Wall clock time and date at job start Fri Apr 10 2020 15:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00327 * 2 1 4 4 H 1.48503 * 109.47344 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47057 * 300.00607 * 3 2 1 6 6 H 1.48508 * 109.46675 * 60.00286 * 3 2 1 7 7 C 1.37877 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00124 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47600 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47595 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99583 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.39880 * 120.00107 * 185.51720 * 13 11 10 15 15 C 1.38944 * 119.95831 * 24.87118 * 14 13 11 16 16 C 1.37875 * 120.06427 * 179.97438 * 15 14 13 17 17 C 1.39374 * 119.97243 * 0.02562 * 16 15 14 18 18 C 1.48423 * 120.04147 * 179.97438 * 17 16 15 19 19 N 1.34063 * 126.67701 * 359.68781 * 18 17 16 20 20 N 1.28987 * 107.26597 * 179.89711 * 19 18 17 21 21 N 1.28734 * 108.94671 * 0.37064 * 20 19 18 22 22 H 0.96999 * 125.33447 * 179.80055 * 21 20 19 23 23 N 1.28873 * 109.32282 * 359.76088 * 21 20 19 24 24 C 1.39341 * 119.91731 * 0.02562 * 17 16 15 25 25 C 1.37997 * 119.93494 * 359.95958 * 24 17 16 26 26 Cl 1.73601 * 119.98294 * 179.97438 * 25 24 17 27 27 H 0.97003 * 119.99995 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47015 * 59.99736 * 9 7 2 29 29 H 1.09011 * 109.46720 * 300.00552 * 9 7 2 30 30 H 1.09002 * 109.47356 * 59.99101 * 10 9 7 31 31 H 1.08997 * 109.46833 * 299.99866 * 10 9 7 32 32 H 0.97002 * 119.99480 * 5.53078 * 13 11 10 33 33 H 1.08009 * 119.96728 * 359.97438 * 15 14 13 34 34 H 1.08001 * 120.01379 * 179.74889 * 16 15 14 35 35 H 1.07992 * 120.03348 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4916 -4.9672 0.0001 12 8 0.2787 -4.9671 0.0010 13 7 2.1654 -6.1344 -0.0003 14 6 1.4707 -7.3430 -0.1162 15 6 0.2243 -7.3708 -0.7295 16 6 -0.4621 -8.5609 -0.8454 17 6 0.0946 -9.7372 -0.3464 18 6 -0.6433 -11.0191 -0.4698 19 7 -1.8491 -11.1985 -1.0276 20 7 -2.1308 -12.4538 -0.9348 21 7 -1.1614 -13.0570 -0.3401 22 1 -1.1275 -14.0063 -0.1438 23 7 -0.2428 -12.2019 -0.0471 24 6 1.3442 -9.7080 0.2695 25 6 2.0281 -8.5149 0.3832 26 17 3.5848 -8.4770 1.1508 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6245 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8894 31 1 2.8717 -3.6044 -0.8905 32 1 3.1321 -6.1364 0.0800 33 1 -0.2073 -6.4592 -1.1159 34 1 -1.4327 -8.5809 -1.3186 35 1 1.7770 -10.6183 0.6572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609494713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:21 Heat of formation + Delta-G solvation = 77.732850 kcal Electronic energy + Delta-G solvation = -22766.804539 eV Core-core repulsion = 19020.594900 eV Total energy + Delta-G solvation = -3746.209639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.47551 -41.77819 -39.84037 -37.62469 -36.33939 -35.56313 -35.28375 -34.24066 -33.05258 -31.97824 -30.69888 -27.83635 -25.92505 -25.50536 -24.06086 -23.69920 -22.55181 -21.24276 -20.23887 -19.12112 -18.75760 -18.15312 -17.88852 -17.53822 -16.79410 -16.46275 -16.17143 -15.75039 -15.25278 -15.00252 -14.86558 -14.82562 -14.26185 -14.12301 -13.89105 -13.33967 -13.19976 -12.96946 -12.85240 -12.77058 -12.44523 -12.40590 -12.25282 -12.15338 -12.06924 -11.91312 -11.63447 -11.28034 -11.23525 -10.76747 -10.55103 -9.97949 -9.14768 -8.16427 -6.29399 -0.51388 0.05639 0.13817 0.92393 1.07242 1.42002 1.44628 1.45074 1.58229 1.61562 1.89325 2.44812 2.57299 2.61459 3.13035 3.17527 3.61379 3.76213 3.96027 4.08032 4.17027 4.28475 4.39068 4.49096 4.54338 4.68165 4.89697 4.98524 5.06294 5.17095 5.27342 5.53034 5.61698 5.63978 5.65450 5.87467 6.19153 6.27966 6.88395 7.05768 7.10001 7.40737 8.96165 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.002442 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.648956 B =11461.454880 C =12582.970239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.970 3.030 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.517 3.483 12 O -0.547 6.547 13 N -0.660 5.660 14 C 0.181 3.819 15 C -0.141 4.141 16 C -0.043 4.043 17 C -0.039 4.039 18 C 0.216 3.784 19 N -0.295 5.295 20 N -0.055 5.055 21 N -0.198 5.198 22 H 0.495 0.505 23 N -0.290 5.290 24 C -0.037 4.037 25 C -0.077 4.077 26 Cl -0.043 7.043 27 H 0.262 0.738 28 H -0.011 1.011 29 H -0.014 1.014 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.427 0.573 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.355 -28.377 0.170 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.795 3.205 4 H -0.176 1.176 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.095 0.905 9 C 0.003 3.997 10 C -0.158 4.158 11 C 0.308 3.692 12 O -0.423 6.423 13 N -0.306 5.306 14 C 0.082 3.918 15 C -0.161 4.161 16 C -0.064 4.064 17 C -0.043 4.043 18 C -0.063 4.063 19 N -0.167 5.167 20 N -0.050 5.050 21 N -0.049 5.049 22 H 0.355 0.645 23 N -0.143 5.143 24 C -0.058 4.058 25 C -0.106 4.106 26 Cl -0.014 7.014 27 H 0.071 0.929 28 H 0.007 0.993 29 H 0.005 0.995 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.267 0.733 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.014 -28.571 0.053 29.008 hybrid contribution 0.707 0.752 0.345 1.088 sum 5.720 -27.820 0.397 28.404 Atomic orbital electron populations 1.70167 1.08189 1.27678 1.51592 1.26083 0.95692 1.03791 0.94808 0.85323 0.79385 0.78410 0.77427 1.17624 1.20792 1.20840 1.21735 0.94063 0.91546 1.50486 0.90518 1.18719 0.93689 0.92090 0.95206 1.21707 0.99520 0.88951 1.05627 1.21635 0.88115 0.86078 0.73399 1.90659 1.16003 1.87634 1.47987 1.43728 1.11871 1.03303 1.71704 1.17893 0.93340 0.85175 0.95354 1.21303 0.94441 0.99671 1.00696 1.21205 0.99915 0.89763 0.95518 1.17018 0.94318 0.87680 1.05300 1.23476 0.91358 0.92990 0.98525 1.76112 1.13484 1.06987 1.20087 1.78879 1.13758 1.00605 1.11778 1.47788 1.08278 1.14059 1.34748 0.64520 1.74889 1.17267 0.99475 1.22636 1.20907 0.92056 0.97136 0.95725 1.20371 0.91456 0.93659 1.05136 1.98375 1.24909 1.98585 1.79573 0.92914 0.99300 0.99540 0.87121 0.86881 0.73270 0.84046 0.83303 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 2 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 3 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 4 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -29.64 9.11 25.60 0.23 -29.41 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.04 2.14 4.26 29.85 0.13 2.27 16 10 C -0.12 -4.36 5.64 29.84 0.17 -4.20 16 11 C 0.52 18.34 7.63 87.66 0.67 19.01 16 12 O -0.55 -24.10 13.14 -3.07 -0.04 -24.14 16 13 N -0.66 -17.46 5.18 -303.35 -1.57 -19.03 16 14 C 0.18 4.73 6.43 38.22 0.25 4.97 16 15 C -0.14 -3.99 8.70 22.35 0.19 -3.79 16 16 C -0.04 -1.05 9.69 22.46 0.22 -0.83 16 17 C -0.04 -0.83 5.88 -20.02 -0.12 -0.95 16 18 C 0.22 4.51 7.93 137.36 1.09 5.60 16 19 N -0.29 -6.70 12.23 -52.19 -0.64 -7.33 16 20 N -0.06 -0.98 13.47 37.02 0.50 -0.48 16 21 N -0.20 -2.19 7.90 37.02 0.29 -1.90 16 22 H 0.50 0.27 8.96 -347.53 -3.12 -2.84 16 23 N -0.29 -4.68 12.08 -52.14 -0.63 -5.31 16 24 C -0.04 -0.71 9.47 22.48 0.21 -0.50 16 25 C -0.08 -1.63 6.33 22.41 0.14 -1.49 16 26 Cl -0.04 -0.77 27.76 -2.72 -0.08 -0.85 16 27 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 28 H -0.01 -0.68 8.10 -2.39 -0.02 -0.70 16 29 H -0.01 -0.83 8.10 -2.38 -0.02 -0.85 16 30 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 32 H 0.43 8.59 7.75 -92.71 -0.72 7.87 16 33 H 0.14 4.78 5.78 -2.91 -0.02 4.77 16 34 H 0.15 3.39 7.88 -2.91 -0.02 3.37 16 35 H 0.17 2.46 7.88 -2.91 -0.02 2.44 16 Total: -1.00 -75.58 329.22 1.14 -74.44 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -2.65 Total: 6.16 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 3.64 Total: -9.20 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -1.76 Total: -91.93 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.04 Total: -24.14 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -75.58 1.14 -74.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.170 kcal (2) G-P(sol) polarization free energy of solvation -75.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds