Wall clock time and date at job start Fri Apr 10 2020 16:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99882 * 2 1 4 4 O 1.20815 * 120.00159 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99394 * 179.97438 * 3 2 1 6 6 N 1.46507 * 109.46688 * 179.97438 * 5 3 2 7 7 C 1.37094 * 120.00001 * 269.99905 * 6 5 3 8 8 H 1.07998 * 119.99846 * 194.22909 * 7 6 5 9 9 C 1.38945 * 120.00180 * 14.23098 * 7 6 5 10 10 N 1.31414 * 119.99722 * 23.19217 * 9 7 6 11 11 Si 1.86794 * 120.00137 * 203.18689 * 9 7 6 12 12 H 1.48503 * 109.47058 * 60.00301 * 11 9 7 13 13 H 1.48504 * 109.47320 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47541 * 300.00241 * 11 9 7 15 15 C 1.34773 * 119.99660 * 90.00098 * 6 5 3 16 16 O 1.21296 * 120.00119 * 4.91291 * 15 6 5 17 17 C 1.50700 * 120.00034 * 184.91234 * 15 6 5 18 18 H 1.08999 * 115.55781 * 57.57196 * 17 15 6 19 19 C 1.52999 * 117.49800 * 271.88803 * 17 15 6 20 20 C 1.52998 * 117.50070 * 203.26533 * 17 15 6 21 21 H 1.09002 * 117.51482 * 214.97077 * 20 17 15 22 22 C 1.50700 * 117.49980 * 359.97438 * 20 17 15 23 23 C 1.38247 * 119.97759 * 240.01988 * 22 20 17 24 24 C 1.38196 * 120.02299 * 179.97438 * 23 22 20 25 25 C 1.38460 * 119.97897 * 359.97438 * 24 23 22 26 26 F 1.35103 * 120.02880 * 180.02562 * 25 24 23 27 27 C 1.38466 * 119.94499 * 359.97438 * 25 24 23 28 28 C 1.38188 * 119.97615 * 0.02562 * 27 25 24 29 29 H 1.09006 * 109.46859 * 300.00241 * 1 2 3 30 30 H 1.09000 * 109.47034 * 59.99753 * 1 2 3 31 31 H 1.08996 * 109.47481 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47298 * 59.99896 * 5 3 2 33 33 H 1.08995 * 109.47209 * 299.99757 * 5 3 2 34 34 H 0.97002 * 119.99869 * 184.41114 * 10 9 7 35 35 H 1.08999 * 117.49962 * 145.02523 * 19 17 15 36 36 H 1.09004 * 117.50141 * 359.97438 * 19 17 15 37 37 H 1.07994 * 119.98578 * 0.27161 * 23 22 20 38 38 H 1.08004 * 120.01264 * 180.02562 * 24 23 22 39 39 H 1.07999 * 120.00701 * 179.97438 * 27 25 24 40 40 H 1.08001 * 119.99155 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1767 3.3363 -1.1878 8 1 4.6963 4.2829 -1.2025 9 6 3.7056 2.7839 -2.3725 10 7 2.7168 1.9187 -2.3464 11 14 4.4777 3.2711 -4.0021 12 1 5.9205 2.9193 -3.9910 13 1 3.8005 2.5461 -5.1072 14 1 4.3266 4.7345 -4.2037 15 6 4.1724 3.3266 1.1667 16 8 4.0872 2.7234 2.2156 17 6 4.4913 4.7995 1.1684 18 1 3.7587 5.4398 0.6772 19 6 5.9635 5.2036 1.0672 20 6 5.2155 5.3641 2.3921 21 1 4.9596 6.3760 2.7062 22 6 5.5548 4.4050 3.5039 23 6 5.0457 4.6103 4.7728 24 6 5.3558 3.7311 5.7928 25 6 6.1762 2.6439 5.5436 26 9 6.4795 1.7834 6.5400 27 6 6.6845 2.4386 4.2721 28 6 6.3731 3.3191 3.2536 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.9565 0.7804 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 2.4303 1.4849 -3.1654 35 1 6.1994 6.1099 0.5095 36 1 6.7014 4.4041 0.9998 37 1 4.4017 5.4555 4.9657 38 1 4.9577 3.8915 6.7839 39 1 7.3248 1.5912 4.0767 40 1 6.7698 3.1595 2.2619 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120519315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 16:03:49 Heat of formation + Delta-G solvation = -105.806799 kcal Electronic energy + Delta-G solvation = -27673.474316 eV Core-core repulsion = 23562.217018 eV Total energy + Delta-G solvation = -4111.257298 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 7.11 seconds Orbital eigenvalues (eV) -49.80537 -41.48692 -40.79197 -39.47763 -37.50722 -36.79669 -36.34389 -33.43044 -31.97011 -31.12984 -30.24096 -27.94344 -26.78717 -24.76896 -24.44691 -23.65869 -22.03726 -21.40440 -20.77902 -19.02420 -18.46566 -18.36143 -18.10389 -17.24673 -17.16420 -16.88660 -16.52016 -16.45214 -16.14509 -15.92659 -15.68068 -15.19449 -14.76681 -14.37475 -14.31094 -14.11821 -14.09365 -13.86031 -13.45724 -13.33614 -13.00502 -12.89151 -12.81546 -12.52624 -12.39143 -12.27779 -12.14318 -11.82500 -11.53532 -11.45129 -11.36431 -11.21166 -10.87662 -10.34011 -9.94381 -9.77052 -9.09389 -8.34180 -5.85412 0.30178 0.46631 1.44492 1.51977 1.60714 1.71813 1.86043 2.26351 2.38740 2.59699 2.89518 3.11507 3.28076 3.42133 3.73831 3.88581 4.02696 4.07013 4.11507 4.23329 4.30027 4.35239 4.41858 4.44108 4.50417 4.62427 4.65239 4.70702 4.77807 4.94053 5.02344 5.10529 5.19123 5.24859 5.30136 5.43926 5.50302 5.67820 5.75061 5.77589 6.09754 6.39154 7.13092 7.30295 7.56986 7.97034 8.72849 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.004696 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.231349 B = 5960.935777 C = 7259.506042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.381 6.381 3 C 0.489 3.511 4 O -0.536 6.536 5 C 0.158 3.842 6 N -0.440 5.440 7 C -0.338 4.338 8 H 0.119 0.881 9 C -0.007 4.007 10 N -0.897 5.897 11 Si 0.989 3.011 12 H -0.263 1.263 13 H -0.293 1.293 14 H -0.268 1.268 15 C 0.486 3.514 16 O -0.605 6.605 17 C -0.163 4.163 18 H 0.119 0.881 19 C -0.133 4.133 20 C -0.092 4.092 21 H 0.146 0.854 22 C -0.040 4.040 23 C -0.092 4.092 24 C -0.157 4.157 25 C 0.065 3.935 26 F -0.152 7.152 27 C -0.161 4.161 28 C -0.068 4.068 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.136 0.864 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 3.373 6.021 8.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.298 6.298 3 C 0.331 3.669 4 O -0.423 6.423 5 C 0.032 3.968 6 N -0.158 5.158 7 C -0.465 4.465 8 H 0.136 0.864 9 C -0.208 4.208 10 N -0.536 5.536 11 Si 0.814 3.186 12 H -0.187 1.187 13 H -0.219 1.219 14 H -0.193 1.193 15 C 0.276 3.724 16 O -0.492 6.492 17 C -0.184 4.184 18 H 0.137 0.863 19 C -0.170 4.170 20 C -0.110 4.110 21 H 0.164 0.836 22 C -0.041 4.041 23 C -0.110 4.110 24 C -0.176 4.176 25 C 0.046 3.954 26 F -0.131 7.131 27 C -0.180 4.180 28 C -0.086 4.086 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.150 0.850 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.151 0.849 36 H 0.113 0.887 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.984 3.259 6.410 8.749 hybrid contribution -0.563 -0.401 -1.052 1.259 sum 4.421 2.859 5.357 7.511 Atomic orbital electron populations 1.23239 0.76404 1.04634 1.01036 1.86417 1.23961 1.34162 1.85255 1.23981 0.92559 0.80715 0.69612 1.90461 1.67253 1.37577 1.47036 1.20383 0.87116 0.86173 1.03172 1.43601 1.57875 1.08170 1.06168 1.20014 1.35374 1.08250 0.82869 0.86377 1.26021 0.94239 0.97710 1.02849 1.69907 1.23043 1.30724 1.29951 0.85037 0.78602 0.78436 0.76556 1.18737 1.21888 1.19275 1.19934 0.81032 0.88781 0.82627 1.90583 1.57879 1.68965 1.31731 1.21977 0.98878 0.93286 1.04222 0.86280 1.23203 0.91628 1.04053 0.98108 1.21295 1.03294 0.99217 0.87211 0.83613 1.19193 0.95690 0.95141 0.94027 1.20970 0.98766 0.99895 0.91402 1.21224 0.99970 0.94709 1.01660 1.17836 1.01216 0.90960 0.85404 1.91429 1.92126 1.69215 1.60365 1.21119 1.03354 1.01603 0.91917 1.20773 0.96587 0.93303 0.97950 0.93273 0.93737 0.85008 0.87176 0.89349 0.92204 0.84935 0.88691 0.83180 0.83184 0.84606 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 10.56 113.37 1.20 2.60 16 2 O -0.38 -16.64 10.57 -51.43 -0.54 -17.18 16 3 C 0.49 24.56 5.89 71.24 0.42 24.98 16 4 O -0.54 -30.28 15.54 22.00 0.34 -29.94 16 5 C 0.16 7.55 5.29 85.63 0.45 8.01 16 6 N -0.44 -21.20 2.11 -639.59 -1.35 -22.55 16 7 C -0.34 -16.09 9.18 84.04 0.77 -15.32 16 8 H 0.12 5.16 6.62 -2.91 -0.02 5.14 16 9 C -0.01 -0.34 4.87 84.92 0.41 0.07 16 10 N -0.90 -46.20 8.72 21.66 0.19 -46.01 16 11 Si 0.99 38.00 29.61 68.60 2.03 40.03 16 12 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 13 H -0.29 -11.53 7.11 99.48 0.71 -10.83 16 14 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 15 C 0.49 22.02 6.70 87.66 0.59 22.61 16 16 O -0.61 -29.51 12.82 -3.08 -0.04 -29.55 16 17 C -0.16 -5.84 4.46 -11.54 -0.05 -5.89 16 18 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 19 C -0.13 -3.61 9.30 30.59 0.28 -3.33 16 20 C -0.09 -2.60 6.04 -11.54 -0.07 -2.67 16 21 H 0.15 3.15 8.14 -2.39 -0.02 3.13 16 22 C -0.04 -1.26 4.09 -19.86 -0.08 -1.34 16 23 C -0.09 -2.62 9.73 22.26 0.22 -2.41 16 24 C -0.16 -4.46 10.03 22.31 0.22 -4.24 16 25 C 0.06 2.05 7.30 22.38 0.16 2.21 16 26 F -0.15 -4.78 17.27 44.97 0.78 -4.00 16 27 C -0.16 -5.18 10.03 22.31 0.22 -4.96 16 28 C -0.07 -2.25 6.91 22.26 0.15 -2.10 16 29 H 0.05 1.69 8.13 -2.38 -0.02 1.67 16 30 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 31 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.11 5.26 6.67 -2.38 -0.02 5.24 16 33 H 0.09 4.06 7.36 -2.39 -0.02 4.04 16 34 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 35 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.09 2.68 6.18 -2.39 -0.01 2.67 16 37 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.12 3.93 5.93 -2.91 -0.02 3.91 16 Total: -1.00 -66.41 342.43 7.39 -59.03 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 1.08 Total: 31.95 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 4.91 Total: 18.23 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.16 Total: -68.55 kcal Atomic # 8 Polarization: -76.43 SS G_CDS: -0.24 Total: -76.67 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.78 Total: -4.00 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -66.41 7.39 -59.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120519315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.781 kcal (2) G-P(sol) polarization free energy of solvation -66.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.11 seconds