Wall clock time and date at job start Fri Apr 10 2020 15:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99920 * 2 1 4 4 H 1.48496 * 109.46985 * 269.99949 * 3 2 1 5 5 H 1.48501 * 109.47002 * 29.99917 * 3 2 1 6 6 H 1.48499 * 109.47270 * 149.99592 * 3 2 1 7 7 C 1.37868 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00552 * 173.68997 * 7 2 1 9 9 C 1.50705 * 120.00038 * 353.69126 * 7 2 1 10 10 C 1.53000 * 115.55306 * 85.64997 * 9 7 2 11 11 S 1.81402 * 109.46993 * 65.32956 * 10 9 7 12 12 C 1.81403 * 102.99664 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46825 * 180.02562 * 12 11 10 14 14 N 1.29023 * 124.92022 * 89.99610 * 13 12 11 15 15 C 1.31776 * 117.12640 * 179.97438 * 14 13 12 16 16 C 1.50706 * 122.74899 * 179.97438 * 15 14 13 17 17 F 1.39904 * 109.47149 * 5.03018 * 16 15 14 18 18 F 1.39901 * 109.47138 * 125.02661 * 16 15 14 19 19 F 1.39894 * 109.47331 * 245.02913 * 16 15 14 20 20 C 1.33632 * 114.50368 * 0.24162 * 15 14 13 21 21 S 1.70974 * 124.91435 * 269.99861 * 13 12 11 22 22 C 1.53000 * 117.49827 * 231.32095 * 9 7 2 23 23 C 1.53005 * 117.49606 * 299.97762 * 9 7 2 24 24 H 0.96999 * 120.00116 * 355.01853 * 1 2 3 25 25 H 1.09000 * 109.46587 * 305.33624 * 10 9 7 26 26 H 1.08994 * 109.47260 * 185.33333 * 10 9 7 27 27 H 1.08996 * 109.47149 * 60.00108 * 12 11 10 28 28 H 1.09001 * 109.46851 * 299.99679 * 12 11 10 29 29 H 1.07995 * 126.04234 * 179.76587 * 20 15 14 30 30 H 1.08996 * 117.50023 * 214.99855 * 22 9 7 31 31 H 1.09003 * 117.49886 * 0.02562 * 22 9 7 32 32 H 1.09005 * 117.49700 * 359.97438 * 23 9 7 33 33 H 1.09004 * 117.49428 * 144.97424 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0797 -1.1969 -0.1023 9 6 1.2579 -2.4951 0.1445 10 6 0.7096 -3.0886 -1.1547 11 16 2.0894 -3.5561 -2.2355 12 6 1.2525 -4.2268 -3.6986 13 6 2.2813 -4.6676 -4.7077 14 7 2.7986 -5.8481 -4.7677 15 6 3.6873 -6.0672 -5.7157 16 6 4.3706 -7.3976 -5.9008 17 9 3.8271 -8.3291 -5.0095 18 9 4.1789 -7.8417 -7.2136 19 9 5.7399 -7.2574 -5.6513 20 6 3.9371 -5.0115 -6.4959 21 16 2.9320 -3.6758 -5.9390 22 6 1.7411 -3.4717 1.2186 23 6 0.4343 -2.6998 1.4176 24 1 -0.4850 0.8369 0.0729 25 1 0.0882 -2.3482 -1.6585 26 1 0.1113 -3.9708 -0.9271 27 1 0.6177 -3.4577 -4.1385 28 1 0.6405 -5.0805 -3.4076 29 1 4.6312 -4.9825 -7.3227 30 1 1.6683 -4.5370 0.9998 31 1 2.5987 -3.1729 1.8214 32 1 0.4328 -1.8935 2.1512 33 1 -0.4984 -3.2570 1.3294 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596348024.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:59:29 Heat of formation + Delta-G solvation = -81.522014 kcal Electronic energy + Delta-G solvation = -21710.736901 eV Core-core repulsion = 17768.664310 eV Total energy + Delta-G solvation = -3942.072592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 323.032 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.32399 -47.87529 -47.75454 -40.15804 -36.62183 -32.94103 -31.98385 -29.01536 -27.68444 -27.14986 -25.36952 -23.32881 -21.15063 -20.47183 -19.47199 -19.16315 -18.73407 -18.34876 -16.95903 -16.38651 -15.71398 -15.36530 -14.84059 -14.67771 -14.55616 -14.48704 -14.24154 -14.04264 -13.93276 -13.92133 -13.75760 -13.37075 -13.21345 -12.88920 -12.58090 -11.90496 -11.76589 -11.49738 -11.03617 -10.94559 -10.51222 -10.27869 -10.04853 -9.88164 -9.72662 -9.61428 -9.14784 -8.86854 -8.48439 -8.08100 -6.98078 -6.09652 -4.15150 0.14220 0.86904 1.24498 1.78405 2.37385 2.54445 3.24811 3.27387 3.33895 3.34446 3.39067 3.82278 4.16489 4.17549 4.38180 4.71887 4.79450 5.06891 5.19494 5.33194 5.36608 5.58023 5.89355 6.14383 6.33460 6.47107 6.68601 6.75720 7.02406 7.21252 7.33842 7.44090 7.83916 8.34192 8.87106 9.51550 10.99358 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.019916 B = 0.003132 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.552347 B = 8938.051592 C = 9568.631401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.073 3.927 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.486 4.486 8 H 0.062 0.938 9 C 0.053 3.947 10 C -0.028 4.028 11 S -0.211 6.211 12 C -0.040 4.040 13 C 0.083 3.917 14 N -0.440 5.440 15 C -0.019 4.019 16 C 0.547 3.453 17 F -0.161 7.161 18 F -0.173 7.173 19 F -0.170 7.170 20 C -0.219 4.219 21 S 0.216 5.784 22 C -0.204 4.204 23 C -0.146 4.146 24 H 0.260 0.740 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.190 0.810 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 -10.000 -14.261 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.130 4.130 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.523 4.523 8 H 0.080 0.920 9 C 0.051 3.949 10 C -0.177 4.177 11 S 0.016 5.984 12 C -0.191 4.191 13 C -0.196 4.196 14 N -0.154 5.154 15 C -0.155 4.155 16 C 0.490 3.510 17 F -0.142 7.142 18 F -0.154 7.154 19 F -0.151 7.151 20 C -0.361 4.361 21 S 0.473 5.527 22 C -0.242 4.242 23 C -0.186 4.186 24 H 0.070 0.930 25 H 0.105 0.895 26 H 0.071 0.929 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.207 0.793 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.737 -9.131 -14.099 17.453 hybrid contribution -0.422 -0.214 -0.280 0.550 sum 4.315 -9.345 -14.380 17.684 Atomic orbital electron populations 1.70000 1.05858 1.26875 1.49080 1.24932 0.94769 0.98864 0.94430 0.86668 0.80083 0.83483 0.78254 1.20522 1.21256 1.19812 1.20384 0.92939 0.88449 1.50576 0.91969 1.18437 0.98376 0.93980 0.84060 1.23205 0.95137 1.00696 0.98627 1.87281 1.17421 1.79149 1.14533 1.21940 0.96536 1.04484 0.96146 1.26234 1.01683 0.91310 1.00334 1.65795 1.09139 1.20544 1.19921 1.19867 1.02231 0.95397 0.98002 1.17227 0.76400 0.83341 0.74071 1.93244 1.85496 1.67394 1.68063 1.93219 1.94982 1.90417 1.36791 1.93238 1.32055 1.95880 1.93977 1.26978 1.06852 0.96058 1.06223 1.84278 1.31606 1.13374 1.23410 1.23036 0.98436 0.95882 1.06828 1.22585 0.92272 1.01176 1.02558 0.93020 0.89468 0.92941 0.87868 0.87368 0.79284 0.91290 0.90225 0.89725 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.70 12.90 55.43 0.71 -22.99 16 2 C 0.07 1.92 5.39 -17.82 -0.10 1.82 16 3 Si 0.89 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.49 -12.70 8.49 -34.44 -0.29 -12.99 16 8 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 9 C 0.05 1.25 1.34 -155.65 -0.21 1.04 16 10 C -0.03 -0.59 5.80 37.16 0.22 -0.37 16 11 S -0.21 -4.01 21.41 -107.50 -2.30 -6.31 16 12 C -0.04 -0.58 6.52 36.01 0.23 -0.35 16 13 C 0.08 1.15 6.65 -13.46 -0.09 1.06 16 14 N -0.44 -6.57 10.14 -8.06 -0.08 -6.65 16 15 C -0.02 -0.24 6.16 -84.23 -0.52 -0.76 16 16 C 0.55 6.63 3.39 36.01 0.12 6.75 16 17 F -0.16 -2.20 17.01 2.25 0.04 -2.16 16 18 F -0.17 -1.88 17.22 2.25 0.04 -1.84 16 19 F -0.17 -2.03 17.30 2.25 0.04 -1.99 16 20 C -0.22 -2.23 11.05 29.12 0.32 -1.91 16 21 S 0.22 2.35 23.18 -107.50 -2.49 -0.15 16 22 C -0.20 -4.37 9.96 -26.69 -0.27 -4.63 16 23 C -0.15 -3.27 9.40 -26.69 -0.25 -3.52 16 24 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 25 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 26 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 27 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.11 1.47 8.14 -51.92 -0.42 1.05 16 29 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 32 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 333.45 15.07 5.02 5.02 Total: -1.00 -28.06 333.45 -8.22 -36.28 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -3.35 Total: -0.84 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -0.83 Total: -13.85 kcal Atomic # 7 Polarization: -30.27 SS G_CDS: 0.63 Total: -29.64 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.12 Total: -6.00 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -4.79 Total: -6.46 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.06 -8.22 -36.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596348024.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.243 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds