Wall clock time and date at job start Fri Apr 10 2020 17:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 119.99713 * 2 1 4 4 O 1.21287 * 119.99837 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00204 * 0.02562 * 3 2 1 6 6 H 1.08994 * 115.55647 * 325.64967 * 5 3 2 7 7 C 1.53123 * 117.51277 * 111.39047 * 5 3 2 8 8 C 1.52455 * 59.85949 * 107.44528 * 7 5 3 9 9 C 1.53252 * 128.58465 * 117.59574 * 8 7 5 10 10 C 1.53886 * 86.88266 * 114.94826 * 9 8 7 11 11 C 1.53257 * 128.58619 * 242.39898 * 8 7 5 12 12 C 1.46500 * 119.99802 * 180.02562 * 2 1 3 13 13 C 1.53782 * 113.61579 * 60.00311 * 12 2 1 14 14 C 1.53785 * 87.07992 * 220.01650 * 13 12 2 15 15 N 1.46499 * 113.61784 * 139.97831 * 14 13 12 16 16 C 1.36935 * 119.99938 * 155.00053 * 15 14 13 17 17 H 1.07999 * 120.00083 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99632 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99535 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00187 * 0.27829 * 18 16 15 21 21 H 1.48501 * 109.46922 * 269.71949 * 20 18 16 22 22 H 1.48496 * 109.47354 * 29.72145 * 20 18 16 23 23 H 1.48501 * 109.47428 * 149.72253 * 20 18 16 24 24 C 1.53775 * 113.61818 * 322.49842 * 12 2 1 25 25 H 1.09006 * 109.46953 * 269.99221 * 1 2 3 26 26 H 1.08998 * 109.47805 * 29.99300 * 1 2 3 27 27 H 1.08998 * 109.46989 * 149.99544 * 1 2 3 28 28 H 1.09007 * 117.51021 * 214.89855 * 7 5 3 29 29 H 1.09003 * 117.51447 * 359.94874 * 7 5 3 30 30 H 1.09000 * 113.64894 * 229.44388 * 9 8 7 31 31 H 1.09004 * 113.64828 * 0.44928 * 9 8 7 32 32 H 1.09005 * 113.58870 * 270.39130 * 10 9 8 33 33 H 1.09001 * 113.66534 * 139.58363 * 10 9 8 34 34 H 1.09003 * 113.64418 * 359.55138 * 11 8 7 35 35 H 1.08992 * 113.64917 * 130.46493 * 11 8 7 36 36 H 1.08998 * 112.90129 * 191.24747 * 12 2 1 37 37 H 1.08998 * 113.62121 * 105.46497 * 13 12 2 38 38 H 1.09004 * 113.68895 * 334.56949 * 13 12 2 39 39 H 1.08995 * 113.60964 * 270.79977 * 14 13 12 40 40 H 0.97004 * 119.99469 * 335.00121 * 15 14 13 41 41 H 0.97005 * 119.99717 * 180.02562 * 19 18 16 42 42 H 1.09002 * 113.60943 * 25.43449 * 24 12 2 43 43 H 1.08997 * 113.61869 * 254.53539 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.4469 2.4737 -0.5539 7 6 1.4610 3.3323 1.2653 8 6 2.2042 3.7584 0.0041 9 6 2.0052 5.0204 -0.8421 10 6 3.4265 5.4286 -0.4161 11 6 3.7127 3.9315 -0.2039 12 6 2.1975 -1.2688 -0.0006 13 6 1.8954 -2.1539 -1.2213 14 6 1.9129 -3.3524 -0.2578 15 7 0.8717 -4.3446 -0.5363 16 6 1.0456 -5.6466 -0.1494 17 1 1.9501 -5.9420 0.3614 18 6 0.0587 -6.5866 -0.4128 19 7 0.2261 -7.8382 -0.0413 20 14 -1.5031 -6.0770 -1.3019 21 1 -2.5240 -5.6579 -0.3082 22 1 -1.2060 -4.9439 -2.2144 23 1 -2.0211 -7.2243 -2.0897 24 6 1.5375 -2.3615 0.8567 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5139 28 1 0.5725 3.8998 1.5422 29 1 2.0552 2.9535 2.0969 30 1 1.9092 4.8206 -1.9094 31 1 1.2276 5.6833 -0.4625 32 1 3.4552 6.0129 0.5037 33 1 4.0127 5.8752 -1.2192 34 1 4.3039 3.7214 0.6874 35 1 4.0922 3.4273 -1.0926 36 1 3.2624 -1.1438 0.1953 37 1 2.6997 -2.1730 -1.9566 38 1 0.9185 -1.9665 -1.6672 39 1 2.8998 -3.7981 -0.1333 40 1 0.0591 -4.0792 -0.9947 41 1 -0.4634 -8.4952 -0.2257 42 1 0.4625 -2.2299 0.9799 43 1 2.0528 -2.5482 1.7988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999480357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:41 Heat of formation + Delta-G solvation = 35.760463 kcal Electronic energy + Delta-G solvation = -21680.882339 eV Core-core repulsion = 18535.221871 eV Total energy + Delta-G solvation = -3145.660468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.63243 -40.34135 -38.85299 -36.24999 -35.03604 -34.34415 -32.54103 -28.03392 -26.96826 -26.57327 -26.47932 -25.25529 -23.93719 -22.97708 -20.91592 -20.09277 -19.36566 -19.11335 -18.36823 -17.47198 -16.61784 -16.48934 -16.11288 -16.05576 -15.79991 -15.45278 -14.79199 -14.72329 -14.18456 -13.69118 -13.63257 -13.58247 -13.33588 -13.21179 -13.19546 -12.92138 -12.82187 -12.43586 -12.31077 -12.25801 -12.09148 -11.82547 -11.78412 -11.55366 -11.24638 -11.00349 -10.93326 -10.73298 -10.53507 -9.59222 -9.30087 -8.02824 -5.37159 1.37730 1.42411 1.48544 1.49720 1.96596 2.48658 2.78808 3.26653 3.31825 3.57992 3.67949 3.71287 3.75086 3.80266 3.89357 3.96171 3.99766 4.09394 4.19445 4.31415 4.51998 4.56103 4.67339 4.73895 4.78414 4.81234 4.82435 4.86513 4.90652 4.93612 5.03821 5.05755 5.10055 5.10428 5.17350 5.36580 5.41186 5.52767 5.62863 5.76407 6.21474 6.45504 7.06377 7.19147 7.81542 8.02440 9.18708 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042414 B = 0.003243 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.001289 B = 8631.448694 C = 8915.825062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.598 5.598 3 C 0.534 3.466 4 O -0.580 6.580 5 C -0.184 4.184 6 H 0.148 0.852 7 C -0.107 4.107 8 C -0.139 4.139 9 C -0.088 4.088 10 C -0.133 4.133 11 C -0.095 4.095 12 C 0.130 3.870 13 C -0.150 4.150 14 C 0.156 3.844 15 N -0.736 5.736 16 C -0.236 4.236 17 H 0.055 0.945 18 C -0.067 4.067 19 N -0.985 5.985 20 Si 0.959 3.041 21 H -0.275 1.275 22 H -0.249 1.249 23 H -0.298 1.298 24 C -0.160 4.160 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.368 0.632 41 H 0.258 0.742 42 H 0.090 0.910 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 30.015 -1.000 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.328 5.328 3 C 0.324 3.676 4 O -0.461 6.461 5 C -0.205 4.205 6 H 0.166 0.834 7 C -0.144 4.144 8 C -0.139 4.139 9 C -0.125 4.125 10 C -0.171 4.171 11 C -0.133 4.133 12 C 0.026 3.974 13 C -0.189 4.189 14 C 0.046 3.954 15 N -0.378 5.378 16 C -0.367 4.367 17 H 0.073 0.927 18 C -0.258 4.258 19 N -0.635 5.635 20 Si 0.786 3.214 21 H -0.200 1.200 22 H -0.173 1.173 23 H -0.225 1.225 24 C -0.202 4.202 25 H 0.086 0.914 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.202 0.798 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.916 29.800 -0.922 29.828 hybrid contribution -0.620 -1.004 -0.299 1.218 sum -1.537 28.796 -1.221 28.863 Atomic orbital electron populations 1.22029 0.77668 1.04354 1.03140 1.47849 1.08098 1.04822 1.72053 1.20319 0.87150 0.85363 0.74786 1.90652 1.15689 1.87867 1.51866 1.22258 1.02766 0.88647 1.06827 0.83411 1.22863 1.02601 0.99429 0.89558 1.22488 0.95797 0.94189 1.01435 1.22481 0.97836 0.93093 0.99064 1.22800 0.96963 0.95035 1.02258 1.22308 0.93412 0.96711 1.00861 1.22190 0.96929 0.81304 0.96997 1.23796 1.02628 0.95230 0.97295 1.21575 0.92158 0.86981 0.94691 1.42622 1.19687 1.05471 1.69981 1.19089 1.02452 0.85344 1.29833 0.92708 1.25579 1.02439 0.95220 1.02548 1.69903 1.36320 1.02995 1.54321 0.85355 0.79621 0.77622 0.78849 1.20044 1.17305 1.22524 1.24081 1.01564 0.95666 0.98865 0.91399 0.88314 0.90903 0.84620 0.89533 0.89393 0.89252 0.89208 0.90535 0.93209 0.91551 0.88031 0.91171 0.89078 0.90857 0.79774 0.93332 0.89150 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 8.87 127.77 1.13 2.35 16 2 N -0.60 -14.66 3.08 -819.65 -2.53 -17.18 16 3 C 0.53 13.97 7.46 87.66 0.65 14.63 16 4 O -0.58 -19.71 14.62 -3.05 -0.04 -19.75 16 5 C -0.18 -3.27 5.29 -11.68 -0.06 -3.33 16 6 H 0.15 1.83 6.44 -2.39 -0.02 1.81 16 7 C -0.11 -1.58 10.23 30.45 0.31 -1.27 16 8 C -0.14 -2.36 2.88 -52.37 -0.15 -2.51 16 9 C -0.09 -1.05 8.10 30.98 0.25 -0.80 16 10 C -0.13 -1.78 8.08 31.19 0.25 -1.53 16 11 C -0.10 -1.95 6.47 30.98 0.20 -1.75 16 12 C 0.13 3.78 4.20 45.52 0.19 3.98 16 13 C -0.15 -4.52 7.37 31.12 0.23 -4.29 16 14 C 0.16 5.82 4.48 45.52 0.20 6.02 16 15 N -0.74 -33.47 5.20 -320.45 -1.67 -35.14 16 16 C -0.24 -13.38 10.45 84.03 0.88 -12.50 16 17 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 18 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 19 N -0.99 -63.16 13.97 21.65 0.30 -62.85 16 20 Si 0.96 44.39 27.74 68.60 1.90 46.29 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.25 -10.21 6.52 99.48 0.65 -9.56 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 C -0.16 -5.09 7.30 31.12 0.23 -4.86 16 25 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.10 1.14 6.00 -2.39 -0.01 1.13 16 27 H 0.07 1.35 6.34 -2.39 -0.02 1.34 16 28 H 0.14 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.60 8.04 -2.39 -0.02 1.58 16 36 H 0.10 3.27 7.24 -2.39 -0.02 3.25 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.09 2.56 6.90 -2.38 -0.02 2.54 16 39 H 0.07 2.92 8.10 -2.39 -0.02 2.90 16 40 H 0.37 15.70 5.78 -92.71 -0.54 15.16 16 41 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 42 H 0.09 2.74 6.72 -2.39 -0.02 2.72 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -72.31 341.38 3.16 -69.16 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.40 Total: 28.78 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 4.79 Total: -9.30 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -3.89 Total: -115.18 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.04 Total: -19.75 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.90 Total: 46.29 kcal Total: -72.31 3.16 -69.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999480357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.918 kcal (2) G-P(sol) polarization free energy of solvation -72.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds