Wall clock time and date at job start Fri Apr 10 2020 16:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46735 * 2 1 4 4 N 1.46499 * 109.46984 * 119.99699 * 2 1 3 5 5 C 1.34780 * 119.99997 * 275.00604 * 4 2 1 6 6 O 1.21586 * 120.00188 * 359.97438 * 5 4 2 7 7 N 1.34772 * 120.00052 * 180.02562 * 5 4 2 8 8 C 1.46504 * 120.00254 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47236 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.46982 * 299.99627 * 9 8 7 11 11 C 1.53003 * 109.47405 * 59.99521 * 9 8 7 12 12 C 1.52996 * 109.47229 * 179.97438 * 9 8 7 13 13 C 1.50706 * 109.47439 * 179.97438 * 12 9 8 14 14 H 1.07999 * 119.99758 * 359.97438 * 13 12 9 15 15 C 1.37878 * 119.99922 * 180.02562 * 13 12 9 16 16 N 1.31514 * 120.00265 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99714 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46851 * 60.00302 * 17 15 13 19 19 H 1.48496 * 109.47228 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47310 * 300.00042 * 17 15 13 21 21 C 1.50696 * 109.47278 * 239.99656 * 2 1 3 22 22 C 1.38632 * 120.80224 * 265.00120 * 21 2 1 23 23 C 1.38188 * 119.19163 * 180.25936 * 22 21 2 24 24 N 1.31875 * 120.81868 * 359.42258 * 23 22 21 25 25 C 1.31840 * 121.75492 * 0.59057 * 24 23 22 26 26 C 1.38471 * 120.72187 * 359.70387 * 25 24 23 27 27 F 1.35097 * 120.43916 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.46735 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47495 * 300.00070 * 1 2 3 30 30 H 1.09004 * 109.47176 * 60.00582 * 1 2 3 31 31 H 0.97001 * 120.00317 * 95.00189 * 4 2 1 32 32 H 0.97001 * 120.00261 * 359.97438 * 7 5 4 33 33 H 1.09007 * 109.46155 * 299.99173 * 8 7 5 34 34 H 1.08995 * 109.47185 * 59.99410 * 8 7 5 35 35 H 1.08992 * 109.47492 * 60.00106 * 10 9 8 36 36 H 1.09004 * 109.47234 * 180.02562 * 10 9 8 37 37 H 1.09004 * 109.46967 * 299.99671 * 10 9 8 38 38 H 1.08998 * 109.47065 * 60.00102 * 11 9 8 39 39 H 1.09004 * 109.47113 * 180.02562 * 11 9 8 40 40 H 1.09000 * 109.47230 * 299.99620 * 11 9 8 41 41 H 1.08998 * 109.47115 * 299.99820 * 12 9 8 42 42 H 1.09002 * 109.47163 * 59.99419 * 12 9 8 43 43 H 0.96993 * 119.99810 * 179.97438 * 16 15 13 44 44 H 1.08002 * 120.40059 * 359.97438 * 22 21 2 45 45 H 1.07995 * 119.59089 * 179.70240 * 23 22 21 46 46 H 1.08002 * 119.64138 * 179.68331 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1469 -0.0181 2.3572 6 8 1.8581 1.1617 2.4117 7 7 2.5966 -0.6533 3.4575 8 6 2.7359 0.0774 4.7197 9 6 3.2603 -0.8687 5.8016 10 6 2.2766 -2.0256 5.9880 11 6 4.6231 -1.4212 5.3790 12 6 3.4064 -0.1055 7.1195 13 6 3.9224 -1.0376 8.1854 14 1 4.1255 -2.0711 7.9467 15 6 4.1343 -0.5711 9.4654 16 7 3.8865 0.6874 9.7562 17 14 4.7732 -1.7266 10.7867 18 1 6.0957 -2.2638 10.3771 19 1 4.9151 -0.9858 12.0659 20 1 3.8175 -2.8487 10.9674 21 6 2.0324 -0.7105 -1.2304 22 6 2.3669 -2.0551 -1.1868 23 6 2.8293 -2.6721 -2.3336 24 7 2.9434 -2.0007 -3.4629 25 6 2.6353 -0.7214 -3.5438 26 6 2.1710 -0.0341 -2.4349 27 9 1.8565 1.2767 -2.5243 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 2.2490 -1.6317 1.1527 32 1 2.8274 -1.5944 3.4141 33 1 3.4365 0.9018 4.5867 34 1 1.7650 0.4707 5.0209 35 1 2.1729 -2.5692 5.0490 36 1 2.6500 -2.6994 6.7591 37 1 1.3057 -1.6319 6.2891 38 1 5.3240 -0.5971 5.2462 39 1 4.9965 -2.0957 6.1497 40 1 4.5195 -1.9650 4.4401 41 1 4.1074 0.7185 6.9864 42 1 2.4357 0.2885 7.4207 43 1 4.0352 1.0154 10.6568 44 1 2.2716 -2.6125 -0.2667 45 1 3.0963 -3.7181 -2.3058 46 1 2.7467 -0.2036 -4.4850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355965521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 16:01:57 Heat of formation + Delta-G solvation = -53.444052 kcal Electronic energy + Delta-G solvation = -27039.507921 eV Core-core repulsion = 23071.335609 eV Total energy + Delta-G solvation = -3968.172312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.41268 -40.86211 -39.87770 -37.51621 -36.13817 -33.68764 -32.61030 -31.94223 -31.47637 -30.02285 -27.12120 -26.54002 -26.15998 -25.07505 -24.09898 -22.99750 -21.79418 -20.68055 -19.11587 -18.27698 -17.83899 -17.49609 -16.81792 -16.33807 -16.28451 -15.87566 -15.41717 -14.94389 -14.63506 -14.50647 -14.33063 -14.14421 -14.06262 -13.80341 -13.58111 -13.16194 -13.06092 -12.77578 -12.64560 -12.35671 -12.17678 -12.07051 -11.63141 -11.18183 -11.02378 -10.89037 -10.65170 -10.42155 -10.28821 -10.22782 -10.15855 -10.12630 -9.89679 -9.51565 -9.32923 -9.22667 -8.95604 -8.65529 -8.36989 -6.01053 -4.02583 0.39505 0.48903 2.62054 3.09324 3.29553 3.30727 3.36459 3.37309 3.51473 3.82572 3.94903 4.16660 4.23565 4.34854 4.44470 4.82070 4.89270 4.96983 5.14061 5.22366 5.31072 5.34259 5.41829 5.45825 5.61461 5.64142 5.72216 5.89848 6.07079 6.14317 6.18139 6.24021 6.29287 6.38214 6.55662 6.60228 6.74567 6.91507 7.03966 7.05190 7.11664 7.28313 7.62532 7.74889 7.97218 8.06654 8.38800 8.68089 9.01932 9.60469 11.10333 Molecular weight = 323.18amu Principal moments of inertia in cm(-1) A = 0.027413 B = 0.002207 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.169394 B =12681.766771 C =13193.841736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.203 3.797 3 H 0.107 0.893 4 N -0.748 5.748 5 C 0.702 3.298 6 O -0.589 6.589 7 N -0.735 5.735 8 C 0.146 3.854 9 C -0.072 4.072 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.036 3.964 13 C -0.512 4.512 14 H 0.059 0.941 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.076 4.076 22 C -0.141 4.141 23 C 0.095 3.905 24 N -0.460 5.460 25 C 0.080 3.920 26 C 0.057 3.943 27 F -0.123 7.123 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.393 0.607 32 H 0.394 0.606 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.027 0.973 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.144 0.856 45 H 0.167 0.833 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 -7.147 -25.205 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.097 3.903 3 H 0.125 0.875 4 N -0.407 5.407 5 C 0.402 3.598 6 O -0.467 6.467 7 N -0.390 5.390 8 C 0.023 3.977 9 C -0.072 4.072 10 C -0.183 4.183 11 C -0.183 4.183 12 C -0.001 4.001 13 C -0.550 4.550 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.086 4.086 22 C -0.161 4.161 23 C -0.062 4.062 24 N -0.168 5.168 25 C -0.079 4.079 26 C 0.035 3.965 27 F -0.102 7.102 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.228 0.772 32 H 0.228 0.772 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.161 0.839 45 H 0.184 0.816 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.407 -6.284 -25.703 26.824 hybrid contribution 0.230 -0.796 1.547 1.755 sum -4.178 -7.080 -24.155 25.516 Atomic orbital electron populations 1.22175 0.93359 1.02622 1.03483 1.19458 0.94511 0.96691 0.79647 0.87530 1.45221 1.73067 1.13511 1.08857 1.15952 0.78525 0.85132 0.80186 1.90932 1.56983 1.14260 1.84481 1.45370 1.70089 1.13937 1.09565 1.21519 1.01073 0.94509 0.80578 1.20912 0.94516 0.95473 0.96346 1.21752 0.98952 0.98101 0.99523 1.21754 0.96893 1.00700 0.98988 1.19088 0.97408 0.95016 0.88633 1.21133 1.43547 0.96226 0.94105 0.92337 1.25015 0.95831 0.94988 0.98668 1.69951 1.48875 1.14124 1.20379 0.86708 0.79393 0.80919 0.81249 1.20344 1.21402 1.20341 1.20602 0.98234 0.94966 0.94769 1.21885 0.99872 0.93601 1.00760 1.22869 0.95136 1.00672 0.87482 1.67752 1.14027 1.07263 1.27742 1.22962 0.96308 0.90805 0.97827 1.18586 1.02791 0.79695 0.95384 1.91554 1.90321 1.31650 1.96650 0.92133 0.90526 0.91472 0.77164 0.77166 0.91935 0.91917 0.95357 0.91465 0.93353 0.93356 0.91465 0.95371 0.96298 0.96301 0.92963 0.83871 0.81609 0.81302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.47 37.16 0.35 -1.09 16 2 C 0.20 2.01 2.62 -69.08 -0.18 1.83 16 3 H 0.11 1.31 7.31 -51.93 -0.38 0.93 16 4 N -0.75 -7.59 5.01 -59.81 -0.30 -7.89 16 5 C 0.70 10.19 8.53 -86.92 -0.74 9.45 16 6 O -0.59 -11.10 16.01 5.29 0.08 -11.01 16 7 N -0.73 -10.17 4.96 -65.23 -0.32 -10.49 16 8 C 0.15 2.54 4.56 -4.04 -0.02 2.52 16 9 C -0.07 -1.32 0.54 -154.51 -0.08 -1.41 16 10 C -0.13 -2.12 8.05 37.16 0.30 -1.83 16 11 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 12 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 13 C -0.51 -13.39 7.65 -34.44 -0.26 -13.65 16 14 H 0.06 1.46 5.68 -52.49 -0.30 1.17 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 17 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.08 -0.63 5.09 -104.26 -0.53 -1.16 16 22 C -0.14 -0.88 9.31 -39.45 -0.37 -1.24 16 23 C 0.10 0.60 11.18 -17.55 -0.20 0.40 16 24 N -0.46 -3.76 10.36 -13.20 -0.14 -3.90 16 25 C 0.08 0.60 11.17 -17.46 -0.20 0.41 16 26 C 0.06 0.49 7.29 -39.27 -0.29 0.20 16 27 F -0.12 -1.17 16.70 2.25 0.04 -1.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.39 2.78 6.31 -40.82 -0.26 2.52 16 32 H 0.39 4.43 6.18 -40.82 -0.25 4.18 16 33 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 36 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 40 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.14 0.55 6.19 -52.49 -0.33 0.23 16 45 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 46 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -32.38 376.52 -8.07 -40.45 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.70 Total: 3.01 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.12 Total: -5.20 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.02 Total: -47.76 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.38 -8.07 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355965521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.995 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds