Wall clock time and date at job start Fri Apr 10 2020 17:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99960 * 2 1 4 4 O 1.21277 * 120.00009 * 3.92305 * 3 2 1 5 5 C 1.50696 * 119.99840 * 183.91858 * 3 2 1 6 6 H 1.08998 * 110.67809 * 313.35181 * 5 3 2 7 7 C 1.54895 * 110.75390 * 76.78861 * 5 3 2 8 8 C 1.54266 * 104.19368 * 156.25484 * 7 5 3 9 9 H 1.09004 * 117.76141 * 116.75152 * 8 7 5 10 10 C 1.55469 * 118.30361 * 272.79861 * 8 7 5 11 11 C 1.53007 * 59.83756 * 93.29781 * 10 8 7 12 12 H 1.08996 * 119.29360 * 111.70689 * 11 10 8 13 13 C 1.54260 * 118.19963 * 265.85608 * 11 10 8 14 14 C 1.46495 * 119.99801 * 180.02562 * 2 1 3 15 15 H 1.09011 * 110.88665 * 180.55260 * 14 2 1 16 16 C 1.55157 * 111.00665 * 304.42732 * 14 2 1 17 17 C 1.54327 * 102.94450 * 153.57852 * 16 14 2 18 18 N 1.47022 * 107.26749 * 337.81002 * 17 16 14 19 19 C 1.36942 * 125.64377 * 178.96030 * 18 17 16 20 20 H 1.08002 * 119.99738 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00223 * 359.97438 * 19 18 17 22 22 N 1.31624 * 119.99882 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99930 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47209 * 89.99909 * 23 21 19 25 25 H 1.48503 * 109.46711 * 209.99795 * 23 21 19 26 26 H 1.48496 * 109.47250 * 329.99405 * 23 21 19 27 27 C 1.47416 * 108.70841 * 358.93977 * 18 17 16 28 28 H 1.08997 * 109.47407 * 85.92237 * 1 2 3 29 29 H 1.09006 * 109.47019 * 325.92044 * 1 2 3 30 30 H 1.09004 * 109.47058 * 205.92417 * 1 2 3 31 31 H 1.09004 * 110.48707 * 274.93567 * 7 5 3 32 32 H 1.09000 * 110.48754 * 37.57486 * 7 5 3 33 33 H 1.09001 * 118.05746 * 346.16389 * 10 8 7 34 34 H 1.08993 * 117.18562 * 200.82455 * 10 8 7 35 35 H 1.09012 * 110.48690 * 330.31992 * 13 11 10 36 36 H 1.08994 * 110.48652 * 207.68043 * 13 11 10 37 37 H 1.08998 * 110.72384 * 271.94696 * 16 14 2 38 38 H 1.09004 * 110.71538 * 35.04126 * 16 14 2 39 39 H 1.08996 * 109.88291 * 97.22617 * 17 16 14 40 40 H 1.09000 * 109.88130 * 218.23718 * 17 16 14 41 41 H 0.96996 * 119.99874 * 179.97438 * 22 21 19 42 42 H 1.09002 * 110.36973 * 265.29135 * 27 18 17 43 43 H 1.08993 * 110.37094 * 142.96400 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5346 2.2163 0.0719 5 6 3.6432 1.1687 -0.0892 6 1 4.0706 0.4441 0.6039 7 6 4.1073 0.8866 -1.5398 8 6 5.5191 1.5043 -1.6121 9 1 6.3582 0.8331 -1.7955 10 6 5.6476 3.0076 -1.9872 11 6 5.5829 2.5845 -0.5182 12 1 6.4655 2.7031 0.1103 13 6 4.2077 2.5856 0.1808 14 6 2.1974 -1.2687 -0.0006 15 1 3.2738 -1.0961 0.0093 16 6 1.7663 -2.1604 1.1938 17 6 2.0573 -3.5872 0.6827 18 7 2.0758 -3.5293 -0.7863 19 6 2.3209 -4.5848 -1.6235 20 1 2.3116 -4.4388 -2.6936 21 6 2.5814 -5.8425 -1.0969 22 7 2.5933 -6.0203 0.2072 23 14 2.9166 -7.2821 -2.2390 24 1 4.3735 -7.3681 -2.5128 25 1 2.4584 -8.5403 -1.5969 26 1 2.1840 -7.0825 -3.5152 27 6 1.7862 -2.1469 -1.2086 28 1 -0.3634 0.0731 -1.0250 29 1 -0.3633 0.8512 0.5759 30 1 -0.3633 -0.9243 0.4493 31 1 4.1506 -0.1868 -1.7246 32 1 3.4419 1.3711 -2.2543 33 1 4.7742 3.5083 -2.4050 34 1 6.6104 3.3444 -2.3713 35 1 3.5584 3.3445 -0.2559 36 1 4.3242 2.7521 1.2516 37 1 2.3647 -1.9376 2.0771 38 1 0.7049 -2.0330 1.4066 39 1 3.0259 -3.9231 1.0526 40 1 1.2756 -4.2681 1.0194 41 1 2.7750 -6.8992 0.5752 42 1 0.7231 -2.0292 -1.4187 43 1 2.3782 -1.8863 -2.0859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033344617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:56 Heat of formation + Delta-G solvation = 4.749502 kcal Electronic energy + Delta-G solvation = -22620.183908 eV Core-core repulsion = 19473.178704 eV Total energy + Delta-G solvation = -3147.005204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65947 -39.75563 -38.89787 -36.18066 -33.85742 -32.97406 -31.02121 -29.39480 -29.00457 -28.19811 -26.40567 -24.32464 -22.32352 -22.03440 -21.63174 -20.62319 -19.63483 -18.86601 -18.48288 -17.26195 -16.85434 -16.67105 -16.28030 -15.95142 -15.59372 -14.67634 -14.41063 -14.35186 -14.17163 -14.09790 -13.91958 -13.65933 -13.55716 -12.97800 -12.89101 -12.73676 -12.54692 -12.34736 -12.26659 -12.14973 -12.02408 -12.00505 -11.98166 -11.76572 -11.52797 -10.90939 -10.82209 -10.69442 -10.51008 -9.70641 -8.88782 -7.83752 -5.19698 1.48960 1.49876 1.50917 1.58568 1.92279 2.51862 2.68736 3.25259 3.35837 3.65816 3.70762 3.78234 3.82137 3.92894 3.97786 4.10550 4.16471 4.28407 4.41957 4.46390 4.48434 4.56450 4.60934 4.63377 4.64817 4.74368 4.82681 4.88801 4.92936 4.99022 5.05517 5.12368 5.18738 5.20495 5.33054 5.40225 5.46249 5.50793 5.64128 5.77156 6.19159 6.35641 7.08789 7.11480 7.77241 8.40252 9.26199 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.004782 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.133705 B = 5853.859216 C = 6685.207566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.597 5.597 3 C 0.523 3.477 4 O -0.576 6.576 5 C -0.113 4.113 6 H 0.111 0.889 7 C -0.080 4.080 8 C -0.173 4.173 9 H 0.123 0.877 10 C -0.149 4.149 11 C -0.160 4.160 12 H 0.126 0.874 13 C -0.077 4.077 14 C 0.135 3.865 15 H 0.113 0.887 16 C -0.141 4.141 17 C 0.188 3.812 18 N -0.622 5.622 19 C -0.241 4.241 20 H 0.082 0.918 21 C -0.060 4.060 22 N -0.949 5.949 23 Si 0.975 3.025 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.271 1.271 27 C 0.129 3.871 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.019 0.981 40 H 0.009 0.991 41 H 0.247 0.753 42 H 0.026 0.974 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 15.489 -0.418 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.328 5.328 3 C 0.312 3.688 4 O -0.457 6.457 5 C -0.134 4.134 6 H 0.129 0.871 7 C -0.118 4.118 8 C -0.191 4.191 9 H 0.141 0.859 10 C -0.186 4.186 11 C -0.178 4.178 12 H 0.144 0.856 13 C -0.115 4.115 14 C 0.031 3.969 15 H 0.131 0.869 16 C -0.180 4.180 17 C 0.063 3.937 18 N -0.349 5.349 19 C -0.370 4.370 20 H 0.100 0.900 21 C -0.254 4.254 22 N -0.598 5.598 23 Si 0.804 3.196 24 H -0.212 1.212 25 H -0.223 1.223 26 H -0.196 1.196 27 C 0.003 3.997 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.038 0.962 40 H 0.028 0.972 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.865 15.815 -0.364 16.285 hybrid contribution -0.132 -1.362 -0.358 1.414 sum 3.733 14.454 -0.722 14.945 Atomic orbital electron populations 1.21681 0.79024 1.03212 1.02162 1.47838 1.07394 1.05552 1.72003 1.20870 0.90741 0.82504 0.74652 1.90631 1.71230 1.31999 1.51809 1.22554 0.90061 1.00773 1.00042 0.87072 1.21836 0.95235 1.01339 0.93420 1.23608 0.97615 0.91466 1.06373 0.85861 1.23532 1.03678 0.94969 0.96375 1.23285 0.98530 1.04654 0.91334 0.85584 1.21789 0.94337 0.94209 1.01127 1.22337 0.96970 0.81852 0.95766 0.86930 1.23131 1.02104 0.94972 0.97805 1.20878 0.98126 0.91766 0.82973 1.44620 1.83233 1.04485 1.02520 1.19413 1.40428 0.87509 0.89657 0.89971 1.25576 1.02393 1.00012 0.97387 1.70157 1.56609 1.22131 1.10910 0.85130 0.77792 0.78654 0.78065 1.21178 1.22269 1.19558 1.21886 0.97858 0.84275 0.95723 0.92473 0.90869 0.90119 0.90515 0.92011 0.89494 0.86492 0.91572 0.90268 0.89638 0.90612 0.96241 0.97243 0.94364 0.95611 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 9.16 127.77 1.17 3.34 16 2 N -0.60 -17.20 2.91 -814.81 -2.37 -19.57 16 3 C 0.52 15.36 6.95 87.66 0.61 15.97 16 4 O -0.58 -20.08 15.31 -3.02 -0.05 -20.12 16 5 C -0.11 -2.72 2.23 -10.25 -0.02 -2.75 16 6 H 0.11 2.49 6.90 -2.39 -0.02 2.48 16 7 C -0.08 -1.86 5.76 31.67 0.18 -1.68 16 8 C -0.17 -3.34 7.04 -9.22 -0.06 -3.41 16 9 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 10 C -0.15 -2.53 10.21 31.45 0.32 -2.21 16 11 C -0.16 -2.89 6.85 -10.07 -0.07 -2.96 16 12 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 13 C -0.08 -1.68 5.79 31.67 0.18 -1.50 16 14 C 0.14 4.23 3.07 46.39 0.14 4.37 16 15 H 0.11 3.32 4.95 -2.38 -0.01 3.31 16 16 C -0.14 -4.76 6.49 31.78 0.21 -4.55 16 17 C 0.19 8.72 5.37 86.73 0.47 9.19 16 18 N -0.62 -30.16 3.39 -692.00 -2.35 -32.51 16 19 C -0.24 -12.98 10.28 84.03 0.86 -12.11 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 21 C -0.06 -3.32 5.49 84.86 0.47 -2.86 16 22 N -0.95 -55.19 10.31 21.65 0.22 -54.97 16 23 Si 0.98 44.43 29.55 68.60 2.03 46.45 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 C 0.13 4.90 6.82 86.86 0.59 5.49 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.93 7.50 -2.38 -0.02 1.91 16 30 H 0.08 2.07 6.17 -2.38 -0.01 2.06 16 31 H 0.08 1.87 7.37 -2.39 -0.02 1.86 16 32 H 0.06 1.53 8.04 -2.39 -0.02 1.52 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.68 7.30 -2.38 -0.02 1.67 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.08 2.40 6.16 -2.38 -0.01 2.38 16 39 H 0.02 1.01 7.38 -2.39 -0.02 0.99 16 40 H 0.01 0.50 7.51 -2.39 -0.02 0.48 16 41 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.03 0.99 7.19 -2.39 -0.02 0.97 16 43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -64.43 332.05 3.52 -60.91 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.99 Total: 15.47 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.05 Total: 4.34 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -4.50 Total: -107.05 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -64.43 3.52 -60.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033344617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.660 kcal (2) G-P(sol) polarization free energy of solvation -64.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds