Wall clock time and date at job start Fri Apr 10 2020 17:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99903 * 2 1 4 4 C 1.52998 * 109.46761 * 124.99410 * 3 2 1 5 5 C 1.50704 * 109.46761 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00143 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99859 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99754 * 180.02562 * 7 5 4 9 9 H 1.09000 * 115.56799 * 350.70419 * 8 7 5 10 10 C 1.53029 * 117.50329 * 136.41576 * 8 7 5 11 11 C 1.52818 * 117.50083 * 205.00016 * 8 7 5 12 12 C 1.53189 * 117.71407 * 144.90269 * 11 8 7 13 13 C 1.53344 * 108.76625 * 158.88415 * 12 11 8 14 14 N 1.46838 * 108.81645 * 51.31113 * 13 12 11 15 15 C 1.36945 * 120.38341 * 123.07694 * 14 13 12 16 16 H 1.07999 * 120.00039 * 331.82479 * 15 14 13 17 17 C 1.38811 * 120.00074 * 151.82043 * 15 14 13 18 18 N 1.31620 * 120.00180 * 159.30813 * 17 15 14 19 19 Si 1.86803 * 120.00219 * 339.31452 * 17 15 14 20 20 H 1.48502 * 109.47068 * 94.25442 * 19 17 15 21 21 H 1.48498 * 109.47256 * 214.25496 * 19 17 15 22 22 H 1.48496 * 109.46788 * 334.25399 * 19 17 15 23 23 C 1.46840 * 119.23846 * 303.09620 * 14 13 12 24 24 C 1.53189 * 117.71504 * 0.13916 * 11 8 7 25 25 H 1.08006 * 119.99796 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00407 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99936 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46756 * 4.99945 * 3 2 1 29 29 H 1.08999 * 109.46822 * 245.00085 * 3 2 1 30 30 H 1.09001 * 109.47048 * 60.00715 * 4 3 2 31 31 H 1.08990 * 109.47994 * 300.00177 * 4 3 2 32 32 H 0.96999 * 120.00346 * 0.02562 * 7 5 4 33 33 H 1.08999 * 117.50186 * 359.97438 * 10 8 7 34 34 H 1.09005 * 117.50560 * 214.95294 * 10 8 7 35 35 H 1.08997 * 109.58598 * 39.09516 * 12 11 8 36 36 H 1.09007 * 109.58598 * 278.66726 * 12 11 8 37 37 H 1.09003 * 109.58141 * 291.50945 * 13 12 11 38 38 H 1.09003 * 109.57762 * 171.11437 * 13 12 11 39 39 H 0.96993 * 120.00487 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.58553 * 176.69657 * 23 14 13 41 41 H 1.08998 * 109.58006 * 297.10624 * 23 14 13 42 42 H 1.09003 * 109.58518 * 81.32624 * 24 11 8 43 43 H 1.09001 * 109.58606 * 320.90373 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.7888 2.6380 1.1814 6 8 3.5704 3.4643 0.3210 7 7 4.7059 2.8867 2.1372 8 6 5.4384 4.1554 2.1372 9 1 5.3040 4.7761 1.2514 10 6 5.6168 4.8684 3.4794 11 6 6.8081 4.1794 2.8144 12 6 7.8918 5.0700 2.1986 13 6 8.9527 5.3653 3.2657 14 7 9.3878 4.0972 3.8647 15 6 10.7098 3.7404 3.8470 16 1 11.3545 4.0956 3.0567 17 6 11.2213 2.9223 4.8449 18 7 12.3350 2.2514 4.6396 19 14 10.3291 2.7732 6.4793 20 1 9.4266 1.5944 6.4448 21 1 11.3212 2.6053 7.5714 22 1 9.5301 4.0014 6.7208 23 6 8.3890 3.2158 4.4824 24 6 7.3164 2.8768 3.4402 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4026 -0.9314 30 1 3.7399 0.5066 1.0922 31 1 2.4772 1.2356 2.1130 32 1 4.8810 2.2256 2.8251 33 1 5.1888 4.3938 4.3623 34 1 5.5997 5.9583 3.4766 35 1 7.4464 6.0046 1.8576 36 1 8.3538 4.5543 1.3567 37 1 8.5263 6.0065 4.0372 38 1 9.8058 5.8633 2.8046 39 1 12.6922 1.6795 5.3368 40 1 8.8709 2.2991 4.8221 41 1 7.9276 3.7237 5.3293 42 1 7.7474 2.2429 2.6652 43 1 6.4893 2.3562 3.9229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266365499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:45 Heat of formation + Delta-G solvation = 21.617480 kcal Electronic energy + Delta-G solvation = -21640.642319 eV Core-core repulsion = 18494.368565 eV Total energy + Delta-G solvation = -3146.273754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.12802 -38.68504 -35.92961 -35.46369 -33.24194 -31.76458 -30.80431 -30.54942 -28.65866 -24.96401 -24.19371 -23.04810 -21.96016 -21.01760 -20.29766 -20.07093 -18.44355 -17.19604 -16.69276 -16.04914 -15.99817 -15.27650 -14.98703 -14.35989 -14.16361 -14.08886 -13.80375 -13.61964 -13.06733 -12.81409 -12.73056 -12.46594 -12.39209 -12.01660 -11.97572 -11.73701 -11.36182 -11.31396 -11.18364 -10.80319 -10.60710 -10.37485 -10.04469 -9.97969 -9.79994 -9.64894 -9.49927 -9.46053 -8.75679 -8.46659 -6.95703 -5.96516 -3.32234 1.95372 2.51754 3.06049 3.28213 3.46273 3.49468 4.02957 4.45917 4.50853 4.62704 4.80584 4.82539 4.92801 4.96626 5.00391 5.04016 5.12674 5.29960 5.30738 5.40841 5.53405 5.68543 5.73666 5.84342 5.88191 5.90600 5.97997 6.03833 6.14501 6.30421 6.31964 6.35156 6.41019 6.46139 6.50356 6.59633 6.67563 6.69569 6.94471 7.43719 7.96877 8.15282 8.32456 8.94297 9.71159 10.09415 11.19572 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025972 B = 0.003565 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.812093 B = 7852.660653 C = 8360.806937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.514 3.486 6 O -0.545 6.545 7 N -0.698 5.698 8 C 0.074 3.926 9 H 0.133 0.867 10 C -0.185 4.185 11 C -0.102 4.102 12 C -0.098 4.098 13 C 0.152 3.848 14 N -0.604 5.604 15 C -0.260 4.260 16 H 0.085 0.915 17 C 0.022 3.978 18 N -0.908 5.908 19 Si 0.882 3.118 20 H -0.290 1.290 21 H -0.304 1.304 22 H -0.270 1.270 23 C 0.132 3.868 24 C -0.098 4.098 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.402 0.598 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.262 0.738 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.372 -1.743 -4.831 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.117 4.117 4 C -0.177 4.177 5 C 0.301 3.699 6 O -0.422 6.422 7 N -0.348 5.348 8 C -0.032 4.032 9 H 0.150 0.850 10 C -0.223 4.223 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.026 3.974 14 N -0.327 5.327 15 C -0.388 4.388 16 H 0.102 0.898 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.713 3.287 20 H -0.218 1.218 21 H -0.232 1.232 22 H -0.195 1.195 23 C 0.006 3.994 24 C -0.137 4.137 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.237 0.763 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.382 -1.249 -5.392 21.120 hybrid contribution -0.344 -0.603 1.462 1.619 sum -20.726 -1.851 -3.930 21.176 Atomic orbital electron populations 1.23880 0.95987 1.01867 1.01396 1.22998 0.96104 0.98431 0.99678 1.20501 0.97762 0.95349 0.98058 1.21630 0.99108 0.95694 1.01242 1.20698 0.79378 0.88890 0.80890 1.90685 1.65866 1.48334 1.37292 1.45463 1.39845 1.18988 1.30486 1.21843 0.96177 0.87615 0.97522 0.84953 1.23559 1.02632 1.00029 0.96117 1.21924 0.88770 0.98656 1.01022 1.21677 0.95677 0.97130 0.99298 1.20882 0.95245 0.87934 0.93308 1.44278 1.03783 1.16966 1.67714 1.18946 0.84279 1.28493 1.07092 0.89752 1.25307 0.95870 0.98495 0.97958 1.69838 1.22685 1.28929 1.33680 0.86935 0.78298 0.77928 0.85529 1.21761 1.23195 1.19499 1.21273 0.89908 0.94875 0.93323 1.21628 0.98241 0.94145 0.99696 0.88520 0.88545 0.87249 0.90746 0.90101 0.88584 0.88810 0.76297 0.88971 0.88294 0.92426 0.91364 0.95811 0.91682 0.92787 0.91012 0.95627 0.91047 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 14.32 29.01 0.42 -0.96 16 2 C -0.15 -1.16 9.52 -36.02 -0.34 -1.50 16 3 C -0.08 -0.71 4.95 -27.88 -0.14 -0.84 16 4 C -0.14 -1.16 5.68 -27.88 -0.16 -1.32 16 5 C 0.51 6.30 7.83 -10.98 -0.09 6.21 16 6 O -0.54 -8.70 15.55 5.56 0.09 -8.61 16 7 N -0.70 -8.24 5.35 -53.88 -0.29 -8.53 16 8 C 0.07 1.00 6.14 -68.01 -0.42 0.59 16 9 H 0.13 1.94 7.40 -51.93 -0.38 1.55 16 10 C -0.18 -2.42 9.86 -26.80 -0.26 -2.68 16 11 C -0.10 -1.55 1.94 -154.49 -0.30 -1.85 16 12 C -0.10 -1.59 5.83 -26.46 -0.15 -1.74 16 13 C 0.15 2.93 6.51 -3.68 -0.02 2.91 16 14 N -0.60 -14.06 2.71 -172.27 -0.47 -14.52 16 15 C -0.26 -7.17 10.00 -15.06 -0.15 -7.32 16 16 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 17 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 18 N -0.91 -27.65 13.97 55.49 0.78 -26.87 16 19 Si 0.88 22.06 24.40 -169.99 -4.15 17.91 16 20 H -0.29 -6.93 6.66 56.52 0.38 -6.55 16 21 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 22 H -0.27 -6.64 6.65 56.52 0.38 -6.26 16 23 C 0.13 2.78 4.23 -3.68 -0.02 2.76 16 24 C -0.10 -1.63 5.37 -26.45 -0.14 -1.77 16 25 H 0.10 0.57 8.06 -52.48 -0.42 0.14 16 26 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 27 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.07 0.73 7.75 -51.93 -0.40 0.32 16 29 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 3.98 7.12 -40.82 -0.29 3.69 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.80 8.10 -51.93 -0.42 0.37 16 36 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.25 7.92 -51.93 -0.41 0.84 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.07 1.66 4.31 -51.93 -0.22 1.44 16 41 H 0.03 0.54 7.27 -51.93 -0.38 0.16 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.05 0.66 6.75 -51.93 -0.35 0.31 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -32.08 341.83 -7.86 -39.94 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.11 Total: 2.50 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.87 Total: -6.96 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.02 Total: -49.92 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.15 Total: 17.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.08 -7.86 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266365499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.560 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds