Wall clock time and date at job start Fri Apr 10 2020 17:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32996 * 120.00070 * 2 1 4 4 C 1.47104 * 119.99943 * 353.51271 * 3 2 1 5 5 O 1.21611 * 120.00098 * 353.31469 * 4 3 2 6 6 N 1.34776 * 120.00062 * 173.59800 * 4 3 2 7 7 C 1.46502 * 120.00262 * 179.72251 * 6 4 3 8 8 C 1.52996 * 109.46949 * 179.97438 * 7 6 4 9 9 N 1.46502 * 109.46949 * 179.97438 * 8 7 6 10 10 C 1.36937 * 120.00260 * 270.00335 * 9 8 7 11 11 H 1.08001 * 120.00563 * 144.43870 * 10 9 8 12 12 C 1.38821 * 119.99688 * 324.44186 * 10 9 8 13 13 N 1.31614 * 119.99674 * 338.42641 * 12 10 9 14 14 Si 1.86797 * 119.99955 * 158.42911 * 12 10 9 15 15 H 1.48496 * 109.47469 * 59.99586 * 14 12 10 16 16 H 1.48499 * 109.46910 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47109 * 299.99743 * 14 12 10 18 18 C 1.46498 * 120.00202 * 89.99793 * 9 8 7 19 19 C 1.52997 * 117.50304 * 183.79418 * 18 9 8 20 20 C 1.52998 * 117.49864 * 115.13356 * 18 9 8 21 21 C 1.50697 * 119.99910 * 180.02562 * 2 1 3 22 22 C 1.53001 * 117.49970 * 8.61589 * 21 2 1 23 23 C 1.53000 * 117.49545 * 299.99310 * 21 2 1 24 24 H 1.08993 * 109.47318 * 84.51108 * 1 2 3 25 25 H 1.08990 * 109.46881 * 204.51950 * 1 2 3 26 26 H 1.09004 * 109.46724 * 324.51827 * 1 2 3 27 27 H 1.08002 * 120.00246 * 173.50637 * 3 2 1 28 28 H 0.97008 * 119.99719 * 359.71913 * 6 4 3 29 29 H 1.08997 * 109.46752 * 300.00214 * 7 6 4 30 30 H 1.08999 * 109.46651 * 59.99985 * 7 6 4 31 31 H 1.08997 * 109.47770 * 299.99837 * 8 7 6 32 32 H 1.08999 * 109.47255 * 60.00602 * 8 7 6 33 33 H 0.97006 * 119.99729 * 185.03169 * 13 12 10 34 34 H 1.08999 * 115.55091 * 329.46816 * 18 9 8 35 35 H 1.08999 * 117.49516 * 359.97438 * 19 18 9 36 36 H 1.09000 * 117.50261 * 145.02309 * 19 18 9 37 37 H 1.09009 * 117.50236 * 214.98497 * 20 18 9 38 38 H 1.08999 * 117.49902 * 359.97438 * 20 18 9 39 39 H 1.09000 * 115.55016 * 154.32589 * 21 2 1 40 40 H 1.08994 * 117.49776 * 0.02562 * 22 21 2 41 41 H 1.08994 * 117.49579 * 145.02709 * 22 21 2 42 42 H 1.09007 * 117.49991 * 214.98201 * 23 21 2 43 43 H 1.08996 * 117.49997 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4436 2.4217 -0.1439 5 8 0.2515 2.4150 -0.3843 6 7 2.0984 3.5926 -0.0150 7 6 1.3742 4.8573 -0.1644 8 6 2.3430 6.0256 0.0285 9 7 1.6189 7.2903 -0.1215 10 6 1.5156 7.8782 -1.3539 11 1 0.6134 8.4053 -1.6270 12 6 2.5706 7.7965 -2.2525 13 7 3.7882 7.5510 -1.8172 14 14 2.2622 8.0352 -4.0793 15 1 1.6956 9.3878 -4.3131 16 1 3.5427 7.9007 -4.8192 17 1 1.3031 7.0073 -4.5578 18 6 1.0052 7.9260 1.0470 19 6 0.1879 9.1978 0.8116 20 6 1.5596 9.2829 1.4856 21 6 2.2605 -1.3051 -0.0006 22 6 1.4516 -2.5877 -0.2045 23 6 2.0261 -2.2566 1.1744 24 1 -0.3633 0.0983 -1.0229 25 1 -0.3633 -0.9349 0.4265 26 1 -0.3633 0.8369 0.5965 27 1 3.2468 1.1548 0.1058 28 1 3.0493 3.5979 0.1767 29 1 0.9355 4.9092 -1.1608 30 1 0.5838 4.9138 0.5840 31 1 2.7814 5.9735 1.0250 32 1 3.1337 5.9692 -0.7197 33 1 4.5363 7.5661 -2.4346 34 1 0.6640 7.2457 1.8273 35 1 0.1072 9.5617 -0.2127 36 1 -0.6908 9.3544 1.4372 37 1 1.5828 9.4954 2.5545 38 1 2.3812 9.7023 0.9051 39 1 3.2631 -1.2689 -0.4266 40 1 0.3746 -2.4875 -0.3386 41 1 1.9221 -3.3956 -0.7648 42 1 2.8745 -2.8467 1.5212 43 1 1.3273 -1.9384 1.9480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266583560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:01 Heat of formation + Delta-G solvation = 50.688771 kcal Electronic energy + Delta-G solvation = -21271.094649 eV Core-core repulsion = 18126.081521 eV Total energy + Delta-G solvation = -3145.013128 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.55514 -38.00545 -37.07479 -34.78341 -33.19903 -33.05563 -30.82496 -28.40157 -26.99310 -24.67116 -23.70852 -22.62239 -21.71149 -21.25475 -20.26176 -19.74398 -18.47922 -16.84016 -16.34987 -16.02340 -15.48048 -15.08059 -14.89528 -14.60178 -14.36938 -13.92078 -13.31028 -13.21594 -12.95265 -12.58007 -12.41673 -12.02917 -11.91452 -11.67049 -11.53830 -11.40285 -11.07579 -10.97809 -10.76846 -10.72659 -10.67072 -10.29774 -10.10447 -9.86153 -9.62855 -9.34492 -9.19887 -8.97335 -8.54731 -8.34352 -6.56394 -5.89467 -3.42964 1.42511 3.33367 3.39220 3.43198 3.48900 3.67193 3.76838 4.38460 4.47880 4.61062 4.69434 4.87179 4.92956 5.07234 5.24701 5.30835 5.34237 5.40075 5.54877 5.64155 5.80310 5.82097 5.90688 5.91432 6.03106 6.12268 6.14746 6.22784 6.31760 6.49787 6.52317 6.53611 6.59626 6.64774 6.94684 7.00537 7.10273 7.21980 7.55521 7.78504 8.03940 8.44205 8.69361 9.09242 9.72000 10.27409 11.12383 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020301 B = 0.003619 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.916345 B = 7734.740449 C = 8475.883365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.012 4.012 3 C -0.219 4.219 4 C 0.538 3.462 5 O -0.549 6.549 6 N -0.717 5.717 7 C 0.100 3.900 8 C 0.137 3.863 9 N -0.548 5.548 10 C -0.263 4.263 11 H 0.067 0.933 12 C 0.014 3.986 13 N -0.889 5.889 14 Si 0.901 3.099 15 H -0.280 1.280 16 H -0.289 1.289 17 H -0.280 1.280 18 C 0.120 3.880 19 C -0.196 4.196 20 C -0.220 4.220 21 C -0.130 4.130 22 C -0.173 4.173 23 C -0.168 4.168 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.397 0.603 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.107 0.893 33 H 0.258 0.742 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 -15.493 5.832 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.014 4.014 3 C -0.240 4.240 4 C 0.326 3.674 5 O -0.430 6.430 6 N -0.366 5.366 7 C -0.025 4.025 8 C 0.010 3.990 9 N -0.264 5.264 10 C -0.392 4.392 11 H 0.085 0.915 12 C -0.186 4.186 13 N -0.531 5.531 14 Si 0.730 3.270 15 H -0.206 1.206 16 H -0.215 1.215 17 H -0.206 1.206 18 C 0.011 3.989 19 C -0.234 4.234 20 C -0.261 4.261 21 C -0.148 4.148 22 C -0.210 4.210 23 C -0.205 4.205 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.142 0.858 28 H 0.231 0.769 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.636 -15.529 5.529 16.565 hybrid contribution 0.582 0.337 -0.881 1.108 sum -1.054 -15.192 4.648 15.922 Atomic orbital electron populations 1.21142 0.90889 1.02108 1.03730 1.21707 0.96096 0.92191 0.91431 1.22401 1.00231 0.92208 1.09156 1.18484 0.87036 0.84300 0.77549 1.90729 1.15237 1.87725 1.49268 1.45999 1.12875 1.06266 1.71480 1.22284 0.96512 0.82343 1.01390 1.21122 0.94641 0.82559 1.00706 1.43221 1.61473 1.18928 1.02828 1.19031 0.98351 1.32581 0.89255 0.91531 1.25181 0.94647 0.99732 0.99028 1.69852 0.97845 1.51233 1.34204 0.86396 0.77164 0.78467 0.85002 1.20619 1.21521 1.20648 1.21215 0.99064 0.86788 0.91829 1.23039 0.93615 1.04932 1.01812 1.23354 0.97198 1.07416 0.98141 1.21270 1.00137 0.88858 1.04556 1.23058 1.00532 0.97783 0.99645 1.22975 1.03651 1.02131 0.91730 0.90352 0.93027 0.88989 0.85789 0.76924 0.91709 0.93302 0.95089 0.87582 0.93216 0.89515 0.88436 0.90719 0.91215 0.88989 0.86701 0.88011 0.88403 0.88340 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 7.91 36.01 0.28 -1.27 16 2 C -0.01 -0.15 5.81 -101.17 -0.59 -0.74 16 3 C -0.22 -2.92 9.67 -37.80 -0.37 -3.29 16 4 C 0.54 9.24 7.61 -12.66 -0.10 9.14 16 5 O -0.55 -11.09 13.28 5.27 0.07 -11.02 16 6 N -0.72 -12.28 5.55 -61.49 -0.34 -12.62 16 7 C 0.10 2.05 6.00 -4.04 -0.02 2.03 16 8 C 0.14 3.04 5.45 -4.04 -0.02 3.02 16 9 N -0.55 -13.31 2.78 -165.67 -0.46 -13.77 16 10 C -0.26 -6.97 8.62 -15.06 -0.13 -7.10 16 11 H 0.07 1.78 6.55 -52.49 -0.34 1.44 16 12 C 0.01 0.39 4.97 -17.43 -0.09 0.30 16 13 N -0.89 -24.51 11.33 55.49 0.63 -23.88 16 14 Si 0.90 21.36 29.61 -169.99 -5.03 16.33 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.12 2.57 6.56 -67.93 -0.45 2.12 16 19 C -0.20 -3.88 9.80 -26.70 -0.26 -4.14 16 20 C -0.22 -4.47 10.35 -26.70 -0.28 -4.75 16 21 C -0.13 -1.21 6.01 -91.77 -0.55 -1.76 16 22 C -0.17 -1.36 9.76 -26.73 -0.26 -1.62 16 23 C -0.17 -1.30 10.10 -26.73 -0.27 -1.57 16 24 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 25 H 0.05 0.52 6.30 -51.93 -0.33 0.19 16 26 H 0.09 1.38 6.10 -51.93 -0.32 1.07 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.40 5.80 8.46 -40.82 -0.35 5.45 16 29 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.64 8.07 -51.93 -0.42 0.23 16 32 H 0.11 2.64 5.37 -51.93 -0.28 2.36 16 33 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 34 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 35 H 0.10 2.10 6.37 -51.93 -0.33 1.77 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 39 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 0.80 6.42 -51.93 -0.33 0.47 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -29.68 351.99 -9.82 -39.50 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.90 Total: 9.78 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -3.09 Total: -9.62 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.17 Total: -50.27 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.68 -9.82 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266583560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.189 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds