Wall clock time and date at job start Fri Apr 10 2020 17:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 119.99828 * 2 1 4 4 O 1.21279 * 120.00472 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00020 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47238 * 180.02562 * 5 3 2 7 7 H 1.09000 * 110.34219 * 55.83038 * 6 5 3 8 8 C 1.51101 * 110.38539 * 293.54167 * 6 5 3 9 9 C 1.30523 * 111.10733 * 224.74889 * 8 6 5 10 10 C 1.51107 * 111.10009 * 0.02562 * 9 8 6 11 11 C 1.54629 * 110.38709 * 178.23954 * 6 5 3 12 12 C 1.46496 * 120.00628 * 179.97438 * 2 1 3 13 13 H 1.09000 * 110.64952 * 178.31252 * 12 2 1 14 14 C 1.55162 * 110.71937 * 54.97642 * 12 2 1 15 15 C 1.54910 * 101.58119 * 277.13997 * 14 12 2 16 16 N 1.47423 * 104.83460 * 322.98983 * 15 14 12 17 17 C 1.36939 * 125.64880 * 204.09313 * 16 15 14 18 18 H 1.08001 * 119.99759 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99770 * 0.04129 * 17 16 15 20 20 N 1.31616 * 120.00093 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99563 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47309 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47116 * 119.99737 * 21 19 17 24 24 H 1.48500 * 109.47041 * 239.99536 * 21 19 17 25 25 C 1.47018 * 108.70167 * 24.12686 * 16 15 14 26 26 H 1.08997 * 109.47477 * 90.00366 * 1 2 3 27 27 H 1.09004 * 109.46971 * 209.99938 * 1 2 3 28 28 H 1.08993 * 109.47768 * 330.00002 * 1 2 3 29 29 H 1.09001 * 109.46953 * 299.99667 * 5 3 2 30 30 H 1.09000 * 109.47318 * 59.99264 * 5 3 2 31 31 H 1.08006 * 124.44645 * 44.73781 * 8 6 5 32 32 H 1.07993 * 124.45198 * 180.02562 * 9 8 6 33 33 H 1.09005 * 110.38691 * 135.24517 * 10 9 8 34 34 H 1.09006 * 110.38154 * 257.50201 * 10 9 8 35 35 H 1.08995 * 111.04041 * 261.47819 * 11 6 5 36 36 H 1.09004 * 111.04010 * 25.41381 * 11 6 5 37 37 H 1.09000 * 111.00397 * 35.21458 * 14 12 2 38 38 H 1.08996 * 111.00832 * 159.06475 * 14 12 2 39 39 H 1.09003 * 110.36549 * 204.14619 * 15 14 12 40 40 H 1.09002 * 110.45887 * 81.87421 * 15 14 12 41 41 H 0.97005 * 119.99354 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.88874 * 239.52447 * 25 16 15 43 43 H 1.09004 * 109.88598 * 118.35887 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 6 2.3794 3.6353 -0.0002 7 1 3.0613 3.5503 -0.8463 8 6 3.1524 3.6678 1.2977 9 6 3.2309 4.8829 1.7678 10 6 2.5226 5.8633 0.8620 11 6 1.6282 4.9861 -0.0441 12 6 2.1976 -1.2686 0.0006 13 1 3.2727 -1.0916 -0.0295 14 6 1.7508 -2.1610 -1.1875 15 6 0.4720 -2.8226 -0.6159 16 7 0.7746 -3.0618 0.8070 17 6 0.1813 -4.0064 1.6013 18 1 0.4739 -4.1026 2.6364 19 6 -0.7961 -4.8405 1.0758 20 7 -1.1528 -4.7230 -0.1856 21 14 -1.6059 -6.1285 2.1596 22 1 -1.0323 -6.0563 3.5274 23 1 -3.0679 -5.8752 2.2214 24 1 -1.3611 -7.4785 1.5913 25 6 1.8183 -2.1177 1.2322 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 0.7583 2.5303 -0.8892 30 1 0.7588 2.5298 0.8907 31 1 3.5833 2.7994 1.7740 32 1 3.7356 5.1522 2.6838 33 1 1.9121 6.5497 1.4489 34 1 3.2455 6.4169 0.2627 35 1 1.5925 5.3812 -1.0593 36 1 0.6253 4.8899 0.3719 37 1 1.5194 -1.5568 -2.0646 38 1 2.5078 -2.9101 -1.4198 39 1 0.2727 -3.7655 -1.1251 40 1 -0.3810 -2.1512 -0.7146 41 1 -1.8360 -5.3057 -0.5526 42 1 2.6910 -2.6652 1.5879 43 1 1.4350 -1.4728 2.0231 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032903589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:23 Heat of formation + Delta-G solvation = 14.126364 kcal Electronic energy + Delta-G solvation = -22261.370958 eV Core-core repulsion = 19114.772366 eV Total energy + Delta-G solvation = -3146.598593 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13320 -38.62221 -37.20040 -34.36679 -32.34491 -31.28917 -29.23812 -28.98588 -27.98565 -26.24181 -25.40954 -24.11058 -21.01398 -20.33005 -20.15299 -18.84046 -18.33655 -17.04105 -16.90362 -16.10013 -15.62917 -15.45707 -14.90933 -14.69666 -13.82229 -13.74978 -13.43258 -12.69868 -12.50769 -12.27028 -12.21157 -11.97905 -11.91838 -11.80263 -11.71866 -11.57091 -11.34991 -11.17745 -11.08201 -10.93105 -10.84843 -10.73925 -10.27078 -10.11647 -9.87382 -9.56431 -9.31686 -8.93279 -8.68117 -8.21303 -6.87433 -5.69369 -3.11250 2.28020 2.89973 3.33008 3.37340 3.43398 3.45362 4.45570 4.47571 4.52930 4.76663 4.89704 5.16319 5.26275 5.34389 5.41967 5.43963 5.46230 5.51562 5.56801 5.59082 5.67737 5.73351 5.78222 5.84013 5.86859 5.95493 6.09466 6.19166 6.24552 6.31279 6.38370 6.55360 6.56715 6.61124 6.72291 6.88521 7.06604 7.44732 7.59949 7.77516 7.82622 8.31916 8.47704 9.18181 9.78642 10.43182 11.34140 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035458 B = 0.003625 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.487680 B = 7722.852626 C = 7832.891345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.595 5.595 3 C 0.510 3.490 4 O -0.550 6.550 5 C -0.130 4.130 6 C -0.054 4.054 7 H 0.089 0.911 8 C -0.135 4.135 9 C -0.189 4.189 10 C -0.097 4.097 11 C -0.123 4.123 12 C 0.125 3.875 13 H 0.099 0.901 14 C -0.154 4.154 15 C 0.145 3.855 16 N -0.603 5.603 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.127 3.873 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.022 0.978 41 H 0.251 0.749 42 H 0.032 0.968 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.549 17.407 -1.051 17.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.327 5.327 3 C 0.299 3.701 4 O -0.429 6.429 5 C -0.170 4.170 6 C -0.072 4.072 7 H 0.107 0.893 8 C -0.152 4.152 9 C -0.207 4.207 10 C -0.135 4.135 11 C -0.160 4.160 12 C 0.021 3.979 13 H 0.117 0.883 14 C -0.194 4.194 15 C 0.020 3.980 16 N -0.330 5.330 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.000 4.000 26 H 0.072 0.928 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.040 0.960 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.008 17.229 -1.054 17.721 hybrid contribution -0.546 -0.766 0.604 1.118 sum 3.462 16.463 -0.450 16.829 Atomic orbital electron populations 1.22088 0.79259 1.04136 1.01878 1.47846 1.07279 1.05628 1.71955 1.20640 0.88062 0.85378 0.76030 1.90645 1.13974 1.87481 1.50809 1.21731 0.99005 0.92145 1.04152 1.20827 0.95650 0.92998 0.97749 0.89341 1.23361 0.98275 0.97757 0.95854 1.23218 1.02390 0.95280 0.99814 1.21314 0.97877 0.97533 0.96731 1.22557 0.98846 0.94627 0.99973 1.22122 0.96464 0.82338 0.96946 0.88336 1.23339 1.01511 0.98248 0.96280 1.22119 0.90542 1.00671 0.84660 1.44558 1.42726 1.37687 1.08008 1.19126 1.14760 1.08304 0.92820 0.90475 1.24773 0.99412 0.99884 0.96515 1.69811 1.34046 1.41064 1.12102 0.86009 0.78955 0.81278 0.79311 1.20561 1.21768 1.21765 1.21638 0.92701 0.91418 0.94216 0.92820 0.88015 0.92195 0.88956 0.88910 0.85594 0.86214 0.91525 0.91079 0.90935 0.90895 0.92128 0.91138 0.87723 0.96050 0.93795 0.95054 0.95613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 8.34 59.84 0.50 1.55 16 2 N -0.60 -9.84 2.82 -171.84 -0.49 -10.32 16 3 C 0.51 8.00 7.44 -10.98 -0.08 7.92 16 4 O -0.55 -10.16 14.05 5.56 0.08 -10.08 16 5 C -0.13 -1.51 3.67 -27.88 -0.10 -1.61 16 6 C -0.05 -0.61 2.54 -90.72 -0.23 -0.84 16 7 H 0.09 1.11 8.01 -51.93 -0.42 0.69 16 8 C -0.13 -1.66 9.19 -35.70 -0.33 -1.99 16 9 C -0.19 -1.99 10.78 -35.69 -0.38 -2.37 16 10 C -0.10 -0.86 6.81 -26.83 -0.18 -1.04 16 11 C -0.12 -1.08 6.71 -25.02 -0.17 -1.24 16 12 C 0.12 2.33 3.58 -66.09 -0.24 2.09 16 13 H 0.10 1.86 6.99 -51.93 -0.36 1.50 16 14 C -0.15 -2.96 6.53 -24.58 -0.16 -3.12 16 15 C 0.14 3.34 5.00 -2.53 -0.01 3.33 16 16 N -0.60 -14.91 2.97 -170.07 -0.50 -15.42 16 17 C -0.22 -6.03 10.27 -15.06 -0.15 -6.18 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -25.99 10.09 55.49 0.56 -25.43 16 21 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.13 2.69 6.24 -3.06 -0.02 2.67 16 26 H 0.05 0.76 7.99 -51.93 -0.41 0.35 16 27 H 0.10 1.92 5.19 -51.93 -0.27 1.65 16 28 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 29 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 30 H 0.09 0.99 7.40 -51.93 -0.38 0.61 16 31 H 0.13 1.78 7.31 -52.48 -0.38 1.40 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.59 7.91 -51.93 -0.41 0.18 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.11 2.78 5.87 -51.93 -0.31 2.48 16 40 H 0.02 0.50 5.54 -51.93 -0.29 0.22 16 41 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.03 0.55 8.04 -51.93 -0.42 0.14 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -29.90 331.26 -8.96 -38.86 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.91 Total: 1.98 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.66 Total: -1.22 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.43 Total: -51.17 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.90 -8.96 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032903589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.984 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds