Wall clock time and date at job start Fri Apr 10 2020 17:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99903 * 2 1 4 4 C 1.52998 * 109.46761 * 124.99410 * 3 2 1 5 5 C 1.50704 * 109.46761 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00143 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99859 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99754 * 180.02562 * 7 5 4 9 9 H 1.09000 * 115.56799 * 350.70419 * 8 7 5 10 10 C 1.53029 * 117.50329 * 136.41576 * 8 7 5 11 11 C 1.52818 * 117.50083 * 205.00016 * 8 7 5 12 12 C 1.53189 * 117.71407 * 144.90269 * 11 8 7 13 13 C 1.53344 * 108.76625 * 158.88415 * 12 11 8 14 14 N 1.46838 * 108.81645 * 51.31113 * 13 12 11 15 15 C 1.36945 * 120.38341 * 123.07694 * 14 13 12 16 16 H 1.07999 * 120.00039 * 331.82479 * 15 14 13 17 17 C 1.38811 * 120.00074 * 151.82043 * 15 14 13 18 18 N 1.31620 * 120.00180 * 159.30813 * 17 15 14 19 19 Si 1.86803 * 120.00219 * 339.31452 * 17 15 14 20 20 H 1.48502 * 109.47068 * 94.25442 * 19 17 15 21 21 H 1.48498 * 109.47256 * 214.25496 * 19 17 15 22 22 H 1.48496 * 109.46788 * 334.25399 * 19 17 15 23 23 C 1.46840 * 119.23846 * 303.09620 * 14 13 12 24 24 C 1.53189 * 117.71504 * 0.13916 * 11 8 7 25 25 H 1.08006 * 119.99796 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00407 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99936 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46756 * 4.99945 * 3 2 1 29 29 H 1.08999 * 109.46822 * 245.00085 * 3 2 1 30 30 H 1.09001 * 109.47048 * 60.00715 * 4 3 2 31 31 H 1.08990 * 109.47994 * 300.00177 * 4 3 2 32 32 H 0.96999 * 120.00346 * 0.02562 * 7 5 4 33 33 H 1.08999 * 117.50186 * 359.97438 * 10 8 7 34 34 H 1.09005 * 117.50560 * 214.95294 * 10 8 7 35 35 H 1.08997 * 109.58598 * 39.09516 * 12 11 8 36 36 H 1.09007 * 109.58598 * 278.66726 * 12 11 8 37 37 H 1.09003 * 109.58141 * 291.50945 * 13 12 11 38 38 H 1.09003 * 109.57762 * 171.11437 * 13 12 11 39 39 H 0.96993 * 120.00487 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.58553 * 176.69657 * 23 14 13 41 41 H 1.08998 * 109.58006 * 297.10624 * 23 14 13 42 42 H 1.09003 * 109.58518 * 81.32624 * 24 11 8 43 43 H 1.09001 * 109.58606 * 320.90373 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.7888 2.6380 1.1814 6 8 3.5704 3.4643 0.3210 7 7 4.7059 2.8867 2.1372 8 6 5.4384 4.1554 2.1372 9 1 5.3040 4.7761 1.2514 10 6 5.6168 4.8684 3.4794 11 6 6.8081 4.1794 2.8144 12 6 7.8918 5.0700 2.1986 13 6 8.9527 5.3653 3.2657 14 7 9.3878 4.0972 3.8647 15 6 10.7098 3.7404 3.8470 16 1 11.3545 4.0956 3.0567 17 6 11.2213 2.9223 4.8449 18 7 12.3350 2.2514 4.6396 19 14 10.3291 2.7732 6.4793 20 1 9.4266 1.5944 6.4448 21 1 11.3212 2.6053 7.5714 22 1 9.5301 4.0014 6.7208 23 6 8.3890 3.2158 4.4824 24 6 7.3164 2.8768 3.4402 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4026 -0.9314 30 1 3.7399 0.5066 1.0922 31 1 2.4772 1.2356 2.1130 32 1 4.8810 2.2256 2.8251 33 1 5.1888 4.3938 4.3623 34 1 5.5997 5.9583 3.4766 35 1 7.4464 6.0046 1.8576 36 1 8.3538 4.5543 1.3567 37 1 8.5263 6.0065 4.0372 38 1 9.8058 5.8633 2.8046 39 1 12.6922 1.6795 5.3368 40 1 8.8709 2.2991 4.8221 41 1 7.9276 3.7237 5.3293 42 1 7.7474 2.2429 2.6652 43 1 6.4893 2.3562 3.9229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266365499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:44 Heat of formation + Delta-G solvation = 1.009891 kcal Electronic energy + Delta-G solvation = -21641.535931 eV Core-core repulsion = 18494.368565 eV Total energy + Delta-G solvation = -3147.167366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18640 -39.89120 -37.35304 -36.23387 -34.56054 -33.55145 -32.06142 -31.54288 -30.17558 -26.07793 -25.67175 -24.53394 -23.18715 -22.36543 -21.30752 -20.64699 -19.92580 -18.53228 -18.01869 -17.34797 -16.96921 -16.77307 -15.93572 -15.73376 -15.41389 -15.34382 -15.24079 -14.60979 -14.40906 -14.26102 -14.18938 -13.64902 -13.50326 -13.45884 -13.08559 -12.97393 -12.61632 -12.38422 -12.26315 -12.10042 -12.00375 -11.89160 -11.60855 -11.49651 -11.29567 -11.01461 -10.77242 -10.60664 -10.20719 -9.66621 -8.85275 -8.15567 -5.47338 1.29849 1.40082 1.43077 1.52627 1.58302 2.15350 2.42714 2.92000 3.07989 3.36817 3.68621 3.74235 3.81925 3.93070 3.99698 4.02961 4.19223 4.35196 4.38494 4.47301 4.51854 4.61154 4.68401 4.71404 4.81255 4.87368 4.93839 4.94556 4.97233 4.99892 5.09483 5.13278 5.21805 5.22515 5.31242 5.51075 5.54535 5.77459 5.89165 5.91660 6.14249 6.53984 6.95153 7.24475 7.65269 8.05167 9.04653 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025972 B = 0.003565 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.812093 B = 7852.660653 C = 8360.806937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C -0.078 4.078 4 C -0.128 4.128 5 C 0.511 3.489 6 O -0.587 6.587 7 N -0.692 5.692 8 C 0.083 3.917 9 H 0.121 0.879 10 C -0.165 4.165 11 C -0.121 4.121 12 C -0.090 4.090 13 C 0.148 3.852 14 N -0.619 5.619 15 C -0.250 4.250 16 H 0.046 0.954 17 C -0.038 4.038 18 N -0.960 5.960 19 Si 0.951 3.049 20 H -0.271 1.271 21 H -0.314 1.314 22 H -0.259 1.259 23 C 0.126 3.874 24 C -0.087 4.087 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.123 0.877 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.413 0.587 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.261 0.739 40 H 0.048 0.952 41 H 0.038 0.962 42 H 0.052 0.948 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.666 -2.106 -3.605 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.178 4.178 3 C -0.116 4.116 4 C -0.168 4.168 5 C 0.300 3.700 6 O -0.467 6.467 7 N -0.342 5.342 8 C -0.023 4.023 9 H 0.139 0.861 10 C -0.203 4.203 11 C -0.123 4.123 12 C -0.129 4.129 13 C 0.023 3.977 14 N -0.344 5.344 15 C -0.379 4.379 16 H 0.064 0.936 17 C -0.233 4.233 18 N -0.606 5.606 19 Si 0.780 3.220 20 H -0.197 1.197 21 H -0.243 1.243 22 H -0.183 1.183 23 C 0.001 3.999 24 C -0.126 4.126 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.141 0.859 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.251 0.749 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.727 -1.610 -4.162 24.143 hybrid contribution 0.676 -0.427 0.958 1.248 sum -23.051 -2.036 -3.204 23.361 Atomic orbital electron populations 1.24045 0.96013 1.02501 1.00519 1.23001 0.96245 0.98107 1.00421 1.20443 0.97607 0.95835 0.97670 1.21662 0.99132 0.93934 1.02047 1.21374 0.79067 0.89605 0.79948 1.90673 1.67171 1.49982 1.38902 1.45434 1.39380 1.18693 1.30730 1.21659 0.94615 0.88352 0.97722 0.86111 1.23655 0.99757 1.00813 0.96084 1.21776 0.89262 0.98308 1.02941 1.21522 0.95213 0.98609 0.97514 1.21035 0.95872 0.86490 0.94300 1.44416 1.02622 1.18993 1.68351 1.18868 0.86172 1.27251 1.05657 0.93590 1.25969 0.97074 0.98809 1.01412 1.69981 1.25173 1.30726 1.34699 0.85822 0.77125 0.78889 0.80169 1.19712 1.24321 1.18341 1.21345 0.90254 0.93465 0.94861 1.21453 0.97946 0.95086 0.98149 0.87126 0.88764 0.85899 0.92076 0.91735 0.86578 0.86419 0.74910 0.87433 0.87070 0.89676 0.93352 0.94233 0.92928 0.92988 0.93385 0.94384 0.92918 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 14.32 67.78 0.97 -1.36 16 2 C -0.16 -2.05 9.52 25.65 0.24 -1.81 16 3 C -0.08 -1.27 4.95 29.85 0.15 -1.13 16 4 C -0.13 -1.81 5.68 29.85 0.17 -1.64 16 5 C 0.51 11.39 7.83 87.66 0.69 12.07 16 6 O -0.59 -18.19 15.55 -3.01 -0.05 -18.24 16 7 N -0.69 -14.16 5.35 -442.78 -2.37 -16.52 16 8 C 0.08 2.00 6.14 44.94 0.28 2.28 16 9 H 0.12 3.29 7.40 -2.39 -0.02 3.27 16 10 C -0.16 -3.60 9.86 30.55 0.30 -3.30 16 11 C -0.12 -3.33 1.94 -52.17 -0.10 -3.43 16 12 C -0.09 -2.76 5.83 30.77 0.18 -2.58 16 13 C 0.15 5.57 6.51 86.43 0.56 6.13 16 14 N -0.62 -28.59 2.71 -698.93 -1.89 -30.48 16 15 C -0.25 -14.18 10.00 84.03 0.84 -13.34 16 16 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 17 C -0.04 -2.23 5.23 84.86 0.44 -1.78 16 18 N -0.96 -60.44 13.97 21.65 0.30 -60.14 16 19 Si 0.95 45.79 24.40 68.60 1.67 47.46 16 20 H -0.27 -12.06 6.66 99.48 0.66 -11.40 16 21 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 22 H -0.26 -11.85 6.65 99.48 0.66 -11.19 16 23 C 0.13 5.02 4.23 86.43 0.37 5.39 16 24 C -0.09 -2.68 5.37 30.77 0.17 -2.52 16 25 H 0.11 1.01 8.06 -2.91 -0.02 0.99 16 26 H 0.09 1.15 7.84 -2.91 -0.02 1.13 16 27 H 0.12 1.24 8.06 -2.91 -0.02 1.22 16 28 H 0.06 1.14 7.75 -2.39 -0.02 1.13 16 29 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 30 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.41 6.47 7.12 -92.71 -0.66 5.81 16 33 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.11 2.21 8.14 -2.38 -0.02 2.20 16 35 H 0.08 2.14 8.10 -2.39 -0.02 2.13 16 36 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 2.06 7.92 -2.39 -0.02 2.04 16 39 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.05 2.15 4.31 -2.39 -0.01 2.14 16 41 H 0.04 1.44 7.27 -2.39 -0.02 1.43 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 1.97 6.75 -2.39 -0.02 1.96 16 Total: -1.00 -71.98 341.83 3.16 -68.82 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.23 Total: 16.12 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.25 Total: -7.01 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -3.96 Total: -107.15 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.05 Total: -18.24 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.67 Total: 47.46 kcal Total: -71.98 3.16 -68.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266365499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.832 kcal (2) G-P(sol) polarization free energy of solvation -71.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds