Wall clock time and date at job start Fri Apr 10 2020 17:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 119.99740 * 2 1 4 4 H 1.07996 * 119.99930 * 201.99128 * 3 2 1 5 5 C 1.38814 * 119.99951 * 21.99494 * 3 2 1 6 6 N 1.31618 * 120.00030 * 12.70807 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 192.70896 * 5 3 2 8 8 H 1.48503 * 109.46877 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47142 * 119.99578 * 7 5 3 10 10 H 1.48505 * 109.47145 * 239.99740 * 7 5 3 11 11 C 1.46502 * 120.00553 * 179.97438 * 2 1 3 12 12 H 1.08990 * 109.49788 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49370 * 300.16765 * 11 2 1 14 14 C 1.53044 * 109.53593 * 181.31218 * 13 11 2 15 15 C 1.53197 * 109.31165 * 298.63729 * 14 13 11 16 16 N 1.46917 * 108.77685 * 54.63168 * 15 14 13 17 17 C 1.34778 * 120.62914 * 126.41321 * 16 15 14 18 18 O 1.21283 * 120.00101 * 179.97438 * 17 16 15 19 19 C 1.50704 * 120.00245 * 359.97438 * 17 16 15 20 20 H 1.09000 * 115.54702 * 325.72061 * 19 17 16 21 21 C 1.53000 * 117.50153 * 111.38782 * 19 17 16 22 22 C 1.52990 * 117.50164 * 180.02562 * 19 17 16 23 23 C 1.52991 * 138.58963 * 121.61520 * 22 19 17 24 24 C 1.53000 * 60.00235 * 229.11167 * 23 22 19 25 25 C 1.46928 * 118.74329 * 306.39258 * 16 15 14 26 26 H 1.08999 * 109.47253 * 274.32417 * 1 2 3 27 27 H 1.09001 * 109.46636 * 154.32847 * 1 2 3 28 28 H 1.09004 * 109.47064 * 34.33164 * 1 2 3 29 29 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 30 30 H 1.09000 * 109.46274 * 301.33221 * 13 11 2 31 31 H 1.09007 * 109.46486 * 61.29514 * 13 11 2 32 32 H 1.08997 * 109.50080 * 178.68072 * 14 13 11 33 33 H 1.08995 * 109.49753 * 58.58601 * 14 13 11 34 34 H 1.08996 * 109.58267 * 294.84241 * 15 14 13 35 35 H 1.09004 * 109.70025 * 174.49579 * 15 14 13 36 36 H 1.08992 * 117.49908 * 214.98091 * 21 19 17 37 37 H 1.09004 * 117.49555 * 359.97438 * 21 19 17 38 38 H 1.09006 * 117.49807 * 336.59681 * 23 22 19 39 39 H 1.09001 * 117.50320 * 121.61749 * 23 22 19 40 40 H 1.09005 * 117.49647 * 252.51465 * 24 23 22 41 41 H 1.08993 * 117.52099 * 107.48097 * 24 23 22 42 42 H 1.09002 * 109.58105 * 293.82136 * 25 16 15 43 43 H 1.08991 * 109.59184 * 173.39793 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1707 1.2200 -0.3502 5 6 1.5313 2.3444 0.4502 6 7 0.3916 2.2703 1.1044 7 14 2.3167 4.0082 0.1277 8 1 3.5852 3.8199 -0.6212 9 1 1.3886 4.8469 -0.6727 10 1 2.6010 4.6805 1.4209 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0699 0.0009 13 6 1.8252 -2.0729 1.2482 14 6 2.6146 -3.3840 1.2665 15 6 2.2497 -4.2122 0.0304 16 7 2.4684 -3.3929 -1.1693 17 6 3.2414 -3.8437 -2.1772 18 8 3.4138 -3.1580 -3.1626 19 6 3.8915 -5.1998 -2.0797 20 1 4.2028 -5.5011 -1.0795 21 6 3.3874 -6.2943 -3.0224 22 6 4.7575 -5.6542 -3.2563 23 6 6.1996 -6.0933 -3.5173 24 6 5.5512 -5.0295 -4.4054 25 6 1.8280 -2.0730 -1.2498 26 1 -0.3634 0.0775 1.0247 27 1 -0.3632 -0.9263 -0.4452 28 1 -0.3633 0.8487 -0.5796 29 1 -0.0407 3.0798 1.4187 30 1 2.0645 -1.4925 2.1393 31 1 0.7575 -2.2921 1.2337 32 1 2.3664 -3.9456 2.1670 33 1 3.6824 -3.1658 1.2560 34 1 1.2021 -4.5080 0.0851 35 1 2.8785 -5.1015 -0.0147 36 1 3.3673 -7.3157 -2.6426 37 1 2.5851 -6.0337 -3.7128 38 1 6.9618 -5.7632 -2.8114 39 1 6.3544 -7.0826 -3.9481 40 1 5.2794 -5.3189 -5.4206 41 1 5.8865 -3.9995 -4.2840 42 1 0.7459 -2.1943 -1.2996 43 1 2.1804 -1.5494 -2.1384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027590451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:17 Heat of formation + Delta-G solvation = 34.084174 kcal Electronic energy + Delta-G solvation = -22291.212011 eV Core-core repulsion = 19145.478854 eV Total energy + Delta-G solvation = -3145.733157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39466 -39.41568 -38.10971 -36.77195 -34.11481 -33.36983 -32.87414 -30.53205 -28.09496 -26.90348 -25.50345 -24.12958 -23.26882 -23.04043 -21.25952 -20.36853 -19.42233 -18.79524 -18.30006 -17.15601 -16.76334 -16.31773 -15.87303 -15.76346 -15.53765 -15.26670 -15.16342 -14.94940 -14.48531 -13.99868 -13.84124 -13.71239 -13.33668 -12.90507 -12.84312 -12.64704 -12.54139 -12.35605 -12.31241 -12.10675 -11.96145 -11.81019 -11.70288 -11.41737 -11.14878 -11.00371 -10.90290 -10.73554 -10.62314 -9.70254 -8.79191 -7.86823 -5.34711 1.41390 1.43266 1.47805 1.53842 1.91258 2.47475 2.75545 2.82747 3.25989 3.34228 3.57686 3.62603 3.84571 3.95307 4.05982 4.07729 4.17269 4.21966 4.34782 4.49336 4.58088 4.64945 4.71586 4.76304 4.76694 4.79201 4.83610 4.87776 4.91586 5.01358 5.03374 5.06673 5.14919 5.26148 5.28705 5.42432 5.47722 5.51584 5.61172 5.69358 6.28861 6.47783 7.11128 7.19720 7.82685 8.24941 9.15875 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.004236 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.510490 B = 6608.676349 C = 7254.095233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.611 5.611 3 C -0.267 4.267 4 H 0.060 0.940 5 C -0.047 4.047 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.273 1.273 9 H -0.288 1.288 10 H -0.287 1.287 11 C 0.168 3.832 12 H 0.041 0.959 13 C -0.122 4.122 14 C -0.123 4.123 15 C 0.106 3.894 16 N -0.603 5.603 17 C 0.529 3.471 18 O -0.590 6.590 19 C -0.145 4.145 20 H 0.155 0.845 21 C -0.079 4.079 22 C -0.227 4.227 23 C -0.100 4.100 24 C -0.140 4.140 25 C 0.113 3.887 26 H 0.009 0.991 27 H 0.030 0.970 28 H 0.013 0.987 29 H 0.249 0.751 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.143 0.857 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 -22.641 -2.975 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.334 5.334 3 C -0.397 4.397 4 H 0.078 0.922 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.794 3.206 8 H -0.198 1.198 9 H -0.215 1.215 10 H -0.213 1.213 11 C 0.060 3.940 12 H 0.059 0.941 13 C -0.162 4.162 14 C -0.162 4.162 15 C -0.015 4.015 16 N -0.335 5.335 17 C 0.319 3.681 18 O -0.470 6.470 19 C -0.166 4.166 20 H 0.172 0.828 21 C -0.116 4.116 22 C -0.228 4.228 23 C -0.136 4.136 24 C -0.177 4.177 25 C -0.012 4.012 26 H 0.027 0.973 27 H 0.048 0.952 28 H 0.032 0.968 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.141 0.859 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.494 -22.135 -3.418 23.320 hybrid contribution -0.029 2.032 -0.051 2.033 sum 6.465 -20.103 -3.469 21.400 Atomic orbital electron populations 1.20490 0.82454 0.95720 0.97687 1.44110 1.02208 1.00998 1.86072 1.19505 0.97689 0.86860 1.35690 0.92224 1.25686 0.98491 1.01480 0.98568 1.70222 1.19624 1.27403 1.40762 0.85222 0.77891 0.80180 0.77261 1.19798 1.21513 1.21332 1.20698 0.94616 0.85352 0.93295 0.94072 1.21935 1.00307 0.96398 0.97557 1.21909 0.99979 0.95263 0.99050 1.22105 1.03465 0.93825 0.82153 1.48218 1.48323 1.17706 1.19235 1.20508 0.77802 0.88085 0.81729 1.90664 1.63164 1.59904 1.33303 1.22045 1.04103 0.92223 0.98197 0.82768 1.22772 0.93329 0.97154 0.98305 1.21455 0.93720 1.07361 1.00235 1.22842 0.90331 0.99718 1.00707 1.22572 1.02163 0.97930 0.95057 1.21886 0.96899 0.83162 0.99213 0.97303 0.95211 0.96790 0.94123 0.93971 0.92235 0.87647 0.92120 0.89751 0.86152 0.83878 0.89455 0.87968 0.85862 0.88096 0.90928 0.91638 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.16 8.03 127.77 1.03 10.18 16 2 N -0.61 -31.87 2.82 -702.34 -1.98 -33.85 16 3 C -0.27 -15.49 9.60 84.03 0.81 -14.68 16 4 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 5 C -0.05 -2.71 5.10 84.86 0.43 -2.28 16 6 N -0.93 -56.07 10.64 21.65 0.23 -55.84 16 7 Si 0.97 46.83 29.57 68.60 2.03 48.86 16 8 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 9 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 11 C 0.17 7.14 2.74 45.07 0.12 7.27 16 12 H 0.04 1.90 7.86 -2.39 -0.02 1.88 16 13 C -0.12 -4.21 5.14 30.62 0.16 -4.06 16 14 C -0.12 -2.83 6.08 30.67 0.19 -2.65 16 15 C 0.11 2.12 6.35 86.37 0.55 2.66 16 16 N -0.60 -18.12 2.97 -818.91 -2.43 -20.56 16 17 C 0.53 16.71 7.48 87.66 0.66 17.37 16 18 O -0.59 -24.54 15.66 -3.04 -0.05 -24.59 16 19 C -0.15 -3.02 5.12 -11.54 -0.06 -3.08 16 20 H 0.16 2.21 6.57 -2.39 -0.02 2.20 16 21 C -0.08 -1.28 10.24 30.60 0.31 -0.97 16 22 C -0.23 -4.66 5.05 -52.18 -0.26 -4.92 16 23 C -0.10 -1.53 10.53 30.59 0.32 -1.21 16 24 C -0.14 -3.14 10.16 30.59 0.31 -2.83 16 25 C 0.11 4.37 5.79 86.36 0.50 4.87 16 26 H 0.01 0.47 7.41 -2.39 -0.02 0.46 16 27 H 0.03 1.28 6.36 -2.39 -0.02 1.26 16 28 H 0.01 0.75 7.21 -2.39 -0.02 0.73 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 2.02 7.71 -2.38 -0.02 2.00 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 35 H 0.12 1.52 5.51 -2.39 -0.01 1.51 16 36 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 2.46 6.50 -2.39 -0.02 2.45 16 43 H 0.05 2.39 7.00 -2.39 -0.02 2.37 16 Total: -1.00 -74.55 340.07 3.84 -70.71 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.98 Total: 9.58 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 5.06 Total: 5.69 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -4.18 Total: -110.24 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -74.55 3.84 -70.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027590451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.794 kcal (2) G-P(sol) polarization free energy of solvation -74.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds