Wall clock time and date at job start Fri Apr 10 2020 17:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 119.99897 * 2 1 4 4 C 1.52995 * 109.47070 * 123.81272 * 3 2 1 5 5 C 1.53001 * 109.46989 * 302.84656 * 4 3 2 6 6 C 1.50702 * 109.47084 * 293.95580 * 5 4 3 7 7 C 1.31004 * 119.99690 * 124.99684 * 6 5 4 8 8 C 1.50703 * 109.47269 * 62.84277 * 4 3 2 9 9 O 1.21284 * 120.00329 * 240.00240 * 8 4 3 10 10 N 1.34779 * 119.99867 * 60.00058 * 8 4 3 11 11 C 1.46495 * 119.99928 * 180.02562 * 10 8 4 12 12 H 1.09000 * 112.85087 * 316.16107 * 11 10 8 13 13 C 1.53786 * 113.61649 * 87.35640 * 11 10 8 14 14 C 1.53778 * 87.07994 * 89.19963 * 13 11 10 15 15 H 1.09003 * 113.61414 * 140.06774 * 14 13 11 16 16 N 1.46507 * 113.61464 * 270.88460 * 14 13 11 17 17 C 1.36938 * 120.00145 * 200.88580 * 16 14 13 18 18 H 1.08003 * 119.99515 * 359.97438 * 17 16 14 19 19 C 1.38806 * 119.99979 * 180.02562 * 17 16 14 20 20 N 1.31615 * 120.00368 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00074 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47399 * 89.99346 * 21 19 17 23 23 H 1.48498 * 109.46812 * 329.99734 * 21 19 17 24 24 H 1.48492 * 109.47403 * 209.99632 * 21 19 17 25 25 C 1.53772 * 87.08102 * 25.43338 * 14 13 11 26 26 H 1.08005 * 119.99975 * 0.02562 * 1 2 3 27 27 H 1.07991 * 120.00069 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00286 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46885 * 3.80929 * 3 2 1 30 30 H 1.09003 * 109.46962 * 243.81047 * 3 2 1 31 31 H 1.08996 * 109.47165 * 182.84368 * 4 3 2 32 32 H 1.09000 * 109.47534 * 53.96119 * 5 4 3 33 33 H 1.09004 * 109.46763 * 173.96265 * 5 4 3 34 34 H 1.07994 * 120.00438 * 305.00738 * 6 5 4 35 35 H 1.07999 * 119.99963 * 180.02562 * 7 6 5 36 36 H 1.07994 * 119.99872 * 0.02562 * 7 6 5 37 37 H 0.97000 * 119.99938 * 0.02562 * 10 8 4 38 38 H 1.09002 * 113.61300 * 334.64816 * 13 11 10 39 39 H 1.08994 * 113.69362 * 203.76072 * 13 11 10 40 40 H 0.97002 * 119.99602 * 20.88277 * 16 14 13 41 41 H 0.97000 * 119.99772 * 0.02562 * 20 19 17 42 42 H 1.09005 * 113.61522 * 89.11984 * 25 14 13 43 43 H 1.09009 * 113.61562 * 220.01409 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0136 1.3455 1.1985 5 6 2.2152 1.1510 2.4890 6 6 1.2988 2.3295 2.6953 7 6 0.0129 2.1388 2.8571 8 6 4.0338 0.2439 1.0681 9 8 4.1143 -0.6124 1.9232 10 7 4.8567 0.2103 0.0012 11 6 5.8479 -0.8608 -0.1258 12 1 6.3698 -1.0676 0.8086 13 6 5.3072 -2.1214 -0.8212 14 6 5.7506 -1.4838 -2.1485 15 1 6.1926 -2.1937 -2.8477 16 7 4.7241 -0.6408 -2.7665 17 6 4.7840 -0.3593 -4.1053 18 1 5.5882 -0.7585 -4.7055 19 6 3.8116 0.4398 -4.6906 20 7 2.8318 0.9267 -3.9591 21 14 3.8929 0.8232 -6.5171 22 1 3.1444 -0.2123 -7.2741 23 1 5.3107 0.8308 -6.9586 24 1 3.2883 2.1555 -6.7706 25 6 6.7870 -0.6939 -1.3320 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3571 2.1325 0.0683 30 1 2.6380 1.3930 -0.9222 31 1 3.5215 2.3095 1.2272 32 1 1.6231 0.2387 2.4161 33 1 2.9013 1.0724 3.3324 34 1 1.7022 3.3312 2.7095 35 1 -0.6439 2.9834 3.0045 36 1 -0.3904 1.1371 2.8431 37 1 4.7925 0.8954 -0.6825 38 1 4.2272 -2.2395 -0.7328 39 1 5.8543 -3.0297 -0.5688 40 1 4.0020 -0.2820 -2.2272 41 1 2.7894 0.7273 -3.0107 42 1 7.7398 -1.2111 -1.2186 43 1 6.9018 0.3406 -1.6561 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265540470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:40 Heat of formation + Delta-G solvation = 25.569724 kcal Electronic energy + Delta-G solvation = -22740.290978 eV Core-core repulsion = 19594.188606 eV Total energy + Delta-G solvation = -3146.102372 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18764 -38.34517 -36.31391 -33.95820 -33.71895 -32.64422 -30.81520 -29.54346 -26.34050 -25.24956 -24.51724 -23.64276 -22.11335 -20.35192 -19.91238 -19.02513 -18.73667 -17.49835 -16.50084 -15.78177 -15.59940 -15.09642 -14.85135 -14.72741 -14.41918 -13.85038 -13.72474 -13.38381 -13.24119 -13.00015 -12.31927 -12.12083 -12.00361 -11.71230 -11.52286 -11.41953 -11.23337 -10.96602 -10.83418 -10.55717 -10.49294 -10.38758 -10.06823 -9.80729 -9.44892 -9.27024 -9.21630 -8.99203 -8.95407 -8.57285 -7.13347 -6.17629 -3.19324 2.30000 2.61570 2.94367 3.47705 3.49378 3.51999 3.65792 4.59443 4.78016 4.85352 5.01770 5.10186 5.12128 5.19083 5.28411 5.36938 5.42273 5.45854 5.52863 5.61187 5.75705 5.82809 5.85692 5.98264 5.98428 6.07821 6.15484 6.21456 6.25482 6.31831 6.32124 6.52924 6.57581 6.65067 6.75225 6.81558 6.95944 7.02030 7.08729 7.77116 7.86437 8.53948 8.67589 9.14146 9.99171 10.14812 11.29556 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.006158 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.914803 B = 4545.996506 C = 5837.022623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.086 4.086 4 C -0.099 4.099 5 C -0.073 4.073 6 C -0.148 4.148 7 C -0.194 4.194 8 C 0.521 3.479 9 O -0.549 6.549 10 N -0.704 5.704 11 C 0.128 3.872 12 H 0.080 0.920 13 C -0.168 4.168 14 C 0.170 3.830 15 H 0.063 0.937 16 N -0.717 5.717 17 C -0.336 4.336 18 H 0.067 0.933 19 C -0.042 4.042 20 N -0.939 5.939 21 Si 1.082 2.918 22 H -0.296 1.296 23 H -0.295 1.295 24 H -0.288 1.288 25 C -0.179 4.179 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.407 0.593 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.369 0.631 41 H 0.255 0.745 42 H 0.083 0.917 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 1.571 10.772 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.153 4.153 3 C -0.124 4.124 4 C -0.121 4.121 5 C -0.111 4.111 6 C -0.166 4.166 7 C -0.230 4.230 8 C 0.307 3.693 9 O -0.427 6.427 10 N -0.356 5.356 11 C 0.022 3.978 12 H 0.098 0.902 13 C -0.208 4.208 14 C 0.057 3.943 15 H 0.081 0.919 16 N -0.359 5.359 17 C -0.466 4.466 18 H 0.085 0.915 19 C -0.240 4.240 20 N -0.584 5.584 21 Si 0.913 3.087 22 H -0.223 1.223 23 H -0.222 1.222 24 H -0.214 1.214 25 C -0.220 4.220 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.243 0.757 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.203 0.797 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.411 1.701 9.944 10.097 hybrid contribution 0.590 -0.450 0.986 1.234 sum 0.178 1.251 10.930 11.003 Atomic orbital electron populations 1.23685 0.95786 1.01332 1.02426 1.22753 0.96098 0.97988 0.98505 1.20798 0.98151 0.96450 0.96967 1.21300 0.95322 0.98195 0.97256 1.20574 0.97576 0.97008 0.95935 1.22920 0.95666 0.98777 0.99263 1.23821 0.95967 1.01645 1.01599 1.20575 0.81163 0.86456 0.81093 1.90649 1.70624 1.40056 1.41330 1.45874 1.35974 1.29395 1.24365 1.21700 0.90087 0.88182 0.97808 0.90167 1.23836 1.01481 0.97048 0.98414 1.21104 0.89788 0.91878 0.91484 0.91900 1.42268 1.27740 1.58503 1.07359 1.20117 1.11309 1.29909 0.85310 0.91545 1.25755 0.94131 0.97477 1.06596 1.70900 1.32827 1.47315 1.07404 0.83195 0.74852 0.76484 0.74154 1.22344 1.22172 1.21394 1.24126 0.98253 1.02829 0.96835 0.88680 0.89016 0.87979 0.90267 0.89478 0.88539 0.90432 0.90526 0.87595 0.88805 0.88531 0.75681 0.91601 0.89724 0.79680 0.93354 0.89872 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.85 14.32 29.02 0.42 -2.44 16 2 C -0.14 -2.17 7.54 -36.02 -0.27 -2.44 16 3 C -0.09 -1.30 5.16 -27.88 -0.14 -1.44 16 4 C -0.10 -1.38 2.48 -91.77 -0.23 -1.60 16 5 C -0.07 -0.96 4.32 -27.88 -0.12 -1.08 16 6 C -0.15 -1.65 8.60 -36.03 -0.31 -1.96 16 7 C -0.19 -2.04 14.32 29.01 0.42 -1.63 16 8 C 0.52 8.61 6.30 -10.98 -0.07 8.54 16 9 O -0.55 -10.52 15.80 5.55 0.09 -10.43 16 10 N -0.70 -11.68 4.28 -53.02 -0.23 -11.91 16 11 C 0.13 2.11 4.02 -67.12 -0.27 1.84 16 12 H 0.08 1.30 7.99 -51.93 -0.42 0.88 16 13 C -0.17 -2.92 7.61 -25.92 -0.20 -3.12 16 14 C 0.17 3.31 4.55 -67.12 -0.31 3.01 16 15 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 16 N -0.72 -16.92 4.97 -52.64 -0.26 -17.18 16 17 C -0.34 -8.98 9.98 -15.06 -0.15 -9.13 16 18 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 19 C -0.04 -1.15 5.50 -17.43 -0.10 -1.24 16 20 N -0.94 -27.09 13.70 55.49 0.76 -26.33 16 21 Si 1.08 25.05 29.92 -169.99 -5.09 19.97 16 22 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.18 -2.96 7.57 -25.93 -0.20 -3.15 16 26 H 0.09 1.28 7.84 -52.48 -0.41 0.87 16 27 H 0.09 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.10 1.82 7.72 -52.49 -0.41 1.41 16 29 H 0.08 1.10 7.15 -51.93 -0.37 0.73 16 30 H 0.09 1.52 6.72 -51.93 -0.35 1.17 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.11 6.57 -51.93 -0.34 0.77 16 33 H 0.08 1.03 7.92 -51.93 -0.41 0.61 16 34 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.09 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.10 1.04 7.84 -52.49 -0.41 0.63 16 37 H 0.41 6.97 7.11 -40.82 -0.29 6.68 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.37 8.77 5.22 -40.82 -0.21 8.56 16 41 H 0.25 7.10 6.01 -40.82 -0.25 6.86 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 LS Contribution 351.19 15.07 5.29 5.29 Total: -1.00 -30.07 351.19 -7.84 -37.91 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -6.87 Total: 18.54 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.53 Total: -15.85 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.27 Total: -55.42 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.09 Total: 19.97 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.07 -7.84 -37.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265540470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.477 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds