Wall clock time and date at job start Fri Apr 10 2020 17:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00153 * 2 1 4 4 H 1.08004 * 119.99822 * 202.06457 * 3 2 1 5 5 C 1.38811 * 119.99943 * 22.06593 * 3 2 1 6 6 N 1.31615 * 119.99942 * 12.40699 * 5 3 2 7 7 Si 1.86796 * 119.99960 * 192.40264 * 5 3 2 8 8 H 1.48501 * 109.47280 * 59.99802 * 7 5 3 9 9 H 1.48497 * 109.47221 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47317 * 300.00270 * 7 5 3 11 11 C 1.46505 * 119.99961 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.49662 * 180.02562 * 11 2 1 13 13 C 1.53033 * 109.49657 * 60.00029 * 11 2 1 14 14 C 1.53040 * 109.53888 * 178.65347 * 13 11 2 15 15 C 1.53187 * 109.31554 * 61.36438 * 14 13 11 16 16 N 1.46930 * 108.77618 * 305.36902 * 15 14 13 17 17 C 1.34779 * 120.63124 * 233.59048 * 16 15 14 18 18 O 1.21276 * 120.00065 * 180.02562 * 17 16 15 19 19 C 1.50697 * 119.99886 * 359.97438 * 17 16 15 20 20 H 1.08998 * 115.56137 * 34.32044 * 19 17 16 21 21 C 1.53001 * 117.50066 * 248.62677 * 19 17 16 22 22 C 1.52998 * 59.99966 * 252.51347 * 21 19 17 23 23 C 1.52993 * 138.59009 * 130.89577 * 22 21 19 24 24 C 1.52990 * 138.58526 * 229.11170 * 22 21 19 25 25 C 1.46923 * 118.73920 * 53.85276 * 16 15 14 26 26 H 1.09004 * 109.47116 * 274.30775 * 1 2 3 27 27 H 1.08995 * 109.46667 * 34.30596 * 1 2 3 28 28 H 1.08995 * 109.46788 * 154.31079 * 1 2 3 29 29 H 0.97007 * 119.99686 * 180.02562 * 6 5 3 30 30 H 1.09002 * 109.45897 * 58.63191 * 13 11 2 31 31 H 1.09000 * 109.45889 * 298.67125 * 13 11 2 32 32 H 1.09003 * 109.49478 * 301.41341 * 14 13 11 33 33 H 1.08999 * 109.50114 * 181.32157 * 14 13 11 34 34 H 1.09001 * 109.58802 * 185.58494 * 15 14 13 35 35 H 1.08997 * 109.58542 * 65.15347 * 15 14 13 36 36 H 1.09003 * 117.49824 * 145.02435 * 21 19 17 37 37 H 1.09000 * 117.50248 * 0.02562 * 21 19 17 38 38 H 1.08993 * 117.50033 * 23.40085 * 23 22 21 39 39 H 1.09002 * 117.49390 * 238.38367 * 23 22 21 40 40 H 1.09008 * 117.49807 * 121.62053 * 24 22 21 41 41 H 1.08999 * 117.50326 * 336.59058 * 24 22 21 42 42 H 1.09006 * 109.58191 * 65.93142 * 25 16 15 43 43 H 1.09000 * 109.58812 * 186.35320 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2201 -0.3514 5 6 1.5319 2.3440 0.4516 6 7 0.3900 2.2701 1.1018 7 14 2.3214 4.0074 0.1367 8 1 2.4587 4.2212 -1.3264 9 1 1.4699 5.0771 0.7160 10 1 3.6638 4.0462 0.7706 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0701 0.0009 13 6 1.8282 -2.0723 -1.2484 14 6 2.6181 -3.3830 -1.2658 15 6 2.2509 -4.2123 -0.0313 16 7 2.4666 -3.3938 1.1696 17 6 3.2376 -3.8449 2.1788 18 8 3.4075 -3.1599 3.1651 19 6 3.8876 -5.2010 2.0822 20 1 4.2014 -5.5021 1.0828 21 6 3.3812 -6.2959 3.0234 22 6 4.7507 -5.6562 3.2607 23 6 5.5418 -5.0324 4.4121 24 6 6.1920 -6.0958 3.5249 25 6 1.8210 -2.0765 1.2519 26 1 -0.3633 0.0772 1.0248 27 1 -0.3632 0.8489 -0.5792 28 1 -0.3633 -0.9261 -0.4455 29 1 -0.0419 3.0795 1.4170 30 1 2.0693 -1.4911 -2.1385 31 1 0.7607 -2.2919 -1.2364 32 1 3.6859 -3.1644 -1.2528 33 1 2.3722 -3.9441 -2.1674 34 1 2.8819 -5.1000 0.0134 35 1 1.2035 -4.5085 -0.0884 36 1 3.3618 -7.3172 2.6431 37 1 2.5776 -6.0354 3.7123 38 1 5.2674 -5.3221 5.4263 39 1 5.8778 -4.0024 4.2918 40 1 6.9560 -5.7655 2.8210 41 1 6.3456 -7.0853 3.9556 42 1 0.7392 -2.2020 1.2973 43 1 2.1681 -1.5546 2.1437 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027590450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:15 Heat of formation + Delta-G solvation = 33.462651 kcal Electronic energy + Delta-G solvation = -22328.177679 eV Core-core repulsion = 19182.417570 eV Total energy + Delta-G solvation = -3145.760109 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38540 -39.40381 -38.11558 -36.76714 -34.12614 -33.38694 -32.81850 -30.52976 -28.08416 -26.90448 -25.50074 -24.10915 -23.27770 -23.04671 -21.25039 -20.36922 -19.42523 -18.79526 -18.30005 -17.06415 -16.84565 -16.29887 -15.88420 -15.78390 -15.50217 -15.22728 -15.19010 -14.97200 -14.39930 -14.03534 -13.89181 -13.67020 -13.28193 -12.96500 -12.81859 -12.64848 -12.50064 -12.36414 -12.24330 -12.18446 -12.09394 -11.75247 -11.65947 -11.41573 -11.15625 -11.01008 -10.90948 -10.67397 -10.65161 -9.68366 -8.79453 -7.86603 -5.35004 1.42540 1.44713 1.48271 1.51999 1.91998 2.48005 2.74766 2.82157 3.26712 3.33714 3.57602 3.63784 3.83841 3.96086 4.05825 4.08639 4.17511 4.24265 4.35781 4.48668 4.57796 4.65371 4.69133 4.75532 4.78367 4.78699 4.82699 4.90129 4.93971 5.01906 5.03807 5.06993 5.16424 5.24715 5.27847 5.40743 5.50323 5.54987 5.59992 5.68885 6.28928 6.48982 7.11235 7.20789 7.83229 8.25588 9.16095 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.004387 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.104855 B = 6380.581718 C = 7013.930154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.610 5.610 3 C -0.269 4.269 4 H 0.066 0.934 5 C -0.051 4.051 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.273 1.273 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.168 3.832 12 H 0.041 0.959 13 C -0.123 4.123 14 C -0.123 4.123 15 C 0.103 3.897 16 N -0.603 5.603 17 C 0.525 3.475 18 O -0.593 6.593 19 C -0.143 4.143 20 H 0.158 0.842 21 C -0.079 4.079 22 C -0.228 4.228 23 C -0.143 4.143 24 C -0.096 4.096 25 C 0.115 3.885 26 H -0.003 1.003 27 H 0.019 0.981 28 H 0.036 0.964 29 H 0.249 0.751 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.058 0.942 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.636 -22.613 -3.091 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.332 5.332 3 C -0.399 4.399 4 H 0.084 0.916 5 C -0.246 4.246 6 N -0.584 5.584 7 Si 0.798 3.202 8 H -0.199 1.199 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.060 3.940 12 H 0.059 0.941 13 C -0.162 4.162 14 C -0.161 4.161 15 C -0.018 4.018 16 N -0.336 5.336 17 C 0.315 3.685 18 O -0.474 6.474 19 C -0.164 4.164 20 H 0.175 0.825 21 C -0.116 4.116 22 C -0.228 4.228 23 C -0.180 4.180 24 C -0.133 4.133 25 C -0.010 4.010 26 H 0.015 0.985 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.163 0.837 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.142 0.858 42 H 0.076 0.924 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.600 -22.100 -2.540 23.204 hybrid contribution -0.055 2.037 0.379 2.073 sum 6.545 -20.063 -2.161 21.214 Atomic orbital electron populations 1.20484 0.82456 0.96243 0.97201 1.44179 1.02241 1.01007 1.85811 1.19513 0.97988 0.86685 1.35760 0.91629 1.25800 0.98518 1.01914 0.98414 1.70239 1.19682 1.27582 1.40911 0.85301 0.77472 0.79336 0.78093 1.19902 1.21754 1.20637 1.20868 0.94654 0.85256 0.93259 0.94051 1.21926 1.00642 0.96444 0.97194 1.21905 1.00054 0.95271 0.98906 1.22148 1.03424 0.93946 0.82275 1.48304 1.48167 1.17919 1.19174 1.20591 0.77992 0.88129 0.81758 1.90673 1.63278 1.60022 1.33441 1.22045 1.04060 0.92037 0.98246 0.82513 1.22770 0.93281 0.97219 0.98322 1.21459 0.93828 1.07361 1.00199 1.22569 1.02396 0.97946 0.95081 1.22843 0.90226 0.99647 1.00559 1.22035 0.96281 0.83110 0.99619 0.98514 0.96257 0.94565 0.94205 0.92517 0.91741 0.92056 0.87121 0.86212 0.89818 0.83668 0.89710 0.88185 0.91083 0.87853 0.85763 0.92394 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.16 7.91 127.77 1.01 10.17 16 2 N -0.61 -31.79 2.82 -701.53 -1.98 -33.77 16 3 C -0.27 -15.57 9.60 84.03 0.81 -14.76 16 4 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 5 C -0.05 -3.00 5.11 84.86 0.43 -2.56 16 6 N -0.94 -57.68 10.63 21.65 0.23 -57.45 16 7 Si 0.97 46.93 29.57 68.60 2.03 48.96 16 8 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 9 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 11 C 0.17 7.11 2.75 45.21 0.12 7.23 16 12 H 0.04 1.91 7.86 -2.39 -0.02 1.89 16 13 C -0.12 -3.86 5.13 30.62 0.16 -3.70 16 14 C -0.12 -2.60 6.08 30.67 0.19 -2.41 16 15 C 0.10 2.06 6.34 86.36 0.55 2.61 16 16 N -0.60 -19.09 2.97 -818.07 -2.43 -21.52 16 17 C 0.53 17.66 7.48 87.66 0.66 18.32 16 18 O -0.59 -26.52 15.66 -3.02 -0.05 -26.57 16 19 C -0.14 -3.14 5.13 -11.54 -0.06 -3.20 16 20 H 0.16 2.32 6.56 -2.39 -0.02 2.31 16 21 C -0.08 -1.38 10.23 30.59 0.31 -1.06 16 22 C -0.23 -4.94 5.05 -52.19 -0.26 -5.20 16 23 C -0.14 -3.41 10.16 30.59 0.31 -3.10 16 24 C -0.10 -1.55 10.53 30.59 0.32 -1.23 16 25 C 0.11 4.76 5.81 86.51 0.50 5.26 16 26 H 0.00 -0.20 7.41 -2.38 -0.02 -0.21 16 27 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 28 H 0.04 1.52 6.46 -2.39 -0.02 1.51 16 29 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.97 6.72 -2.39 -0.02 1.95 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.12 1.51 5.51 -2.39 -0.01 1.50 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 2.39 7.53 -2.38 -0.02 2.37 16 43 H 0.04 2.01 7.00 -2.39 -0.02 1.99 16 Total: -1.00 -77.24 340.09 3.84 -73.40 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.98 Total: 10.59 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 5.05 Total: 6.36 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.17 Total: -112.74 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.05 Total: -26.57 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -77.24 3.84 -73.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027590450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.866 kcal (2) G-P(sol) polarization free energy of solvation -77.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds