Wall clock time and date at job start Fri Apr 10 2020 17:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 119.99770 * 2 1 4 4 O 1.21281 * 119.99944 * 186.48807 * 3 2 1 5 5 C 1.50701 * 120.00199 * 6.47697 * 3 2 1 6 6 C 1.53006 * 115.54990 * 176.11701 * 5 3 2 7 7 C 1.53001 * 117.49653 * 34.33457 * 6 5 3 8 8 C 1.52997 * 117.49825 * 325.67455 * 6 5 3 9 9 C 1.53001 * 117.49833 * 30.45222 * 5 3 2 10 10 C 1.52997 * 117.50156 * 321.79038 * 5 3 2 11 11 C 1.46496 * 120.00190 * 179.97438 * 2 1 3 12 12 C 1.53786 * 113.61336 * 42.49439 * 11 2 1 13 13 C 1.53780 * 87.08212 * 220.02004 * 12 11 2 14 14 N 1.46496 * 113.69509 * 139.98963 * 13 12 11 15 15 C 1.36937 * 119.99764 * 107.46084 * 14 13 12 16 16 H 1.07997 * 120.00078 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99654 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00573 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99635 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47322 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46706 * 120.00110 * 19 17 15 22 22 H 1.48498 * 109.47324 * 239.99927 * 19 17 15 23 23 C 1.53782 * 87.08107 * 25.43293 * 13 12 11 24 24 H 1.08994 * 109.47751 * 235.30744 * 1 2 3 25 25 H 1.09002 * 109.46797 * 115.30557 * 1 2 3 26 26 H 1.08997 * 109.47477 * 355.31513 * 1 2 3 27 27 H 1.08998 * 115.54991 * 180.02562 * 6 5 3 28 28 H 1.08998 * 117.50054 * 359.97438 * 7 6 5 29 29 H 1.08998 * 117.49653 * 145.02392 * 7 6 5 30 30 H 1.08998 * 117.49705 * 214.98316 * 8 6 5 31 31 H 1.08999 * 117.49791 * 359.97438 * 8 6 5 32 32 H 1.09004 * 117.49789 * 359.97438 * 9 5 3 33 33 H 1.08997 * 117.49883 * 145.01662 * 9 5 3 34 34 H 1.09002 * 117.50192 * 214.97888 * 10 5 3 35 35 H 1.08999 * 117.49760 * 359.97438 * 10 5 3 36 36 H 1.08998 * 112.85108 * 173.80140 * 11 2 1 37 37 H 1.08997 * 113.61577 * 334.56617 * 12 11 2 38 38 H 1.08991 * 113.61412 * 105.47039 * 12 11 2 39 39 H 1.08998 * 113.61433 * 270.88589 * 13 12 11 40 40 H 0.97000 * 120.00193 * 287.46968 * 14 13 12 41 41 H 0.96996 * 120.00561 * 180.02562 * 18 17 15 42 42 H 1.09007 * 113.61628 * 220.02236 * 23 13 12 43 43 H 1.08998 * 113.69160 * 89.13261 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3458 1.1706 -0.1187 5 6 1.3925 2.4681 0.1472 6 6 2.2638 3.7234 0.2269 7 6 3.5564 3.7392 -0.5916 8 6 3.6162 3.6010 0.9318 9 6 0.0999 2.4524 0.9657 10 6 0.0401 2.5905 -0.5577 11 6 2.1975 -1.2687 0.0006 12 6 1.6058 -2.3221 -0.9508 13 6 1.8978 -3.3612 0.1445 14 7 0.8414 -4.3638 0.3016 15 6 1.0469 -5.6479 -0.1275 16 1 1.9879 -5.9215 -0.5814 17 6 0.0456 -6.5978 0.0208 18 7 -1.1014 -6.2643 0.5735 19 14 0.3262 -8.3497 -0.5639 20 1 1.6882 -8.4657 -1.1441 21 1 0.1970 -9.2816 0.5850 22 1 -0.6833 -8.6945 -1.5969 23 6 1.8056 -2.2058 1.1552 24 1 -0.3634 -0.5849 0.8449 25 1 -0.3633 -0.4393 -0.9291 26 1 -0.3634 1.0242 0.0839 27 1 1.7240 4.6643 0.3338 28 1 3.7863 2.8552 -1.1864 29 1 3.8672 4.6906 -1.0231 30 1 3.9663 4.4616 1.5018 31 1 3.8850 2.6264 1.3391 32 1 -0.2109 1.5009 1.3973 33 1 -0.1300 3.3363 1.5605 34 1 -0.2291 3.5653 -0.9644 35 1 -0.3097 1.7302 -1.1283 36 1 3.2739 -1.1360 -0.1079 37 1 0.5429 -2.1836 -1.1489 38 1 2.1910 -2.4684 -1.8586 39 1 2.8924 -3.8016 0.0745 40 1 -0.0037 -4.1182 0.7095 41 1 -1.8009 -6.9282 0.6775 42 1 2.5523 -2.2581 1.9476 43 1 0.7980 -2.0345 1.5339 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998952332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:34 Heat of formation + Delta-G solvation = 88.173984 kcal Electronic energy + Delta-G solvation = -22190.820984 eV Core-core repulsion = 19047.433337 eV Total energy + Delta-G solvation = -3143.387647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.22195 -39.99417 -38.23147 -37.36367 -35.66325 -34.22494 -31.86159 -28.49929 -26.82988 -26.54745 -25.40673 -24.27626 -23.68964 -22.93063 -22.23693 -20.38066 -20.11566 -19.06955 -17.98033 -17.17015 -16.77373 -16.47781 -16.29541 -16.02022 -15.83400 -15.00924 -14.95674 -14.73703 -14.53012 -14.17906 -13.60035 -13.30802 -13.23073 -13.15372 -12.84659 -12.47316 -12.30920 -12.22087 -12.18597 -12.12022 -12.08430 -11.94638 -11.71669 -11.56312 -11.43860 -10.91270 -10.87295 -10.46222 -10.38453 -9.55984 -9.01436 -7.96818 -5.25270 1.41716 1.47386 1.47668 1.57747 1.96804 2.55542 2.64249 3.22068 3.34838 3.36880 3.45399 3.66608 3.77160 3.86305 3.90839 3.93532 4.12177 4.21505 4.24638 4.27675 4.35830 4.40443 4.46971 4.69710 4.72335 4.75644 4.82879 4.86922 4.88228 4.89314 5.00661 5.08255 5.09962 5.11815 5.12060 5.32956 5.42501 5.45907 5.50816 5.64093 6.25367 6.46019 7.16328 7.32104 8.06097 8.30900 9.26449 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039130 B = 0.003486 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.384767 B = 8029.772430 C = 8420.847066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.595 5.595 3 C 0.537 3.463 4 O -0.570 6.570 5 C -0.148 4.148 6 C -0.101 4.101 7 C -0.178 4.178 8 C -0.177 4.177 9 C -0.159 4.159 10 C -0.157 4.157 11 C 0.131 3.869 12 C -0.162 4.162 13 C 0.154 3.846 14 N -0.722 5.722 15 C -0.246 4.246 16 H 0.075 0.925 17 C -0.072 4.072 18 N -0.967 5.967 19 Si 0.971 3.029 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.148 4.148 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.163 0.837 27 H 0.139 0.861 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.375 0.625 41 H 0.252 0.748 42 H 0.069 0.931 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 23.084 -0.334 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.325 5.325 3 C 0.328 3.672 4 O -0.450 6.450 5 C -0.151 4.151 6 C -0.119 4.119 7 C -0.214 4.214 8 C -0.214 4.214 9 C -0.195 4.195 10 C -0.193 4.193 11 C 0.027 3.973 12 C -0.204 4.204 13 C 0.043 3.957 14 N -0.360 5.360 15 C -0.378 4.378 16 H 0.093 0.907 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.800 3.200 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.188 4.188 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.180 0.820 27 H 0.157 0.843 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.208 0.792 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.327 22.887 -0.468 23.010 hybrid contribution -0.083 -1.501 -0.153 1.511 sum 2.244 21.386 -0.621 21.512 Atomic orbital electron populations 1.23825 0.78715 1.08979 1.02499 1.47734 1.07764 1.04860 1.72121 1.20198 0.87155 0.84869 0.75019 1.90603 1.15750 1.87310 1.51371 1.20969 0.90575 0.92124 1.11405 1.21528 0.88697 0.95931 1.05723 1.23025 1.01244 1.02705 0.94466 1.22944 1.00457 1.02516 0.95488 1.23795 0.95188 1.06140 0.94360 1.23774 0.94136 1.06190 0.95239 1.22223 0.96930 0.81188 0.96991 1.24057 1.01112 0.96598 0.98605 1.21600 0.92401 0.87228 0.94463 1.42476 1.14933 1.06708 1.71837 1.19724 0.99272 0.87526 1.31256 0.90676 1.25529 0.96253 1.02140 1.02552 1.69800 1.06019 1.34674 1.51278 0.85109 0.77561 0.80201 0.77102 1.19212 1.22037 1.21983 1.23731 1.02021 0.95606 0.97393 0.91943 0.92294 0.82048 0.84328 0.90163 0.87768 0.87652 0.90738 0.86149 0.85136 0.85055 0.86159 0.87685 0.90313 0.92255 0.90595 0.79206 0.93938 0.91265 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 6.74 127.77 0.86 0.86 16 2 N -0.59 -16.07 3.09 -819.66 -2.53 -18.60 16 3 C 0.54 14.94 7.18 87.66 0.63 15.57 16 4 O -0.57 -19.57 11.32 -3.03 -0.03 -19.61 16 5 C -0.15 -2.84 2.46 -52.93 -0.13 -2.97 16 6 C -0.10 -1.83 5.84 -10.79 -0.06 -1.89 16 7 C -0.18 -3.89 9.66 30.62 0.30 -3.59 16 8 C -0.18 -3.88 9.67 30.62 0.30 -3.58 16 9 C -0.16 -2.01 9.03 30.62 0.28 -1.73 16 10 C -0.16 -1.96 9.03 30.62 0.28 -1.69 16 11 C 0.13 4.13 4.24 45.52 0.19 4.32 16 12 C -0.16 -5.66 7.39 31.12 0.23 -5.43 16 13 C 0.15 6.11 4.48 45.52 0.20 6.32 16 14 N -0.72 -36.08 5.40 -320.46 -1.73 -37.81 16 15 C -0.25 -13.61 9.97 84.03 0.84 -12.77 16 16 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 17 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 18 N -0.97 -58.32 13.06 21.65 0.28 -58.04 16 19 Si 0.97 45.90 29.55 68.60 2.03 47.93 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 C -0.15 -4.93 7.43 31.12 0.23 -4.70 16 24 H 0.06 1.39 6.77 -2.39 -0.02 1.37 16 25 H 0.06 1.30 7.03 -2.39 -0.02 1.29 16 26 H 0.16 2.43 1.50 -21.85 -0.03 2.39 16 27 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 2.29 6.15 -2.39 -0.01 2.28 16 29 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 2.11 6.41 -2.39 -0.02 2.10 16 32 H 0.12 1.62 5.52 -2.39 -0.01 1.61 16 33 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.12 1.56 5.61 -2.39 -0.01 1.55 16 36 H 0.11 3.54 7.18 -2.39 -0.02 3.52 16 37 H 0.08 2.82 6.44 -2.39 -0.02 2.81 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 3.04 8.10 -2.39 -0.02 3.02 16 40 H 0.38 19.88 7.93 -92.71 -0.73 19.15 16 41 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.08 2.76 6.64 -2.39 -0.02 2.74 16 Total: -1.00 -68.10 330.78 2.88 -65.21 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: 0.27 Total: 35.85 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 4.60 Total: -14.93 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -3.98 Total: -114.45 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.03 Total: -19.61 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -68.10 2.88 -65.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998952332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.385 kcal (2) G-P(sol) polarization free energy of solvation -68.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds