Wall clock time and date at job start Fri Apr 10 2020 17:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32989 * 120.00105 * 2 1 4 4 C 1.47102 * 120.00176 * 171.26331 * 3 2 1 5 5 O 1.21614 * 119.99999 * 5.24655 * 4 3 2 6 6 N 1.34779 * 120.00163 * 185.24465 * 4 3 2 7 7 C 1.46498 * 119.99774 * 179.72802 * 6 4 3 8 8 C 1.53007 * 109.46977 * 180.27634 * 7 6 4 9 9 N 1.46498 * 109.46977 * 179.97438 * 8 7 6 10 10 C 1.36939 * 119.99851 * 269.99589 * 9 8 7 11 11 H 1.07994 * 119.99938 * 147.11299 * 10 9 8 12 12 C 1.38813 * 119.99556 * 327.11055 * 10 9 8 13 13 N 1.31608 * 120.00628 * 337.03579 * 12 10 9 14 14 Si 1.86800 * 119.99525 * 157.03976 * 12 10 9 15 15 H 1.48503 * 109.47409 * 59.99914 * 14 12 10 16 16 H 1.48501 * 109.47148 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47111 * 299.99843 * 14 12 10 18 18 C 1.46500 * 120.00273 * 89.99914 * 9 8 7 19 19 C 1.53003 * 117.50217 * 182.85089 * 18 9 8 20 20 C 1.52998 * 117.49976 * 114.19097 * 18 9 8 21 21 C 1.50701 * 119.99927 * 180.02562 * 2 1 3 22 22 C 1.53000 * 117.50146 * 358.27323 * 21 2 1 23 23 C 1.53002 * 117.49607 * 289.61272 * 21 2 1 24 24 H 1.08999 * 109.47318 * 90.00106 * 1 2 3 25 25 H 1.08998 * 109.47039 * 209.99688 * 1 2 3 26 26 H 1.09001 * 109.47051 * 329.99590 * 1 2 3 27 27 H 1.07999 * 120.00333 * 351.26086 * 3 2 1 28 28 H 0.96999 * 119.99922 * 359.97438 * 6 4 3 29 29 H 1.09003 * 109.47399 * 300.27343 * 7 6 4 30 30 H 1.09001 * 109.47472 * 60.27454 * 7 6 4 31 31 H 1.09001 * 109.46449 * 299.99677 * 8 7 6 32 32 H 1.09001 * 109.47166 * 59.99632 * 8 7 6 33 33 H 0.97001 * 120.00515 * 175.02152 * 13 12 10 34 34 H 1.09000 * 115.55067 * 328.52059 * 18 9 8 35 35 H 1.09004 * 117.49212 * 0.02562 * 19 18 9 36 36 H 1.08995 * 117.49717 * 145.01548 * 19 18 9 37 37 H 1.08997 * 117.49860 * 214.98255 * 20 18 9 38 38 H 1.09008 * 117.49978 * 359.97438 * 20 18 9 39 39 H 1.09005 * 115.55208 * 143.94794 * 21 2 1 40 40 H 1.09007 * 117.49636 * 0.02562 * 22 21 2 41 41 H 1.08993 * 117.49959 * 145.02222 * 22 21 2 42 42 H 1.09000 * 117.49856 * 214.98226 * 23 21 2 43 43 H 1.09004 * 117.49715 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6302 1.1591 0.1935 5 8 4.2404 0.1091 0.2580 6 7 4.2900 2.3296 0.2993 7 6 5.7415 2.3368 0.4980 8 6 6.2362 3.7816 0.5919 9 7 7.6875 3.7888 0.7912 10 6 8.2046 3.7711 2.0591 11 1 9.1394 3.2666 2.2540 12 6 7.5272 4.4015 3.0937 13 7 6.6737 5.3678 2.8291 14 14 7.8271 3.8785 4.8617 15 1 9.2599 4.0739 5.1995 16 1 6.9883 4.7009 5.7703 17 1 7.4719 2.4455 5.0211 18 6 8.5857 3.8150 -0.3659 19 6 10.0901 3.7538 -0.0940 20 6 9.4491 5.0627 -0.5618 21 6 2.2605 -1.3051 -0.0006 22 6 1.4389 -2.5952 0.0397 23 6 2.2191 -2.1452 1.2775 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6414 2.0816 -0.1421 28 1 3.8034 3.1671 0.2475 29 1 5.9846 1.8088 1.4201 30 1 6.2258 1.8408 -0.3431 31 1 5.9930 4.3094 -0.3303 32 1 5.7518 4.2776 1.4330 33 1 6.1471 5.7591 3.5436 34 1 8.2152 3.3138 -1.2601 35 1 10.4115 3.6936 0.9458 36 1 10.7092 3.2127 -0.8095 37 1 9.6469 5.3823 -1.5850 38 1 9.3486 5.8644 0.1699 39 1 3.1841 -1.3145 -0.5794 40 1 0.3534 -2.5000 0.0663 41 1 1.8222 -3.4534 -0.5122 42 1 3.1154 -2.7076 1.5393 43 1 1.6473 -1.7537 2.1189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266583559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:58 Heat of formation + Delta-G solvation = 52.906123 kcal Electronic energy + Delta-G solvation = -21490.537464 eV Core-core repulsion = 18345.620488 eV Total energy + Delta-G solvation = -3144.916976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.55124 -37.67291 -37.04009 -34.64721 -33.38075 -33.15082 -30.78762 -28.60539 -27.15964 -24.51124 -23.26093 -22.31788 -21.76045 -21.29329 -20.42261 -19.76782 -18.49162 -16.99296 -16.14311 -15.87925 -15.47970 -15.05407 -14.67369 -14.56952 -14.16577 -13.91084 -13.55066 -13.17523 -12.86947 -12.65224 -12.55771 -12.32408 -11.91984 -11.60027 -11.55192 -11.30741 -11.03009 -10.75393 -10.71899 -10.71275 -10.37010 -10.29213 -10.09124 -9.83639 -9.65666 -9.33957 -9.15330 -8.88815 -8.51960 -8.34213 -6.67816 -5.84230 -3.43479 1.42732 3.34855 3.40956 3.44990 3.59125 3.74254 3.98575 4.43637 4.55111 4.80495 4.90329 5.01047 5.07480 5.12419 5.27820 5.31579 5.37151 5.40863 5.52698 5.56594 5.73236 5.88754 5.88958 6.03652 6.11521 6.14074 6.19699 6.26759 6.32455 6.39514 6.48069 6.55232 6.59637 6.65456 6.95124 6.99602 7.10257 7.19299 7.57777 7.75471 8.05737 8.39489 8.72567 9.08252 9.71960 10.25122 11.11219 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.004030 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.475469 B = 6946.898930 C = 7574.864293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.015 4.015 3 C -0.219 4.219 4 C 0.538 3.462 5 O -0.546 6.546 6 N -0.717 5.717 7 C 0.101 3.899 8 C 0.132 3.868 9 N -0.548 5.548 10 C -0.257 4.257 11 H 0.069 0.931 12 C 0.010 3.990 13 N -0.884 5.884 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.290 1.290 17 H -0.282 1.282 18 C 0.119 3.881 19 C -0.195 4.195 20 C -0.220 4.220 21 C -0.114 4.114 22 C -0.193 4.193 23 C -0.157 4.157 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.126 0.874 28 H 0.397 0.603 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.110 0.890 33 H 0.255 0.745 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 -8.054 -6.602 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.017 4.017 3 C -0.240 4.240 4 C 0.327 3.673 5 O -0.426 6.426 6 N -0.367 5.367 7 C -0.024 4.024 8 C 0.006 3.994 9 N -0.264 5.264 10 C -0.386 4.386 11 H 0.087 0.913 12 C -0.190 4.190 13 N -0.527 5.527 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.215 1.215 17 H -0.208 1.208 18 C 0.010 3.990 19 C -0.233 4.233 20 C -0.261 4.261 21 C -0.132 4.132 22 C -0.230 4.230 23 C -0.194 4.194 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.143 0.857 28 H 0.230 0.770 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.154 0.846 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.165 -8.617 -6.402 15.488 hybrid contribution -0.031 0.354 0.923 0.989 sum -11.195 -8.263 -5.479 14.954 Atomic orbital electron populations 1.20992 0.91418 1.03108 1.02779 1.21755 0.94969 0.93452 0.91566 1.22469 0.94122 0.98482 1.08898 1.18519 0.87589 0.83990 0.77250 1.90705 1.69636 1.31102 1.51186 1.46006 1.09883 1.07934 1.72865 1.22245 0.77254 1.02167 1.00721 1.21171 0.85171 0.91256 1.01846 1.43253 0.99593 1.82913 1.00682 1.19101 1.08355 1.27317 0.83834 0.91334 1.25038 1.00545 0.94872 0.98570 1.70016 1.27911 1.22394 1.32375 0.86466 0.77936 0.78424 0.84657 1.20614 1.21549 1.20794 1.21227 0.87890 0.98071 0.91790 1.23041 0.96880 1.01445 1.01971 1.23364 1.09274 0.93500 0.99993 1.21504 1.00671 0.87886 1.03119 1.23139 0.98503 0.98601 1.02723 1.22798 1.02292 1.02871 0.91470 0.90526 0.90944 0.91065 0.85653 0.76994 0.91738 0.93354 0.95132 0.87309 0.93482 0.89467 0.88423 0.90660 0.91153 0.89014 0.84550 0.88839 0.88828 0.88573 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 9.57 36.00 0.34 -0.71 16 2 C -0.02 -0.19 5.80 -101.17 -0.59 -0.77 16 3 C -0.22 -2.87 9.62 -37.81 -0.36 -3.24 16 4 C 0.54 9.22 7.73 -12.66 -0.10 9.12 16 5 O -0.55 -11.00 13.22 5.26 0.07 -10.93 16 6 N -0.72 -12.26 5.55 -61.49 -0.34 -12.60 16 7 C 0.10 2.08 6.00 -4.04 -0.02 2.06 16 8 C 0.13 2.94 5.45 -4.04 -0.02 2.92 16 9 N -0.55 -13.27 2.79 -165.66 -0.46 -13.73 16 10 C -0.26 -6.81 8.70 -15.06 -0.13 -6.94 16 11 H 0.07 1.83 6.47 -52.49 -0.34 1.49 16 12 C 0.01 0.26 4.96 -17.43 -0.09 0.17 16 13 N -0.88 -24.36 11.23 55.49 0.62 -23.74 16 14 Si 0.90 21.37 29.61 -169.99 -5.03 16.34 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 19 C -0.20 -3.85 9.80 -26.69 -0.26 -4.11 16 20 C -0.22 -4.44 10.37 -26.70 -0.28 -4.72 16 21 C -0.11 -1.50 4.33 -91.77 -0.40 -1.90 16 22 C -0.19 -1.97 9.82 -26.69 -0.26 -2.23 16 23 C -0.16 -1.92 10.24 -26.69 -0.27 -2.20 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.55 6.23 -51.93 -0.32 0.22 16 26 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 27 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 28 H 0.40 5.76 8.46 -40.82 -0.35 5.42 16 29 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.03 0.63 8.07 -51.93 -0.42 0.22 16 32 H 0.11 2.70 5.23 -51.93 -0.27 2.43 16 33 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 34 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 35 H 0.10 2.10 6.33 -51.93 -0.33 1.77 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 2.10 8.14 -51.92 -0.42 1.68 16 39 H 0.14 2.15 6.23 -51.93 -0.32 1.83 16 40 H 0.09 0.79 6.23 -51.93 -0.32 0.47 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -29.74 351.78 -9.61 -39.35 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.88 Total: 10.47 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -2.88 Total: -10.46 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.18 Total: -50.07 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.74 -9.61 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266583559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.252 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds