Wall clock time and date at job start Fri Apr 10 2020 17:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 119.99740 * 2 1 4 4 H 1.07996 * 119.99930 * 201.99128 * 3 2 1 5 5 C 1.38814 * 119.99951 * 21.99494 * 3 2 1 6 6 N 1.31618 * 120.00030 * 12.70807 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 192.70896 * 5 3 2 8 8 H 1.48503 * 109.46877 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47142 * 119.99578 * 7 5 3 10 10 H 1.48505 * 109.47145 * 239.99740 * 7 5 3 11 11 C 1.46502 * 120.00553 * 179.97438 * 2 1 3 12 12 H 1.08990 * 109.49788 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49370 * 300.16765 * 11 2 1 14 14 C 1.53044 * 109.53593 * 181.31218 * 13 11 2 15 15 C 1.53197 * 109.31165 * 298.63729 * 14 13 11 16 16 N 1.46917 * 108.77685 * 54.63168 * 15 14 13 17 17 C 1.34778 * 120.62914 * 126.41321 * 16 15 14 18 18 O 1.21283 * 120.00101 * 179.97438 * 17 16 15 19 19 C 1.50704 * 120.00245 * 359.97438 * 17 16 15 20 20 H 1.09000 * 115.54702 * 325.72061 * 19 17 16 21 21 C 1.53000 * 117.50153 * 111.38782 * 19 17 16 22 22 C 1.52990 * 117.50164 * 180.02562 * 19 17 16 23 23 C 1.52991 * 138.58963 * 121.61520 * 22 19 17 24 24 C 1.53000 * 60.00235 * 229.11167 * 23 22 19 25 25 C 1.46928 * 118.74329 * 306.39258 * 16 15 14 26 26 H 1.08999 * 109.47253 * 274.32417 * 1 2 3 27 27 H 1.09001 * 109.46636 * 154.32847 * 1 2 3 28 28 H 1.09004 * 109.47064 * 34.33164 * 1 2 3 29 29 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 30 30 H 1.09000 * 109.46274 * 301.33221 * 13 11 2 31 31 H 1.09007 * 109.46486 * 61.29514 * 13 11 2 32 32 H 1.08997 * 109.50080 * 178.68072 * 14 13 11 33 33 H 1.08995 * 109.49753 * 58.58601 * 14 13 11 34 34 H 1.08996 * 109.58267 * 294.84241 * 15 14 13 35 35 H 1.09004 * 109.70025 * 174.49579 * 15 14 13 36 36 H 1.08992 * 117.49908 * 214.98091 * 21 19 17 37 37 H 1.09004 * 117.49555 * 359.97438 * 21 19 17 38 38 H 1.09006 * 117.49807 * 336.59681 * 23 22 19 39 39 H 1.09001 * 117.50320 * 121.61749 * 23 22 19 40 40 H 1.09005 * 117.49647 * 252.51465 * 24 23 22 41 41 H 1.08993 * 117.52099 * 107.48097 * 24 23 22 42 42 H 1.09002 * 109.58105 * 293.82136 * 25 16 15 43 43 H 1.08991 * 109.59184 * 173.39793 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1707 1.2200 -0.3502 5 6 1.5313 2.3444 0.4502 6 7 0.3916 2.2703 1.1044 7 14 2.3167 4.0082 0.1277 8 1 3.5852 3.8199 -0.6212 9 1 1.3886 4.8469 -0.6727 10 1 2.6010 4.6805 1.4209 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0699 0.0009 13 6 1.8252 -2.0729 1.2482 14 6 2.6146 -3.3840 1.2665 15 6 2.2497 -4.2122 0.0304 16 7 2.4684 -3.3929 -1.1693 17 6 3.2414 -3.8437 -2.1772 18 8 3.4138 -3.1580 -3.1626 19 6 3.8915 -5.1998 -2.0797 20 1 4.2028 -5.5011 -1.0795 21 6 3.3874 -6.2943 -3.0224 22 6 4.7575 -5.6542 -3.2563 23 6 6.1996 -6.0933 -3.5173 24 6 5.5512 -5.0295 -4.4054 25 6 1.8280 -2.0730 -1.2498 26 1 -0.3634 0.0775 1.0247 27 1 -0.3632 -0.9263 -0.4452 28 1 -0.3633 0.8487 -0.5796 29 1 -0.0407 3.0798 1.4187 30 1 2.0645 -1.4925 2.1393 31 1 0.7575 -2.2921 1.2337 32 1 2.3664 -3.9456 2.1670 33 1 3.6824 -3.1658 1.2560 34 1 1.2021 -4.5080 0.0851 35 1 2.8785 -5.1015 -0.0147 36 1 3.3673 -7.3157 -2.6426 37 1 2.5851 -6.0337 -3.7128 38 1 6.9618 -5.7632 -2.8114 39 1 6.3544 -7.0826 -3.9481 40 1 5.2794 -5.3189 -5.4206 41 1 5.8865 -3.9995 -4.2840 42 1 0.7459 -2.1943 -1.2996 43 1 2.1804 -1.5494 -2.1384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027590451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:17 Heat of formation + Delta-G solvation = 52.657181 kcal Electronic energy + Delta-G solvation = -22290.406625 eV Core-core repulsion = 19145.478854 eV Total energy + Delta-G solvation = -3144.927771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17460 -38.21550 -36.85978 -35.05963 -32.84403 -32.09752 -31.28290 -28.84086 -26.02188 -25.61684 -23.94003 -22.86000 -22.49478 -21.58485 -20.13885 -18.96975 -18.28418 -17.18170 -16.69767 -15.71100 -15.37577 -15.11735 -14.75244 -14.45375 -14.04054 -13.99395 -13.62710 -13.52189 -12.66876 -12.66077 -12.50469 -12.25203 -11.92691 -11.76067 -11.57686 -11.04610 -10.93579 -10.83849 -10.64588 -10.39942 -10.32024 -10.28514 -10.18487 -10.09075 -10.05775 -9.85615 -9.75263 -9.42055 -8.59374 -8.28797 -6.74412 -5.70637 -3.16226 2.63687 3.08855 3.39927 3.47350 3.50154 3.62752 3.69752 4.16310 4.51494 4.57245 4.67187 4.88281 5.03608 5.19514 5.27835 5.32521 5.43852 5.47049 5.48294 5.49904 5.54284 5.57026 5.64813 5.77603 5.82682 5.84371 5.90636 6.02797 6.08637 6.18840 6.24995 6.40673 6.54181 6.69075 6.82218 6.96290 7.02445 7.40592 7.68931 7.74043 7.83925 8.39570 8.45701 9.25452 9.88136 10.36209 11.34216 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.004236 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.510490 B = 6608.676349 C = 7254.095233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.593 5.593 3 C -0.253 4.253 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.132 4.132 14 C -0.133 4.133 15 C 0.108 3.892 16 N -0.603 5.603 17 C 0.538 3.462 18 O -0.538 6.538 19 C -0.139 4.139 20 H 0.124 0.876 21 C -0.101 4.101 22 C -0.202 4.202 23 C -0.131 4.131 24 C -0.113 4.113 25 C 0.097 3.903 26 H 0.029 0.971 27 H -0.002 1.002 28 H 0.043 0.957 29 H 0.251 0.749 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 -19.249 -3.686 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.172 4.172 15 C -0.015 4.015 16 N -0.336 5.336 17 C 0.325 3.675 18 O -0.415 6.415 19 C -0.160 4.160 20 H 0.142 0.858 21 C -0.138 4.138 22 C -0.202 4.202 23 C -0.168 4.168 24 C -0.150 4.150 25 C -0.026 4.026 26 H 0.048 0.952 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.081 0.919 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.708 -18.687 -4.150 19.975 hybrid contribution 0.187 0.985 0.220 1.027 sum 5.895 -17.702 -3.931 19.067 Atomic orbital electron populations 1.20785 0.82577 0.95496 0.99313 1.43909 1.01853 1.00048 1.85704 1.19289 0.97756 0.85219 1.35991 0.91356 1.24981 0.97786 0.98414 0.98410 1.70084 1.18521 1.26859 1.39868 0.86186 0.78667 0.84282 0.77452 1.20302 1.21599 1.21767 1.20577 0.96385 0.86245 0.90777 0.91801 1.22117 0.99418 0.94682 1.00936 1.21947 1.01061 0.97504 0.96692 1.21769 1.01340 0.93563 0.84812 1.48127 1.48821 1.18873 1.17736 1.19615 0.78494 0.86699 0.82664 1.90685 1.61505 1.58072 1.31214 1.22025 1.03327 0.94450 0.96227 0.85849 1.22639 0.94941 0.96210 1.00045 1.21146 0.91792 1.06661 1.00627 1.22752 0.91894 0.99652 1.02480 1.22586 0.99949 0.98377 0.94089 1.22410 0.96799 0.81426 1.01991 0.95233 0.98389 0.93784 0.93854 0.91496 0.92455 0.91302 0.91837 0.91518 0.90209 0.87757 0.88165 0.88595 0.88488 0.88648 0.88115 0.91918 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.03 59.85 0.48 4.48 16 2 N -0.59 -14.95 2.82 -173.35 -0.49 -15.43 16 3 C -0.25 -7.07 9.60 -15.06 -0.14 -7.22 16 4 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 5 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 6 N -0.91 -26.55 10.64 55.49 0.59 -25.96 16 7 Si 0.90 22.25 29.57 -169.99 -5.03 17.22 16 8 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 C 0.17 3.52 2.74 -67.81 -0.19 3.33 16 12 H 0.06 1.41 7.86 -51.93 -0.41 1.00 16 13 C -0.13 -2.32 5.14 -26.69 -0.14 -2.45 16 14 C -0.13 -1.74 6.08 -26.61 -0.16 -1.90 16 15 C 0.11 1.30 6.35 -3.71 -0.02 1.28 16 16 N -0.60 -9.45 2.97 -172.77 -0.51 -9.96 16 17 C 0.54 8.70 7.48 -10.98 -0.08 8.62 16 18 O -0.54 -10.79 15.66 5.56 0.09 -10.70 16 19 C -0.14 -1.67 5.12 -91.77 -0.47 -2.14 16 20 H 0.12 1.21 6.57 -51.93 -0.34 0.87 16 21 C -0.10 -1.01 10.24 -26.72 -0.27 -1.29 16 22 C -0.20 -2.31 5.05 -154.51 -0.78 -3.09 16 23 C -0.13 -1.20 10.53 -26.74 -0.28 -1.48 16 24 C -0.11 -1.29 10.16 -26.73 -0.27 -1.56 16 25 C 0.10 1.84 5.79 -3.71 -0.02 1.82 16 26 H 0.03 0.78 7.41 -51.93 -0.38 0.39 16 27 H 0.00 -0.05 6.36 -51.93 -0.33 -0.38 16 28 H 0.04 1.18 7.21 -51.93 -0.37 0.80 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.01 7.71 -51.92 -0.40 0.61 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.74 5.51 -51.93 -0.29 0.45 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.18 6.50 -51.93 -0.34 0.84 16 43 H 0.09 1.93 7.00 -51.93 -0.36 1.56 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -32.01 340.07 -9.67 -41.68 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.00 Total: -0.33 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.44 Total: -1.64 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.41 Total: -51.35 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.01 -9.67 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027590451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.334 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds