Wall clock time and date at job start Fri Apr 10 2020 17:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47114 * 120.00608 * 2 1 4 4 C 1.50707 * 119.99436 * 5.49379 * 3 2 1 5 5 C 1.32860 * 120.00273 * 185.49446 * 3 2 1 6 6 C 1.50694 * 120.00213 * 6.25291 * 5 3 2 7 7 C 1.50699 * 109.47576 * 126.12338 * 6 5 3 8 8 O 1.21284 * 119.99927 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00385 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00247 * 179.72494 * 9 7 6 11 11 H 1.08999 * 109.47257 * 35.27503 * 10 9 7 12 12 C 1.53008 * 109.47233 * 155.27198 * 10 9 7 13 13 N 1.46496 * 109.46877 * 304.99967 * 12 10 9 14 14 C 1.36946 * 119.99648 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99572 * 0.02562 * 14 13 12 16 16 C 1.38808 * 119.99927 * 180.02562 * 14 13 12 17 17 N 1.31616 * 119.99979 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99848 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47198 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47042 * 119.99979 * 18 16 14 21 21 H 1.48502 * 109.46898 * 239.99532 * 18 16 14 22 22 C 1.52998 * 109.47105 * 275.27325 * 10 9 7 23 23 C 1.52995 * 117.50059 * 128.74643 * 22 10 9 24 24 C 1.53003 * 117.49926 * 60.08356 * 22 10 9 25 25 H 1.08000 * 119.99569 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99910 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.99739 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47037 * 269.99736 * 4 3 2 29 29 H 1.09003 * 109.47069 * 30.00497 * 4 3 2 30 30 H 1.08998 * 109.46716 * 150.00199 * 4 3 2 31 31 H 1.08006 * 120.00058 * 186.25215 * 5 3 2 32 32 H 1.09000 * 109.47201 * 6.12026 * 6 5 3 33 33 H 1.09001 * 109.47329 * 246.12313 * 6 5 3 34 34 H 0.97003 * 119.99990 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.46597 * 65.00319 * 12 10 9 36 36 H 1.08999 * 109.46860 * 184.99891 * 12 10 9 37 37 H 0.96993 * 120.00483 * 359.97438 * 13 12 10 38 38 H 0.97000 * 119.99914 * 179.97438 * 17 16 14 39 39 H 1.09004 * 115.55039 * 274.41846 * 22 10 9 40 40 H 1.09004 * 117.49719 * 359.97438 * 23 22 10 41 41 H 1.08997 * 117.50034 * 145.02464 * 23 22 10 42 42 H 1.08992 * 117.49961 * 214.98284 * 24 22 10 43 43 H 1.09000 * 117.49508 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 1.3161 2.5761 0.1250 5 6 3.3885 1.2765 -0.1102 6 6 4.1250 -0.0110 -0.3762 7 6 5.0037 0.1543 -1.5893 8 8 5.0297 1.2135 -2.1795 9 7 5.7606 -0.8749 -2.0185 10 6 6.6102 -0.7161 -3.2013 11 1 7.0040 0.2998 -3.2321 12 6 7.7707 -1.7110 -3.1330 13 7 8.4903 -1.5357 -1.8691 14 6 9.5745 -2.3222 -1.5838 15 1 9.8991 -3.0714 -2.2907 16 6 10.2561 -2.1566 -0.3859 17 7 9.8607 -1.2433 0.4753 18 14 11.7353 -3.2290 0.0029 19 1 11.9732 -4.1705 -1.1204 20 1 12.9326 -2.3710 0.1924 21 1 11.4758 -3.9982 1.2464 22 6 5.7845 -0.9815 -4.4617 23 6 5.8303 0.0713 -5.5709 24 6 4.5715 -0.0835 -4.7137 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8687 -0.9354 0.0004 28 1 1.0506 2.9393 -0.8678 29 1 0.4093 2.4195 0.7092 30 1 1.9473 3.3114 0.6239 31 1 3.9370 2.2014 -0.0090 32 1 3.4060 -0.8106 -0.5546 33 1 4.7411 -0.2623 0.4871 34 1 5.7401 -1.7220 -1.5463 35 1 7.3817 -2.7275 -3.1918 36 1 8.4509 -1.5335 -3.9661 37 1 8.1990 -0.8627 -1.2344 38 1 10.3368 -1.1278 1.3125 39 1 5.7082 -2.0264 -4.7624 40 1 6.4484 0.9532 -5.4026 41 1 5.7837 -0.2810 -6.6014 42 1 3.6975 -0.5376 -5.1805 43 1 4.3617 0.6960 -3.9813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269104427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:05 Heat of formation + Delta-G solvation = 9.045061 kcal Electronic energy + Delta-G solvation = -21542.494523 eV Core-core repulsion = 18395.675589 eV Total energy + Delta-G solvation = -3146.818935 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08429 -38.68843 -37.60782 -36.61674 -34.94019 -33.19895 -32.66904 -30.91498 -29.53682 -26.53493 -25.71414 -23.33964 -23.07414 -22.76189 -21.72294 -21.23835 -19.26838 -18.48472 -18.00639 -17.30513 -16.89678 -16.65272 -16.33514 -15.74840 -15.59218 -15.19740 -15.08725 -14.52115 -14.44873 -14.21085 -13.75151 -13.42551 -13.20801 -13.18227 -12.99983 -12.82574 -12.68838 -12.51401 -12.35639 -12.25368 -12.03719 -11.84796 -11.52672 -11.29573 -11.24788 -11.09386 -10.99712 -10.69714 -9.89648 -9.10843 -9.01673 -7.94659 -5.24376 0.46257 1.48610 1.49443 1.59319 1.72301 2.05759 2.37213 2.56182 3.04969 3.40000 3.58580 3.76496 3.91963 3.97821 4.03329 4.12974 4.15962 4.22620 4.37206 4.45440 4.47797 4.60354 4.64325 4.69615 4.81345 4.81825 4.82439 4.91380 4.95422 5.04503 5.12521 5.15744 5.29164 5.39043 5.50609 5.51863 5.59715 5.63365 5.84357 6.06153 6.26194 6.66586 7.33655 7.35547 8.06339 8.30846 9.28610 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.004233 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.993201 B = 6612.552048 C = 7859.643257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.148 4.148 3 C -0.108 4.108 4 C -0.116 4.116 5 C -0.138 4.138 6 C -0.111 4.111 7 C 0.516 3.484 8 O -0.577 6.577 9 N -0.706 5.706 10 C 0.178 3.822 11 H 0.055 0.945 12 C 0.151 3.849 13 N -0.743 5.743 14 C -0.244 4.244 15 H 0.079 0.921 16 C -0.072 4.072 17 N -0.968 5.968 18 Si 0.973 3.027 19 H -0.265 1.265 20 H -0.298 1.298 21 H -0.292 1.292 22 C -0.164 4.164 23 C -0.166 4.166 24 C -0.181 4.181 25 H 0.108 0.892 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.409 0.591 35 H 0.041 0.959 36 H 0.034 0.966 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.116 0.739 -4.672 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.108 4.108 4 C -0.172 4.172 5 C -0.157 4.157 6 C -0.150 4.150 7 C 0.305 3.695 8 O -0.457 6.457 9 N -0.356 5.356 10 C 0.073 3.927 11 H 0.073 0.927 12 C 0.024 3.976 13 N -0.386 5.386 14 C -0.375 4.375 15 H 0.097 0.903 16 C -0.265 4.265 17 N -0.619 5.619 18 Si 0.802 3.198 19 H -0.189 1.189 20 H -0.225 1.225 21 H -0.219 1.219 22 C -0.183 4.183 23 C -0.204 4.204 24 C -0.218 4.218 25 H 0.126 0.874 26 H 0.135 0.865 27 H 0.141 0.859 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.126 0.874 34 H 0.244 0.756 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.956 1.333 -5.142 19.687 hybrid contribution 1.220 -0.381 0.871 1.546 sum -17.737 0.953 -4.271 18.269 Atomic orbital electron populations 1.24657 0.95237 1.03173 0.97538 1.22081 0.96043 0.96083 1.02342 1.20814 0.93498 0.95619 1.00854 1.20829 1.00431 0.93512 1.02441 1.22721 0.94607 0.97390 1.00958 1.20807 0.98993 0.99171 0.96056 1.20959 0.79806 0.83168 0.85584 1.90579 1.67596 1.28330 1.59218 1.45944 1.43760 1.15863 1.30044 1.20515 0.89226 0.98807 0.84137 0.92708 1.21027 0.91379 0.96546 0.88642 1.42522 1.33906 1.43431 1.18734 1.19669 1.04673 1.12184 1.01017 0.90327 1.25539 1.02716 1.00911 0.97313 1.69832 1.43793 1.37791 1.10448 0.85084 0.78972 0.77986 0.77750 1.18918 1.22501 1.21940 1.22569 1.01710 0.97683 0.96357 1.22977 1.01000 0.99962 0.96443 1.23193 0.92126 1.02927 1.03574 0.87381 0.86518 0.85917 0.91163 0.90237 0.91726 0.88014 0.85925 0.87447 0.75552 0.94082 0.94792 0.79344 0.94094 0.86071 0.90220 0.86612 0.87872 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 14.07 66.64 0.94 -1.55 16 2 C -0.15 -2.75 9.20 23.43 0.22 -2.54 16 3 C -0.11 -2.38 5.98 -18.71 -0.11 -2.49 16 4 C -0.12 -2.09 9.38 71.24 0.67 -1.42 16 5 C -0.14 -3.62 8.43 24.51 0.21 -3.42 16 6 C -0.11 -2.84 5.92 29.10 0.17 -2.67 16 7 C 0.52 16.84 7.15 87.66 0.63 17.47 16 8 O -0.58 -22.44 13.05 -3.04 -0.04 -22.48 16 9 N -0.71 -22.49 4.50 -442.53 -1.99 -24.48 16 10 C 0.18 6.08 2.43 44.99 0.11 6.19 16 11 H 0.05 2.23 7.34 -2.39 -0.02 2.21 16 12 C 0.15 5.80 5.80 86.38 0.50 6.30 16 13 N -0.74 -36.75 5.43 -343.44 -1.87 -38.62 16 14 C -0.24 -13.27 9.99 84.03 0.84 -12.43 16 15 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 16 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 17 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 18 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 20 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 C -0.16 -4.51 5.36 -10.79 -0.06 -4.57 16 23 C -0.17 -4.29 10.18 30.62 0.31 -3.98 16 24 C -0.18 -4.91 9.73 30.62 0.30 -4.61 16 25 H 0.11 1.39 6.31 -2.91 -0.02 1.37 16 26 H 0.12 1.31 8.06 -2.91 -0.02 1.28 16 27 H 0.12 2.08 6.00 -2.91 -0.02 2.06 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.14 6.67 -2.39 -0.02 1.12 16 30 H 0.06 1.17 8.06 -2.39 -0.02 1.15 16 31 H 0.10 2.96 8.04 -2.91 -0.02 2.94 16 32 H 0.12 2.48 5.41 -2.39 -0.01 2.47 16 33 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.41 12.08 8.60 -92.71 -0.80 11.29 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.37 20.10 7.33 -92.71 -0.68 19.42 16 38 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 39 H 0.12 2.92 8.11 -2.38 -0.02 2.90 16 40 H 0.08 2.28 8.05 -2.39 -0.02 2.26 16 41 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.09 3.09 5.00 -2.39 -0.01 3.08 16 Total: -1.00 -67.14 354.02 3.13 -64.00 By element: Atomic # 1 Polarization: 46.25 SS G_CDS: -0.47 Total: 45.79 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 5.18 Total: -13.33 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -3.58 Total: -121.49 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.04 Total: -22.48 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -67.14 3.13 -64.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269104427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.050 kcal (2) G-P(sol) polarization free energy of solvation -67.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds