Wall clock time and date at job start Fri Apr 10 2020 17:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00271 * 2 1 4 4 O 1.21283 * 119.99276 * 5.70405 * 3 2 1 5 5 C 1.50693 * 120.00398 * 185.70493 * 3 2 1 6 6 H 1.08995 * 109.64314 * 50.06337 * 5 3 2 7 7 C 1.53025 * 109.64094 * 289.64312 * 5 3 2 8 8 C 1.50061 * 110.14956 * 190.87740 * 7 5 3 9 9 C 1.29446 * 124.07576 * 17.13598 * 8 7 5 10 10 C 1.50066 * 124.07271 * 359.50331 * 9 8 7 11 11 C 1.53033 * 110.14156 * 17.17486 * 10 9 8 12 12 C 1.46500 * 120.00151 * 179.97438 * 2 1 3 13 13 H 1.09002 * 110.89034 * 184.69488 * 12 2 1 14 14 C 1.55162 * 111.00195 * 60.81837 * 12 2 1 15 15 C 1.54324 * 102.94385 * 206.38633 * 14 12 2 16 16 N 1.47027 * 107.26999 * 22.18969 * 15 14 12 17 17 C 1.36931 * 125.64799 * 181.02218 * 16 15 14 18 18 H 1.08007 * 119.99996 * 175.03828 * 17 16 15 19 19 C 1.38812 * 120.00324 * 355.04181 * 17 16 15 20 20 N 1.31614 * 119.99957 * 159.03996 * 19 17 16 21 21 Si 1.86807 * 119.99682 * 339.03649 * 19 17 16 22 22 H 1.48498 * 109.46718 * 185.64905 * 21 19 17 23 23 H 1.48500 * 109.46722 * 65.64850 * 21 19 17 24 24 H 1.48497 * 109.46989 * 305.65043 * 21 19 17 25 25 C 1.47425 * 108.70251 * 1.29023 * 16 15 14 26 26 H 1.08994 * 109.47626 * 275.15370 * 1 2 3 27 27 H 1.09005 * 109.47271 * 35.15434 * 1 2 3 28 28 H 1.08999 * 109.46954 * 155.15047 * 1 2 3 29 29 H 1.08999 * 109.36155 * 311.08981 * 7 5 3 30 30 H 1.09001 * 109.35732 * 70.67002 * 7 5 3 31 31 H 1.08000 * 117.96634 * 197.10908 * 8 7 5 32 32 H 1.07993 * 117.96502 * 179.53190 * 9 8 7 33 33 H 1.09001 * 109.35935 * 137.36156 * 10 9 8 34 34 H 1.09001 * 109.35839 * 257.08329 * 10 9 8 35 35 H 1.09004 * 109.63794 * 190.86319 * 11 10 9 36 36 H 1.08994 * 109.66253 * 70.21614 * 11 10 9 37 37 H 1.08999 * 110.72041 * 88.01946 * 14 12 2 38 38 H 1.09004 * 110.71894 * 324.74631 * 14 12 2 39 39 H 1.08998 * 109.88192 * 262.77593 * 15 14 12 40 40 H 1.08991 * 109.88461 * 141.60519 * 15 14 12 41 41 H 0.96994 * 120.00511 * 5.02023 * 20 19 17 42 42 H 1.09003 * 110.37056 * 94.47789 * 25 16 15 43 43 H 1.08999 * 110.36978 * 216.80525 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5369 2.2149 0.1044 5 6 3.6403 1.1704 -0.1297 6 1 3.9361 0.5522 -0.9772 7 6 4.2685 0.6202 1.1525 8 6 5.7497 0.8607 1.1469 9 6 6.3439 1.7084 0.3698 10 6 5.6357 2.5615 -0.6415 11 6 4.1370 2.6071 -0.3355 12 6 2.1975 -1.2687 0.0006 13 1 3.2708 -1.0978 0.0838 14 6 1.8639 -2.1040 -1.2637 15 6 2.1171 -3.5532 -0.7973 16 7 2.0196 -3.5629 0.6697 17 6 2.2002 -4.6560 1.4742 18 1 2.1862 -4.5442 2.5484 19 6 2.4013 -5.9080 0.9094 20 7 2.9722 -6.8631 1.6124 21 14 1.8616 -6.2371 -0.8485 22 1 2.0605 -7.6740 -1.1664 23 1 2.6702 -5.4079 -1.7779 24 1 0.4254 -5.8911 -0.9983 25 6 1.6889 -2.2021 1.1305 26 1 -0.3634 0.0923 1.0234 27 1 -0.3634 0.8403 -0.5917 28 1 -0.3633 -0.9325 -0.4319 29 1 3.8249 1.1181 2.0148 30 1 4.0766 -0.4508 1.2182 31 1 6.3579 0.2914 1.8342 32 1 7.4159 1.8076 0.4541 33 1 6.0417 3.5726 -0.6091 34 1 5.7870 2.1431 -1.6366 35 1 3.6060 3.0620 -1.1717 36 1 3.9653 3.1875 0.5710 37 1 2.5296 -1.8416 -2.0860 38 1 0.8214 -1.9682 -1.5517 39 1 3.1127 -3.8730 -1.1048 40 1 1.3644 -4.2165 -1.2232 41 1 3.1861 -6.7158 2.5469 42 1 0.6115 -2.0958 1.2573 43 1 2.2053 -1.9820 2.0648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032904746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:30 Heat of formation + Delta-G solvation = -3.518416 kcal Electronic energy + Delta-G solvation = -22818.324167 eV Core-core repulsion = 19670.960439 eV Total energy + Delta-G solvation = -3147.363728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69918 -39.54224 -38.58389 -36.34151 -34.24486 -32.51662 -31.76929 -31.24417 -29.73896 -28.19262 -25.85416 -24.66726 -23.59031 -22.71977 -22.09953 -20.10411 -19.54779 -18.92547 -18.43522 -17.53668 -16.82174 -16.65269 -16.31536 -15.97882 -15.49428 -15.20223 -14.77928 -14.50034 -14.37066 -14.31117 -14.05107 -13.96683 -13.67687 -13.24302 -13.20098 -13.07762 -13.03163 -12.89253 -12.45958 -12.24171 -11.97483 -11.78516 -11.65760 -11.47620 -11.32729 -10.99908 -10.70791 -10.63710 -9.87901 -9.73938 -9.14784 -8.62844 -5.43536 1.38876 1.43087 1.49718 1.54061 1.73609 1.88620 2.56344 3.08564 3.25733 3.43650 3.66119 3.68065 3.72910 3.79758 3.94715 4.07947 4.25948 4.28150 4.37438 4.40608 4.42629 4.44245 4.56679 4.61827 4.67332 4.69700 4.79079 4.85243 4.86496 4.91417 4.99746 5.05594 5.10942 5.18169 5.24973 5.32029 5.42452 5.54458 5.75074 6.04487 6.09409 6.30109 6.83180 7.05735 7.45074 8.08769 8.88625 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020908 B = 0.005264 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.866887 B = 5318.352763 C = 5979.235270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.599 5.599 3 C 0.520 3.480 4 O -0.574 6.574 5 C -0.104 4.104 6 H 0.112 0.888 7 C -0.087 4.087 8 C -0.168 4.168 9 C -0.150 4.150 10 C -0.089 4.089 11 C -0.094 4.094 12 C 0.125 3.875 13 H 0.124 0.876 14 C -0.129 4.129 15 C 0.103 3.897 16 N -0.628 5.628 17 C -0.315 4.315 18 H 0.045 0.955 19 C -0.078 4.078 20 N -0.961 5.961 21 Si 1.104 2.896 22 H -0.315 1.315 23 H -0.238 1.238 24 H -0.287 1.287 25 C 0.127 3.873 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.027 0.973 41 H 0.246 0.754 42 H 0.033 0.967 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 18.949 -8.408 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C 0.310 3.690 4 O -0.453 6.453 5 C -0.125 4.125 6 H 0.130 0.870 7 C -0.124 4.124 8 C -0.186 4.186 9 C -0.168 4.168 10 C -0.126 4.126 11 C -0.132 4.132 12 C 0.020 3.980 13 H 0.142 0.858 14 C -0.168 4.168 15 C -0.021 4.021 16 N -0.356 5.356 17 C -0.444 4.444 18 H 0.063 0.937 19 C -0.271 4.271 20 N -0.605 5.605 21 Si 0.931 3.069 22 H -0.244 1.244 23 H -0.163 1.163 24 H -0.215 1.215 25 C 0.001 3.999 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.763 18.335 -9.469 20.820 hybrid contribution -0.323 0.383 2.301 2.355 sum 2.440 18.718 -7.168 20.192 Atomic orbital electron populations 1.21682 0.78899 1.03370 1.02037 1.47821 1.07385 1.05419 1.72367 1.21031 0.90778 0.82448 0.74741 1.90651 1.71264 1.32197 1.51206 1.21448 0.89467 1.00832 1.00802 0.86979 1.20571 0.94337 1.01289 0.96211 1.21992 0.94999 1.00297 1.01330 1.22290 1.00563 0.96789 0.97169 1.20537 0.92972 1.00469 0.98609 1.21388 0.96197 0.93372 1.02273 1.22624 0.97774 0.82058 0.95499 0.85831 1.22982 1.03899 0.92170 0.97747 1.22139 0.98793 0.97216 0.83951 1.44759 1.83576 1.05173 1.02071 1.19980 1.47265 0.87531 0.89614 0.93690 1.27056 0.98162 0.91704 1.10203 1.71043 1.42065 1.38100 1.09298 0.83506 0.76812 0.74051 0.72494 1.24410 1.16263 1.21484 1.21935 0.97784 0.84199 0.96029 0.93039 0.90703 0.89716 0.91399 0.90389 0.87250 0.86197 0.89113 0.89358 0.91095 0.92411 0.87491 0.89385 0.93684 0.95556 0.94422 0.94947 0.94428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.98 8.90 127.77 1.14 3.11 16 2 N -0.60 -15.59 2.91 -814.40 -2.37 -17.96 16 3 C 0.52 14.07 6.95 87.65 0.61 14.68 16 4 O -0.57 -18.86 15.76 -3.04 -0.05 -18.90 16 5 C -0.10 -2.28 1.72 -11.40 -0.02 -2.29 16 6 H 0.11 2.14 7.62 -2.39 -0.02 2.12 16 7 C -0.09 -1.97 5.01 29.66 0.15 -1.82 16 8 C -0.17 -3.37 9.80 27.03 0.27 -3.10 16 9 C -0.15 -2.52 9.80 27.03 0.27 -2.26 16 10 C -0.09 -1.33 6.12 29.66 0.18 -1.14 16 11 C -0.09 -1.86 4.63 30.74 0.14 -1.72 16 12 C 0.13 3.48 2.74 46.46 0.13 3.60 16 13 H 0.12 3.25 3.92 -2.39 -0.01 3.24 16 14 C -0.13 -3.47 6.50 31.78 0.21 -3.26 16 15 C 0.10 3.92 4.57 86.73 0.40 4.32 16 16 N -0.63 -28.66 3.35 -691.55 -2.31 -30.98 16 17 C -0.32 -17.84 10.52 84.03 0.88 -16.95 16 18 H 0.05 2.77 8.06 -2.91 -0.02 2.75 16 19 C -0.08 -4.56 5.48 84.86 0.47 -4.09 16 20 N -0.96 -61.11 13.70 21.65 0.30 -60.82 16 21 Si 1.10 51.59 24.59 68.60 1.69 53.28 16 22 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 23 H -0.24 -9.43 5.24 99.48 0.52 -8.91 16 24 H -0.29 -12.73 6.98 99.48 0.69 -12.04 16 25 C 0.13 4.66 6.78 86.93 0.59 5.25 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.74 7.67 -2.38 -0.02 1.72 16 28 H 0.08 1.87 6.39 -2.39 -0.02 1.85 16 29 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 30 H 0.08 1.94 5.47 -2.39 -0.01 1.92 16 31 H 0.11 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.12 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.41 8.06 -2.38 -0.02 1.39 16 36 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 37 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.09 2.13 6.51 -2.38 -0.02 2.12 16 39 H 0.05 1.77 6.62 -2.39 -0.02 1.76 16 40 H 0.03 1.05 4.24 -2.39 -0.01 1.04 16 41 H 0.25 15.80 8.73 -92.71 -0.81 14.99 16 42 H 0.03 1.19 6.91 -2.39 -0.02 1.17 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -70.32 322.40 3.40 -66.92 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.76 Total: 14.14 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 5.40 Total: -5.69 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -4.39 Total: -109.75 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.90 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.69 Total: 53.28 kcal Total: -70.32 3.40 -66.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032904746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.401 kcal (2) G-P(sol) polarization free energy of solvation -70.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds