * 109.47356 * 59.99101 * 10 9 7 31 31 H 1.08997 * 109.46833 * 299.99866 * 10 9 7 32 32 H 0.97002 * 119.99480 * 5.53078 * 13 11 10 33 33 H 1.08009 * 119.96728 * 359.97438 * 15 14 13 34 34 H 1.08001 * 120.01379 * 179.74889 * 16 15 14 35 35 H 1.07992 * 120.03348 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4916 -4.9672 0.0001 12 8 0.2787 -4.9671 0.0010 13 7 2.1654 -6.1344 -0.0003 14 6 1.4707 -7.3430 -0.1162 15 6 0.2243 -7.3708 -0.7295 16 6 -0.4621 -8.5609 -0.8454 17 6 0.0946 -9.7372 -0.3464 18 6 -0.6433 -11.0191 -0.4698 19 7 -1.8491 -11.1985 -1.0276 20 7 -2.1308 -12.4538 -0.9348 21 7 -1.1614 -13.0570 -0.3401 22 1 -1.1275 -14.0063 -0.1438 23 7 -0.2428 -12.2019 -0.0471 24 6 1.3442 -9.7080 0.2695 25 6 2.0281 -8.5149 0.3832 26 17 3.5848 -8.4770 1.1508 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6245 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8894 31 1 2.8717 -3.6044 -0.8905 32 1 3.1321 -6.1364 0.0800 33 1 -0.2073 -6.4592 -1.1159 34 1 -1.4327 -8.5809 -1.3186 35 1 1.7770 -10.6183 0.6572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609494713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:21 Heat of formation + Delta-G solvation = 100.894284 kcal Electronic energy + Delta-G solvation = -22765.800184 eV Core-core repulsion = 19020.594900 eV Total energy + Delta-G solvation = -3745.205284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.71777 -40.59422 -38.67893 -36.74645 -35.19856 -34.46881 -33.60577 -33.31683 -31.28768 -30.99732 -29.57547 -26.08706 -25.05460 -24.42521 -23.03581 -22.33818 -21.29575 -19.88907 -19.47910 -17.99039 -17.40803 -17.12624 -16.81886 -15.96149 -15.49486 -15.08929 -14.76533 -14.47532 -14.17418 -13.95456 -13.86746 -13.48957 -13.03598 -12.55652 -12.46819 -12.24509 -12.13355 -11.84423 -11.61402 -11.37796 -11.27768 -11.26418 -11.14402 -10.98243 -10.63081 -10.24244 -10.06734 -9.77399 -9.36751 -9.14608 -9.01567 -8.38392 -8.11607 -6.01639 -4.06370 0.40557 0.89651 1.00605 1.82143 1.96883 2.02087 2.89335 3.05800 3.30005 3.37648 3.40482 3.43312 3.55599 3.94254 4.43116 4.55875 4.83219 4.96392 4.97401 5.15574 5.22439 5.33925 5.36821 5.63456 5.84909 5.94465 6.04868 6.05735 6.10022 6.14832 6.30949 6.70934 6.73062 7.43389 7.67275 7.75341 7.86916 7.98758 8.25320 8.40592 9.01360 9.57852 11.09246 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.002442 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.648956 B =11461.454880 C =12582.970239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.503 6.503 13 N -0.679 5.679 14 C 0.201 3.799 15 C -0.128 4.128 16 C -0.043 4.043 17 C -0.045 4.045 18 C 0.231 3.769 19 N -0.267 5.267 20 N -0.049 5.049 21 N -0.229 5.229 22 H 0.475 0.525 23 N -0.298 5.298 24 C -0.046 4.046 25 C -0.085 4.085 26 Cl -0.061 7.061 27 H 0.261 0.739 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.413 0.587 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 -26.590 -0.294 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.169 4.169 11 C 0.302 3.698 12 O -0.376 6.376 13 N -0.323 5.323 14 C 0.101 3.899 15 C -0.148 4.148 16 C -0.064 4.064 17 C -0.050 4.050 18 C -0.049 4.049 19 N -0.140 5.140 20 N -0.045 5.045 21 N -0.075 5.075 22 H 0.329 0.671 23 N -0.150 5.150 24 C -0.067 4.067 25 C -0.114 4.114 26 Cl -0.032 7.032 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.251 0.749 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.477 -26.716 -0.410 26.833 hybrid contribution 1.507 0.424 0.471 1.635 sum 3.984 -26.292 0.061 26.592 Atomic orbital electron populations 1.69996 1.06054 1.26610 1.50017 1.25020 0.94839 0.99296 0.95194 0.86526 0.79998 0.83752 0.77628 1.19730 1.20984 1.20993 1.21215 0.93004 0.90842 1.51624 0.92447 1.18941 0.93106 0.89255 0.98850 1.21958 1.00963 0.90797 1.03200 1.21974 0.88861 0.85282 0.73686 1.90654 1.14241 1.87003 1.45676 1.44165 1.11380 1.04173 1.72624 1.17855 0.93135 0.84939 0.93948 1.21490 0.93715 0.99953 0.99688 1.21209 0.99797 0.89945 0.95408 1.16955 0.94139 0.87736 1.06165 1.23543 0.91191 0.92613 0.97526 1.76120 1.12851 1.05959 1.19061 1.78924 1.13232 1.01041 1.11267 1.47711 1.09644 1.13263 1.36880 0.67101 1.74933 1.17037 0.99842 1.23147 1.20710 0.92630 0.96748 0.96624 1.20391 0.90883 0.94266 1.05907 1.98366 1.26193 1.98625 1.79992 0.92916 0.95582 0.95615 0.89585 0.89434 0.74940 0.81571 0.83692 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.91 4.26 -27.88 -0.12 0.79 16 10 C -0.13 -2.40 5.64 -27.89 -0.16 -2.56 16 11 C 0.51 8.92 7.63 -10.99 -0.08 8.83 16 12 O -0.50 -10.47 13.14 5.55 0.07 -10.40 16 13 N -0.68 -9.20 5.18 -9.82 -0.05 -9.25 16 14 C 0.20 2.66 6.43 -83.62 -0.54 2.13 16 15 C -0.13 -1.75 8.70 -39.45 -0.34 -2.10 16 16 C -0.04 -0.51 9.69 -39.29 -0.38 -0.89 16 17 C -0.05 -0.51 5.88 -104.87 -0.62 -1.13 16 18 C 0.23 2.58 7.93 -156.29 -1.24 1.34 16 19 N -0.27 -3.16 12.23 32.15 0.39 -2.77 16 20 N -0.05 -0.48 13.47 60.35 0.81 0.33 16 21 N -0.23 -1.55 7.90 60.35 0.48 -1.07 16 22 H 0.47 0.82 8.96 -340.36 -3.05 -2.23 16 23 N -0.30 -2.77 12.08 32.17 0.39 -2.38 16 24 C -0.05 -0.49 9.47 -39.26 -0.37 -0.86 16 25 C -0.08 -0.97 6.33 -39.37 -0.25 -1.22 16 26 Cl -0.06 -0.62 27.76 -51.86 -1.44 -2.06 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.03 0.71 8.10 -51.92 -0.42 0.29 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.41 4.54 7.75 -40.82 -0.32 4.22 16 33 H 0.17 2.59 5.78 -52.48 -0.30 2.29 16 34 H 0.15 1.58 7.88 -52.49 -0.41 1.17 16 35 H 0.14 1.30 7.88 -52.49 -0.41 0.89 16 LS Contribution 329.22 15.07 4.96 4.96 Total: -1.00 -33.69 329.22 -8.90 -42.59 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.72 Total: -1.35 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -4.51 Total: -8.84 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 2.76 Total: -41.08 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.44 Total: -2.06 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.69 -8.90 -42.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.489 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds