Wall clock time and date at job start Fri Apr 10 2020 17:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36931 * 120.00424 * 2 1 4 4 H 1.08000 * 120.00434 * 159.88453 * 3 2 1 5 5 C 1.38817 * 119.99750 * 339.87869 * 3 2 1 6 6 N 1.31625 * 120.00074 * 343.60646 * 5 3 2 7 7 Si 1.86801 * 120.00010 * 163.60138 * 5 3 2 8 8 H 1.48508 * 109.46810 * 90.00403 * 7 5 3 9 9 H 1.48501 * 109.46940 * 209.99882 * 7 5 3 10 10 H 1.48495 * 109.47161 * 330.00657 * 7 5 3 11 11 C 1.46503 * 119.99441 * 179.72155 * 2 1 3 12 12 H 1.09007 * 109.49244 * 180.21178 * 11 2 1 13 13 C 1.53037 * 109.49809 * 300.27420 * 11 2 1 14 14 C 1.53045 * 109.53683 * 181.32004 * 13 11 2 15 15 C 1.53191 * 109.31278 * 298.63736 * 14 13 11 16 16 N 1.46927 * 108.77641 * 54.63251 * 15 14 13 17 17 C 1.34776 * 120.62880 * 126.37200 * 16 15 14 18 18 O 1.21614 * 120.00025 * 175.15114 * 17 16 15 19 19 C 1.47106 * 120.00133 * 355.15287 * 17 16 15 20 20 C 1.32613 * 124.62469 * 201.89348 * 19 17 16 21 21 C 1.51103 * 110.76045 * 180.02562 * 20 19 17 22 22 C 1.54572 * 104.84283 * 16.59546 * 21 20 19 23 23 C 1.51115 * 124.61622 * 21.59057 * 19 17 16 24 24 C 1.46919 * 118.73978 * 306.39428 * 16 15 14 25 25 H 1.09003 * 109.47145 * 84.84067 * 1 2 3 26 26 H 1.08996 * 109.47391 * 204.84257 * 1 2 3 27 27 H 1.09003 * 109.46892 * 324.84128 * 1 2 3 28 28 H 0.97001 * 119.99945 * 179.97438 * 6 5 3 29 29 H 1.08997 * 109.46429 * 301.33549 * 13 11 2 30 30 H 1.09001 * 109.46016 * 61.31622 * 13 11 2 31 31 H 1.08997 * 109.50046 * 58.58724 * 14 13 11 32 32 H 1.09004 * 109.49627 * 178.68490 * 14 13 11 33 33 H 1.09005 * 109.58849 * 174.42630 * 15 14 13 34 34 H 1.09009 * 109.58040 * 294.84568 * 15 14 13 35 35 H 1.08001 * 124.61576 * 0.02562 * 20 19 17 36 36 H 1.09001 * 110.36744 * 135.44039 * 21 20 19 37 37 H 1.09005 * 110.36120 * 257.75329 * 21 20 19 38 38 H 1.09001 * 110.98143 * 93.07595 * 22 21 20 39 39 H 1.08997 * 110.98330 * 216.83420 * 22 21 20 40 40 H 1.08995 * 110.36594 * 282.24153 * 23 19 17 41 41 H 1.08991 * 110.36947 * 44.56339 * 23 19 17 42 42 H 1.09000 * 109.58880 * 293.82003 * 24 16 15 43 43 H 1.08996 * 109.58638 * 173.39881 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1804 1.2143 0.3216 5 6 1.5193 2.3513 -0.4136 6 7 0.3980 2.2851 -1.0998 7 14 2.2620 4.0137 0.0039 8 1 3.1908 4.4268 -1.0787 9 1 1.1785 5.0204 0.1375 10 1 3.0072 3.9153 1.2846 11 6 2.1974 -1.2688 0.0062 12 1 3.2692 -1.0701 0.0090 13 6 1.8229 -2.0687 1.2559 14 6 2.6122 -3.3797 1.2801 15 6 2.2494 -4.2123 0.0464 16 7 2.4701 -3.3971 -1.1559 17 6 3.2454 -3.8510 -2.1605 18 8 3.3497 -3.2070 -3.1869 19 6 3.9655 -5.1256 -2.0156 20 6 5.0398 -5.4676 -2.7138 21 6 5.5235 -6.8420 -2.3135 22 6 4.3337 -7.4758 -1.5572 23 6 3.5856 -6.2208 -1.0463 24 6 1.8300 -2.0774 -1.2420 25 1 -0.3633 0.0924 -1.0235 26 1 -0.3634 -0.9325 0.4317 27 1 -0.3633 0.8402 0.5918 28 1 -0.0427 3.0996 -1.3885 29 1 2.0608 -1.4853 2.1454 30 1 0.7553 -2.2881 1.2403 31 1 3.6801 -3.1617 1.2706 32 1 2.3623 -3.9382 2.1822 33 1 2.8800 -5.1005 0.0065 34 1 1.2015 -4.5077 0.1003 35 1 5.5055 -4.8482 -3.4661 36 1 5.7678 -7.4307 -3.1978 37 1 6.3909 -6.7628 -1.6581 38 1 3.7088 -8.0603 -2.2324 39 1 4.6816 -8.0862 -0.7238 40 1 3.9116 -5.9650 -0.0382 41 1 2.5089 -6.3887 -1.0665 42 1 0.7480 -2.1988 -1.2932 43 1 2.1838 -1.5570 -2.1319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027363320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:13 Heat of formation + Delta-G solvation = 26.000395 kcal Electronic energy + Delta-G solvation = -22538.091078 eV Core-core repulsion = 19392.007382 eV Total energy + Delta-G solvation = -3146.083696 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.35098 -38.14226 -37.14179 -35.07838 -32.32242 -31.30247 -29.85322 -29.28347 -27.89882 -25.98232 -25.30145 -23.50163 -21.96827 -21.20139 -20.84743 -18.86935 -18.27208 -16.84709 -16.48941 -15.94212 -15.81579 -15.01344 -14.50320 -14.42464 -14.06523 -13.68682 -13.49289 -13.02271 -12.76507 -12.63213 -12.46912 -12.31357 -12.16320 -11.86040 -11.76910 -11.55785 -11.45204 -11.01309 -10.85316 -10.75136 -10.40240 -10.33906 -10.22074 -10.10785 -9.81617 -9.73121 -9.45568 -9.04699 -8.54278 -8.20658 -6.75290 -5.69906 -3.12713 1.45506 3.25485 3.41575 3.45808 3.47757 3.50170 4.29063 4.36986 4.52586 4.70701 4.76685 5.00933 5.12997 5.21400 5.33292 5.35525 5.42106 5.47689 5.48335 5.55364 5.60312 5.66305 5.73282 5.84713 5.90784 5.95255 6.05147 6.18260 6.21058 6.27676 6.42660 6.45219 6.55536 6.72998 6.82542 6.97013 7.03725 7.39408 7.73220 7.77943 7.84135 8.40255 8.49920 9.25647 9.89485 10.37235 11.35283 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029150 B = 0.004239 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.307295 B = 6603.478616 C = 6963.853699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.903 3.097 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.169 3.831 12 H 0.063 0.937 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.062 3.938 16 N -0.597 5.597 17 C 0.558 3.442 18 O -0.544 6.544 19 C -0.185 4.185 20 C -0.086 4.086 21 C -0.105 4.105 22 C -0.127 4.127 23 C -0.094 4.094 24 C 0.098 3.902 25 H 0.029 0.971 26 H 0.000 1.000 27 H 0.042 0.958 28 H 0.252 0.748 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.063 0.937 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -20.521 3.322 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.385 4.385 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.733 3.267 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.206 1.206 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.060 4.060 16 N -0.330 5.330 17 C 0.347 3.653 18 O -0.423 6.423 19 C -0.188 4.188 20 C -0.106 4.106 21 C -0.142 4.142 22 C -0.164 4.164 23 C -0.130 4.130 24 C -0.026 4.026 25 H 0.048 0.952 26 H 0.019 0.981 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.154 0.846 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.025 -19.982 2.732 21.049 hybrid contribution 0.159 1.143 0.172 1.167 sum 6.185 -18.839 2.904 20.039 Atomic orbital electron populations 1.20785 0.82579 0.95523 0.99455 1.43961 1.01866 1.00057 1.85473 1.19218 0.96883 0.84753 1.37680 0.91338 1.24950 0.97975 0.98318 0.98373 1.70102 1.19541 1.26797 1.38534 0.86278 0.78100 0.84052 0.78244 1.21436 1.21593 1.20588 1.20613 0.96385 0.86151 0.90849 0.91829 1.22086 0.99630 0.95097 1.00473 1.21899 1.00904 0.97259 0.96897 1.22919 1.02328 0.96061 0.84733 1.48128 1.48274 1.18982 1.17592 1.18031 0.79089 0.84873 0.83271 1.90798 1.64272 1.58900 1.28331 1.21885 0.99577 0.96051 1.01281 1.23968 0.94455 0.96355 0.95799 1.21449 0.98738 0.93468 1.00531 1.22554 0.96820 0.96968 1.00086 1.21623 1.01236 0.92422 0.97708 1.22540 0.96755 0.81018 1.02251 0.95234 0.98110 0.93928 0.93755 0.91796 0.92331 0.91880 0.91416 0.86409 0.91912 0.84618 0.90393 0.89813 0.90794 0.90537 0.88893 0.90213 0.92158 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 7.93 59.85 0.47 4.46 16 2 N -0.59 -15.05 2.82 -173.34 -0.49 -15.53 16 3 C -0.26 -7.19 9.61 -15.06 -0.14 -7.34 16 4 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 5 C 0.00 0.06 5.03 -17.43 -0.09 -0.02 16 6 N -0.90 -26.90 10.74 55.49 0.60 -26.31 16 7 Si 0.90 22.30 29.58 -169.99 -5.03 17.27 16 8 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 C 0.17 3.57 2.74 -67.81 -0.19 3.38 16 12 H 0.06 1.42 7.85 -51.93 -0.41 1.01 16 13 C -0.13 -2.26 5.13 -26.69 -0.14 -2.39 16 14 C -0.13 -1.68 6.08 -26.61 -0.16 -1.85 16 15 C 0.06 0.77 5.70 -3.71 -0.02 0.74 16 16 N -0.60 -10.01 2.97 -174.16 -0.52 -10.53 16 17 C 0.56 9.79 7.62 -12.66 -0.10 9.69 16 18 O -0.54 -11.90 16.31 5.27 0.09 -11.81 16 19 C -0.18 -2.37 5.86 -102.72 -0.60 -2.97 16 20 C -0.09 -0.97 10.49 -36.01 -0.38 -1.35 16 21 C -0.10 -0.80 6.79 -26.86 -0.18 -0.98 16 22 C -0.13 -0.87 7.17 -24.97 -0.18 -1.05 16 23 C -0.09 -0.82 4.42 -26.74 -0.12 -0.94 16 24 C 0.10 2.00 5.78 -3.72 -0.02 1.98 16 25 H 0.03 0.80 7.40 -51.93 -0.38 0.41 16 26 H 0.00 0.01 6.45 -51.93 -0.33 -0.33 16 27 H 0.04 1.13 7.24 -51.93 -0.38 0.75 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.99 6.71 -51.93 -0.35 0.64 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.12 1.15 2.03 -76.15 -0.15 1.00 16 34 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 35 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.70 6.55 -51.93 -0.34 0.36 16 41 H 0.08 0.67 7.36 -51.93 -0.38 0.29 16 42 H 0.06 1.24 7.52 -51.93 -0.39 0.85 16 43 H 0.09 2.17 7.03 -51.93 -0.37 1.80 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -33.01 329.54 -9.06 -42.07 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.83 Total: -1.49 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.84 Total: 1.38 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.41 Total: -52.37 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.01 -9.06 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027363320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.071 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds