Wall clock time and date at job start Fri Apr 10 2020 17:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 119.99828 * 2 1 4 4 O 1.21279 * 120.00472 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00020 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47238 * 180.02562 * 5 3 2 7 7 H 1.09000 * 110.34219 * 55.83038 * 6 5 3 8 8 C 1.51101 * 110.38539 * 293.54167 * 6 5 3 9 9 C 1.30523 * 111.10733 * 224.74889 * 8 6 5 10 10 C 1.51107 * 111.10009 * 0.02562 * 9 8 6 11 11 C 1.54629 * 110.38709 * 178.23954 * 6 5 3 12 12 C 1.46496 * 120.00628 * 179.97438 * 2 1 3 13 13 H 1.09000 * 110.64952 * 178.31252 * 12 2 1 14 14 C 1.55162 * 110.71937 * 54.97642 * 12 2 1 15 15 C 1.54910 * 101.58119 * 277.13997 * 14 12 2 16 16 N 1.47423 * 104.83460 * 322.98983 * 15 14 12 17 17 C 1.36939 * 125.64880 * 204.09313 * 16 15 14 18 18 H 1.08001 * 119.99759 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99770 * 0.04129 * 17 16 15 20 20 N 1.31616 * 120.00093 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99563 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47309 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47116 * 119.99737 * 21 19 17 24 24 H 1.48500 * 109.47041 * 239.99536 * 21 19 17 25 25 C 1.47018 * 108.70167 * 24.12686 * 16 15 14 26 26 H 1.08997 * 109.47477 * 90.00366 * 1 2 3 27 27 H 1.09004 * 109.46971 * 209.99938 * 1 2 3 28 28 H 1.08993 * 109.47768 * 330.00002 * 1 2 3 29 29 H 1.09001 * 109.46953 * 299.99667 * 5 3 2 30 30 H 1.09000 * 109.47318 * 59.99264 * 5 3 2 31 31 H 1.08006 * 124.44645 * 44.73781 * 8 6 5 32 32 H 1.07993 * 124.45198 * 180.02562 * 9 8 6 33 33 H 1.09005 * 110.38691 * 135.24517 * 10 9 8 34 34 H 1.09006 * 110.38154 * 257.50201 * 10 9 8 35 35 H 1.08995 * 111.04041 * 261.47819 * 11 6 5 36 36 H 1.09004 * 111.04010 * 25.41381 * 11 6 5 37 37 H 1.09000 * 111.00397 * 35.21458 * 14 12 2 38 38 H 1.08996 * 111.00832 * 159.06475 * 14 12 2 39 39 H 1.09003 * 110.36549 * 204.14619 * 15 14 12 40 40 H 1.09002 * 110.45887 * 81.87421 * 15 14 12 41 41 H 0.97005 * 119.99354 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.88874 * 239.52447 * 25 16 15 43 43 H 1.09004 * 109.88598 * 118.35887 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 6 2.3794 3.6353 -0.0002 7 1 3.0613 3.5503 -0.8463 8 6 3.1524 3.6678 1.2977 9 6 3.2309 4.8829 1.7678 10 6 2.5226 5.8633 0.8620 11 6 1.6282 4.9861 -0.0441 12 6 2.1976 -1.2686 0.0006 13 1 3.2727 -1.0916 -0.0295 14 6 1.7508 -2.1610 -1.1875 15 6 0.4720 -2.8226 -0.6159 16 7 0.7746 -3.0618 0.8070 17 6 0.1813 -4.0064 1.6013 18 1 0.4739 -4.1026 2.6364 19 6 -0.7961 -4.8405 1.0758 20 7 -1.1528 -4.7230 -0.1856 21 14 -1.6059 -6.1285 2.1596 22 1 -1.0323 -6.0563 3.5274 23 1 -3.0679 -5.8752 2.2214 24 1 -1.3611 -7.4785 1.5913 25 6 1.8183 -2.1177 1.2322 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 0.7583 2.5303 -0.8892 30 1 0.7588 2.5298 0.8907 31 1 3.5833 2.7994 1.7740 32 1 3.7356 5.1522 2.6838 33 1 1.9121 6.5497 1.4489 34 1 3.2455 6.4169 0.2627 35 1 1.5925 5.3812 -1.0593 36 1 0.6253 4.8899 0.3719 37 1 1.5194 -1.5568 -2.0646 38 1 2.5078 -2.9101 -1.4198 39 1 0.2727 -3.7655 -1.1251 40 1 -0.3810 -2.1512 -0.7146 41 1 -1.8360 -5.3057 -0.5526 42 1 2.6910 -2.6652 1.5879 43 1 1.4350 -1.4728 2.0231 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032903589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:22 Heat of formation + Delta-G solvation = -1.920688 kcal Electronic energy + Delta-G solvation = -22262.066811 eV Core-core repulsion = 19114.772366 eV Total energy + Delta-G solvation = -3147.294445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38401 -39.72373 -38.59869 -35.93338 -34.07211 -32.43162 -30.99102 -29.79042 -29.55110 -27.59986 -26.73205 -25.71608 -22.24302 -22.01808 -21.24094 -20.02708 -19.41410 -18.94209 -18.21530 -17.25198 -16.80984 -16.73326 -16.46876 -15.88290 -15.61405 -15.18996 -14.62731 -14.16484 -13.90078 -13.68969 -13.56184 -13.36461 -13.26930 -12.95035 -12.81680 -12.78491 -12.72876 -12.63378 -12.38296 -12.05061 -11.99858 -11.98100 -11.94468 -11.77591 -11.64974 -11.40862 -10.73705 -10.59720 -9.76001 -9.60215 -8.87445 -7.76469 -5.20528 1.41717 1.47925 1.48905 1.58743 1.67905 2.05745 2.49980 3.33842 3.51168 3.70205 3.76175 3.87113 3.92681 4.01925 4.06609 4.28592 4.30333 4.38851 4.53848 4.60293 4.64013 4.69073 4.70323 4.71531 4.79365 4.89002 4.94702 5.00679 5.02420 5.03504 5.13497 5.15223 5.32710 5.45762 5.46456 5.58112 5.67609 5.73212 5.83461 6.02069 6.32005 6.51701 7.12188 7.22595 7.77558 8.41611 9.24744 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035458 B = 0.003625 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.487680 B = 7722.852626 C = 7832.891345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.508 3.492 4 O -0.582 6.582 5 C -0.122 4.122 6 C -0.053 4.053 7 H 0.071 0.929 8 C -0.168 4.168 9 C -0.175 4.175 10 C -0.099 4.099 11 C -0.115 4.115 12 C 0.137 3.863 13 H 0.098 0.902 14 C -0.139 4.139 15 C 0.152 3.848 16 N -0.619 5.619 17 C -0.238 4.238 18 H 0.075 0.925 19 C -0.060 4.060 20 N -0.943 5.943 21 Si 0.977 3.023 22 H -0.271 1.271 23 H -0.290 1.290 24 H -0.293 1.293 25 C 0.129 3.871 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.018 0.982 41 H 0.247 0.753 42 H 0.027 0.973 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 19.603 -1.046 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.331 5.331 3 C 0.298 3.702 4 O -0.462 6.462 5 C -0.161 4.161 6 C -0.071 4.071 7 H 0.089 0.911 8 C -0.186 4.186 9 C -0.193 4.193 10 C -0.136 4.136 11 C -0.152 4.152 12 C 0.032 3.968 13 H 0.116 0.884 14 C -0.179 4.179 15 C 0.027 3.973 16 N -0.345 5.345 17 C -0.367 4.367 18 H 0.093 0.907 19 C -0.253 4.253 20 N -0.593 5.593 21 Si 0.806 3.194 22 H -0.196 1.196 23 H -0.217 1.217 24 H -0.220 1.220 25 C 0.003 3.997 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.293 19.452 -1.042 19.756 hybrid contribution -0.256 -1.405 0.652 1.570 sum 3.037 18.046 -0.391 18.304 Atomic orbital electron populations 1.22060 0.78239 1.03908 1.02596 1.47908 1.07813 1.05109 1.72252 1.21409 0.87900 0.86193 0.74673 1.90635 1.15655 1.87921 1.52023 1.21793 0.98952 0.89455 1.05949 1.20820 0.95495 0.94426 0.96390 0.91071 1.23285 1.00476 0.97637 0.97245 1.23522 1.00820 0.95099 0.99853 1.21390 0.98179 0.97339 0.96643 1.22568 0.98969 0.92637 1.01059 1.21825 0.96647 0.83138 0.95185 0.88442 1.23182 0.99423 0.98278 0.96973 1.21905 0.92342 0.99120 0.83901 1.44748 1.43253 1.37916 1.08618 1.19410 1.15087 1.09011 0.93214 0.90663 1.25525 1.00155 1.01779 0.97797 1.70038 1.34275 1.41646 1.13322 0.85031 0.77771 0.78502 0.78106 1.19599 1.21676 1.22016 1.21681 0.91557 0.91119 0.95379 0.91607 0.91812 0.88763 0.86380 0.87433 0.88434 0.85398 0.89773 0.90221 0.89363 0.89616 0.90121 0.91148 0.91275 0.96373 0.94272 0.95471 0.95920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.13 8.34 127.77 1.07 3.20 16 2 N -0.60 -19.11 2.82 -815.97 -2.30 -21.42 16 3 C 0.51 15.28 7.44 87.66 0.65 15.93 16 4 O -0.58 -21.42 14.05 -3.02 -0.04 -21.46 16 5 C -0.12 -2.51 3.67 29.85 0.11 -2.40 16 6 C -0.05 -1.09 2.54 -10.86 -0.03 -1.12 16 7 H 0.07 1.70 8.01 -2.39 -0.02 1.68 16 8 C -0.17 -4.04 9.19 26.26 0.24 -3.79 16 9 C -0.18 -3.36 10.78 26.27 0.28 -3.08 16 10 C -0.10 -1.41 6.81 30.53 0.21 -1.21 16 11 C -0.12 -1.61 6.71 31.70 0.21 -1.40 16 12 C 0.14 5.07 3.58 46.18 0.17 5.23 16 13 H 0.10 3.68 6.99 -2.39 -0.02 3.66 16 14 C -0.14 -5.28 6.53 31.99 0.21 -5.08 16 15 C 0.15 7.13 5.00 86.86 0.43 7.56 16 16 N -0.62 -31.16 2.97 -691.98 -2.05 -33.21 16 17 C -0.24 -13.15 10.27 84.03 0.86 -12.29 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.06 -3.29 5.49 84.86 0.47 -2.83 16 20 N -0.94 -54.21 10.09 21.65 0.22 -53.99 16 21 Si 0.98 44.90 29.55 68.60 2.03 46.92 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 C 0.13 5.53 6.24 86.73 0.54 6.07 16 26 H 0.07 1.73 7.99 -2.39 -0.02 1.71 16 27 H 0.06 2.38 5.19 -2.38 -0.01 2.37 16 28 H 0.09 2.02 6.44 -2.39 -0.02 2.01 16 29 H 0.12 1.86 8.11 -2.39 -0.02 1.84 16 30 H 0.11 1.94 7.40 -2.39 -0.02 1.92 16 31 H 0.10 2.86 7.31 -2.91 -0.02 2.84 16 32 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 33 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.01 7.91 -2.38 -0.02 0.99 16 37 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.07 3.78 5.87 -2.39 -0.01 3.77 16 40 H 0.02 0.87 5.54 -2.39 -0.01 0.86 16 41 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.02 0.99 8.04 -2.38 -0.02 0.97 16 Total: -1.00 -65.85 331.26 4.25 -61.60 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.98 Total: 16.76 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 5.42 Total: 4.80 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -4.14 Total: -108.62 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.04 Total: -21.46 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.85 4.25 -61.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032903589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.679 kcal (2) G-P(sol) polarization free energy of solvation -65.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds