Wall clock time and date at job start Fri Apr 10 2020 17:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36931 * 120.00424 * 2 1 4 4 H 1.08000 * 120.00434 * 159.88453 * 3 2 1 5 5 C 1.38817 * 119.99750 * 339.87869 * 3 2 1 6 6 N 1.31625 * 120.00074 * 343.60646 * 5 3 2 7 7 Si 1.86801 * 120.00010 * 163.60138 * 5 3 2 8 8 H 1.48508 * 109.46810 * 90.00403 * 7 5 3 9 9 H 1.48501 * 109.46940 * 209.99882 * 7 5 3 10 10 H 1.48495 * 109.47161 * 330.00657 * 7 5 3 11 11 C 1.46503 * 119.99441 * 179.72155 * 2 1 3 12 12 H 1.09007 * 109.49244 * 180.21178 * 11 2 1 13 13 C 1.53037 * 109.49809 * 300.27420 * 11 2 1 14 14 C 1.53045 * 109.53683 * 181.32004 * 13 11 2 15 15 C 1.53191 * 109.31278 * 298.63736 * 14 13 11 16 16 N 1.46927 * 108.77641 * 54.63251 * 15 14 13 17 17 C 1.34776 * 120.62880 * 126.37200 * 16 15 14 18 18 O 1.21614 * 120.00025 * 175.15114 * 17 16 15 19 19 C 1.47106 * 120.00133 * 355.15287 * 17 16 15 20 20 C 1.32613 * 124.62469 * 201.89348 * 19 17 16 21 21 C 1.51103 * 110.76045 * 180.02562 * 20 19 17 22 22 C 1.54572 * 104.84283 * 16.59546 * 21 20 19 23 23 C 1.51115 * 124.61622 * 21.59057 * 19 17 16 24 24 C 1.46919 * 118.73978 * 306.39428 * 16 15 14 25 25 H 1.09003 * 109.47145 * 84.84067 * 1 2 3 26 26 H 1.08996 * 109.47391 * 204.84257 * 1 2 3 27 27 H 1.09003 * 109.46892 * 324.84128 * 1 2 3 28 28 H 0.97001 * 119.99945 * 179.97438 * 6 5 3 29 29 H 1.08997 * 109.46429 * 301.33549 * 13 11 2 30 30 H 1.09001 * 109.46016 * 61.31622 * 13 11 2 31 31 H 1.08997 * 109.50046 * 58.58724 * 14 13 11 32 32 H 1.09004 * 109.49627 * 178.68490 * 14 13 11 33 33 H 1.09005 * 109.58849 * 174.42630 * 15 14 13 34 34 H 1.09009 * 109.58040 * 294.84568 * 15 14 13 35 35 H 1.08001 * 124.61576 * 0.02562 * 20 19 17 36 36 H 1.09001 * 110.36744 * 135.44039 * 21 20 19 37 37 H 1.09005 * 110.36120 * 257.75329 * 21 20 19 38 38 H 1.09001 * 110.98143 * 93.07595 * 22 21 20 39 39 H 1.08997 * 110.98330 * 216.83420 * 22 21 20 40 40 H 1.08995 * 110.36594 * 282.24153 * 23 19 17 41 41 H 1.08991 * 110.36947 * 44.56339 * 23 19 17 42 42 H 1.09000 * 109.58880 * 293.82003 * 24 16 15 43 43 H 1.08996 * 109.58638 * 173.39881 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1804 1.2143 0.3216 5 6 1.5193 2.3513 -0.4136 6 7 0.3980 2.2851 -1.0998 7 14 2.2620 4.0137 0.0039 8 1 3.1908 4.4268 -1.0787 9 1 1.1785 5.0204 0.1375 10 1 3.0072 3.9153 1.2846 11 6 2.1974 -1.2688 0.0062 12 1 3.2692 -1.0701 0.0090 13 6 1.8229 -2.0687 1.2559 14 6 2.6122 -3.3797 1.2801 15 6 2.2494 -4.2123 0.0464 16 7 2.4701 -3.3971 -1.1559 17 6 3.2454 -3.8510 -2.1605 18 8 3.3497 -3.2070 -3.1869 19 6 3.9655 -5.1256 -2.0156 20 6 5.0398 -5.4676 -2.7138 21 6 5.5235 -6.8420 -2.3135 22 6 4.3337 -7.4758 -1.5572 23 6 3.5856 -6.2208 -1.0463 24 6 1.8300 -2.0774 -1.2420 25 1 -0.3633 0.0924 -1.0235 26 1 -0.3634 -0.9325 0.4317 27 1 -0.3633 0.8402 0.5918 28 1 -0.0427 3.0996 -1.3885 29 1 2.0608 -1.4853 2.1454 30 1 0.7553 -2.2881 1.2403 31 1 3.6801 -3.1617 1.2706 32 1 2.3623 -3.9382 2.1822 33 1 2.8800 -5.1005 0.0065 34 1 1.2015 -4.5077 0.1003 35 1 5.5055 -4.8482 -3.4661 36 1 5.7678 -7.4307 -3.1978 37 1 6.3909 -6.7628 -1.6581 38 1 3.7088 -8.0603 -2.2324 39 1 4.6816 -8.0862 -0.7238 40 1 3.9116 -5.9650 -0.0382 41 1 2.5089 -6.3887 -1.0665 42 1 0.7480 -2.1988 -1.2932 43 1 2.1838 -1.5570 -2.1319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027363320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:13 Heat of formation + Delta-G solvation = 5.372861 kcal Electronic energy + Delta-G solvation = -22538.985555 eV Core-core repulsion = 19392.007382 eV Total energy + Delta-G solvation = -3146.978173 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57816 -39.30153 -38.48332 -36.82773 -34.02609 -32.85264 -31.22978 -30.17338 -29.01978 -28.08885 -26.59883 -25.26743 -23.24176 -22.29661 -21.91316 -20.38582 -19.37310 -18.82866 -17.74487 -17.19942 -16.94308 -16.66514 -15.91130 -15.83883 -15.35081 -15.23778 -15.07242 -14.44186 -14.18608 -13.98310 -13.75426 -13.48301 -13.44285 -12.99390 -12.93743 -12.85400 -12.58104 -12.52554 -12.30153 -12.21543 -12.11203 -11.98283 -11.92698 -11.74686 -11.43053 -11.22311 -10.73886 -10.65831 -9.99026 -9.58802 -8.82892 -7.87627 -5.33446 0.42974 1.43003 1.43608 1.53992 1.94707 2.21257 2.48729 3.25161 3.43756 3.58553 3.65662 3.85723 3.99192 4.08198 4.17129 4.23300 4.26645 4.33852 4.35545 4.59605 4.65913 4.73577 4.76977 4.81489 4.88913 4.91063 4.93119 5.03738 5.07971 5.13248 5.22214 5.25542 5.34869 5.40375 5.43278 5.50660 5.53410 5.54774 5.60762 5.66345 6.27095 6.48197 7.09431 7.14182 7.82185 8.24458 9.15715 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029150 B = 0.004239 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.307295 B = 6603.478616 C = 6963.853699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.609 5.609 3 C -0.269 4.269 4 H 0.067 0.933 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.970 3.030 8 H -0.288 1.288 9 H -0.289 1.289 10 H -0.268 1.268 11 C 0.168 3.832 12 H 0.042 0.958 13 C -0.123 4.123 14 C -0.122 4.122 15 C 0.056 3.944 16 N -0.597 5.597 17 C 0.547 3.453 18 O -0.606 6.606 19 C -0.210 4.210 20 C -0.078 4.078 21 C -0.100 4.100 22 C -0.117 4.117 23 C -0.092 4.092 24 C 0.113 3.887 25 H -0.003 1.003 26 H 0.037 0.963 27 H 0.018 0.982 28 H 0.249 0.751 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.155 0.845 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 -23.929 5.706 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.332 5.332 3 C -0.399 4.399 4 H 0.085 0.915 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.797 3.203 8 H -0.215 1.215 9 H -0.215 1.215 10 H -0.193 1.193 11 C 0.060 3.940 12 H 0.061 0.939 13 C -0.162 4.162 14 C -0.160 4.160 15 C -0.064 4.064 16 N -0.328 5.328 17 C 0.338 3.662 18 O -0.490 6.490 19 C -0.213 4.213 20 C -0.098 4.098 21 C -0.137 4.137 22 C -0.155 4.155 23 C -0.128 4.128 24 C -0.013 4.013 25 H 0.015 0.985 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.171 0.829 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.202 -23.453 5.167 25.072 hybrid contribution -0.127 2.156 -0.651 2.256 sum 7.074 -21.297 4.515 22.891 Atomic orbital electron populations 1.20489 0.82468 0.96256 0.97313 1.44201 1.02237 1.01014 1.85707 1.19547 0.97067 0.86221 1.37097 0.91501 1.25756 0.98685 1.01758 0.98574 1.70271 1.20971 1.27296 1.39822 0.85242 0.77233 0.79561 0.78222 1.21510 1.21497 1.19250 1.20771 0.94756 0.85250 0.93211 0.93925 1.21934 1.00571 0.96543 0.97174 1.21900 1.00033 0.95218 0.98896 1.23390 1.04303 0.96404 0.82305 1.48194 1.47624 1.17739 1.19201 1.18950 0.78685 0.86186 0.82331 1.90756 1.66295 1.61147 1.30785 1.21858 1.00196 0.95049 1.04189 1.24336 0.93511 0.98004 0.93952 1.21541 0.99728 0.90747 1.01675 1.22569 0.95903 0.96082 1.00918 1.21678 1.02126 0.91573 0.97407 1.21993 0.96424 0.83088 0.99750 0.98454 0.94452 0.96321 0.94194 0.92376 0.91881 0.92044 0.87028 0.82876 0.90319 0.86514 0.88919 0.87870 0.90440 0.87657 0.86835 0.89507 0.92536 0.94237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.18 7.93 127.77 1.01 10.20 16 2 N -0.61 -32.07 2.82 -702.33 -1.98 -34.05 16 3 C -0.27 -15.65 9.61 84.04 0.81 -14.84 16 4 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 5 C -0.05 -3.09 5.03 84.86 0.43 -2.66 16 6 N -0.94 -57.99 10.74 21.65 0.23 -57.76 16 7 Si 0.97 46.99 29.58 68.60 2.03 49.02 16 8 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 9 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 C 0.17 7.26 2.74 45.07 0.12 7.38 16 12 H 0.04 1.98 7.85 -2.38 -0.02 1.96 16 13 C -0.12 -3.96 5.13 30.62 0.16 -3.80 16 14 C -0.12 -2.69 6.08 30.67 0.19 -2.51 16 15 C 0.06 1.20 5.70 86.36 0.49 1.69 16 16 N -0.60 -20.02 2.97 -823.18 -2.45 -22.47 16 17 C 0.55 19.69 7.62 86.57 0.66 20.35 16 18 O -0.61 -28.51 16.31 -4.08 -0.07 -28.57 16 19 C -0.21 -5.08 5.86 -18.56 -0.11 -5.19 16 20 C -0.08 -1.66 10.49 24.65 0.26 -1.40 16 21 C -0.10 -1.13 6.79 30.51 0.21 -0.92 16 22 C -0.12 -1.02 7.17 31.74 0.23 -0.80 16 23 C -0.09 -1.22 4.42 30.59 0.14 -1.09 16 24 C 0.11 4.83 5.78 86.36 0.50 5.33 16 25 H 0.00 -0.16 7.40 -2.39 -0.02 -0.18 16 26 H 0.04 1.59 6.45 -2.39 -0.02 1.58 16 27 H 0.02 1.00 7.24 -2.39 -0.02 0.99 16 28 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.98 6.71 -2.39 -0.02 1.96 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.15 2.30 2.03 -25.14 -0.05 2.25 16 34 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.11 1.05 6.55 -2.39 -0.02 1.04 16 41 H 0.09 1.07 7.36 -2.39 -0.02 1.05 16 42 H 0.06 2.42 7.52 -2.39 -0.02 2.40 16 43 H 0.04 2.07 7.03 -2.39 -0.02 2.05 16 Total: -1.00 -78.84 329.54 3.80 -75.04 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 0.94 Total: 7.04 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.09 Total: 11.74 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -4.19 Total: -114.28 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.07 Total: -28.57 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -78.84 3.80 -75.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027363320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.417 kcal (2) G-P(sol) polarization free energy of solvation -78.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds