Wall clock time and date at job start Fri Apr 10 2020 17:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00478 * 2 1 4 4 O 1.21280 * 120.00362 * 175.04238 * 3 2 1 5 5 C 1.50698 * 119.99806 * 355.03958 * 3 2 1 6 6 H 1.09007 * 110.67428 * 31.72281 * 5 3 2 7 7 C 1.54892 * 110.75561 * 154.95384 * 5 3 2 8 8 C 1.54268 * 104.19046 * 156.25901 * 7 5 3 9 9 H 1.09003 * 117.41361 * 116.37917 * 8 7 5 10 10 C 1.52998 * 118.20096 * 272.20843 * 8 7 5 11 11 C 1.52999 * 60.37686 * 93.62156 * 10 8 7 12 12 H 1.09005 * 119.29613 * 111.30652 * 11 10 8 13 13 C 1.54268 * 118.20122 * 266.38521 * 11 10 8 14 14 C 1.46501 * 120.00049 * 180.02562 * 2 1 3 15 15 H 1.08993 * 110.89378 * 183.87555 * 14 2 1 16 16 C 1.55156 * 111.00452 * 59.99001 * 14 2 1 17 17 C 1.54320 * 102.94378 * 206.42622 * 16 14 2 18 18 N 1.47016 * 107.27203 * 22.19892 * 17 16 14 19 19 C 1.36935 * 125.65042 * 181.02382 * 18 17 16 20 20 H 1.08007 * 120.00399 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00299 * 0.02562 * 19 18 17 22 22 N 1.31622 * 119.99377 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00308 * 180.27804 * 21 19 18 24 24 H 1.48504 * 109.47323 * 179.72736 * 23 21 19 25 25 H 1.48505 * 109.47026 * 299.72529 * 23 21 19 26 26 H 1.48500 * 109.47189 * 59.72367 * 23 21 19 27 27 C 1.47419 * 108.70224 * 1.28361 * 18 17 16 28 28 H 1.09002 * 109.46501 * 275.24349 * 1 2 3 29 29 H 1.09004 * 109.47132 * 35.23527 * 1 2 3 30 30 H 1.08992 * 109.47298 * 155.24429 * 1 2 3 31 31 H 1.08994 * 110.48710 * 274.93271 * 7 5 3 32 32 H 1.08997 * 110.48220 * 37.45338 * 7 5 3 33 33 H 1.08994 * 117.46491 * 201.22166 * 10 8 7 34 34 H 1.09003 * 117.45777 * 346.02840 * 10 8 7 35 35 H 1.09002 * 110.48245 * 329.11414 * 13 11 10 36 36 H 1.08993 * 110.48818 * 206.46617 * 13 11 10 37 37 H 1.09003 * 110.71548 * 88.06812 * 16 14 2 38 38 H 1.09002 * 110.72613 * 324.79143 * 16 14 2 39 39 H 1.09000 * 109.88448 * 262.77493 * 17 16 14 40 40 H 1.09005 * 110.00882 * 141.68512 * 17 16 14 41 41 H 0.97003 * 119.99342 * 179.97438 * 22 21 19 42 42 H 1.09002 * 110.36800 * 94.48763 * 27 18 17 43 43 H 1.09001 * 110.37182 * 216.80962 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3484 1.1691 0.0908 5 6 1.3898 2.4698 -0.1128 6 1 0.4084 2.3912 0.3551 7 6 2.2053 3.6281 0.5137 8 6 1.6646 4.8926 -0.1853 9 1 1.1608 5.6330 0.4361 10 6 2.3100 5.3214 -1.5046 11 6 1.0653 4.4319 -1.5256 12 1 0.1246 4.8395 -1.8958 13 6 1.2627 2.9034 -1.5943 14 6 2.1975 -1.2687 -0.0006 15 1 3.2717 -1.0974 0.0683 16 6 1.8482 -2.1120 -1.2552 17 6 2.1062 -3.5582 -0.7825 18 7 2.0263 -3.5584 0.6855 19 6 2.2161 -4.6464 1.4950 20 1 2.1350 -4.5428 2.5670 21 6 2.5126 -5.8828 0.9378 22 7 2.6118 -6.0091 -0.3685 23 14 2.7637 -7.3687 2.0416 24 1 3.0604 -8.5607 1.2072 25 1 3.9001 -7.1143 2.9632 26 1 1.5303 -7.6122 2.8321 27 6 1.7020 -2.1945 1.1414 28 1 -0.3632 0.0939 1.0234 29 1 -0.3633 0.8394 -0.5929 30 1 -0.3633 -0.9331 -0.4303 31 1 2.0291 3.6812 1.5879 32 1 3.2681 3.5011 0.3080 33 1 2.1899 6.3613 -1.8083 34 1 3.2612 4.8611 -1.7717 35 1 2.1731 2.6607 -2.1423 36 1 0.3987 2.4277 -2.0583 37 1 2.5042 -1.8555 -2.0871 38 1 0.8024 -1.9774 -1.5316 39 1 3.0979 -3.8807 -1.0999 40 1 1.3498 -4.2260 -1.1950 41 1 2.8194 -6.8730 -0.7578 42 1 0.6263 -2.0867 1.2806 43 1 2.2297 -1.9686 2.0681 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033344618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:59 Heat of formation + Delta-G solvation = 19.781991 kcal Electronic energy + Delta-G solvation = -22199.191533 eV Core-core repulsion = 19052.838186 eV Total energy + Delta-G solvation = -3146.353347 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.54775 -38.84756 -37.18161 -34.79768 -32.46945 -31.61760 -29.20401 -28.48151 -27.55936 -26.64110 -24.74558 -23.56381 -21.26721 -20.12310 -20.02995 -19.82823 -18.58933 -17.29265 -16.95080 -16.46485 -15.85323 -14.97762 -14.63860 -14.17995 -14.07895 -13.64552 -13.36316 -13.29842 -12.88112 -12.77558 -12.39663 -12.31057 -12.00855 -11.71426 -11.69767 -11.50404 -11.28575 -11.22561 -10.94749 -10.82712 -10.75677 -10.29590 -10.25961 -10.12147 -9.92670 -9.82665 -9.70101 -9.43089 -8.61777 -8.32314 -6.84440 -5.71163 -3.05417 2.68895 3.14849 3.41585 3.44567 3.45819 3.47098 4.20266 4.46677 4.51221 4.57092 4.81713 4.92014 4.98882 5.17405 5.18457 5.27961 5.31633 5.34379 5.44426 5.53343 5.55112 5.58662 5.64421 5.68416 5.73876 5.76337 5.88525 5.91908 5.94837 6.01597 6.17932 6.22307 6.31641 6.49661 6.59104 6.71118 6.98121 7.54312 7.59133 7.63552 7.81966 8.24548 8.36150 9.21311 9.81285 10.46463 11.40342 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.047946 B = 0.003435 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.854183 B = 8149.728294 C = 8267.622094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.601 5.601 3 C 0.519 3.481 4 O -0.542 6.542 5 C -0.113 4.113 6 H 0.098 0.902 7 C -0.082 4.082 8 C -0.164 4.164 9 H 0.110 0.890 10 C -0.153 4.153 11 C -0.166 4.166 12 H 0.111 0.889 13 C -0.080 4.080 14 C 0.122 3.878 15 H 0.106 0.894 16 C -0.153 4.153 17 C 0.179 3.821 18 N -0.603 5.603 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.132 3.868 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.253 0.747 42 H 0.022 0.978 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 20.458 -2.673 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.333 5.333 3 C 0.307 3.693 4 O -0.419 6.419 5 C -0.134 4.134 6 H 0.116 0.884 7 C -0.119 4.119 8 C -0.182 4.182 9 H 0.128 0.872 10 C -0.190 4.190 11 C -0.185 4.185 12 H 0.129 0.871 13 C -0.117 4.117 14 C 0.018 3.982 15 H 0.124 0.876 16 C -0.192 4.192 17 C 0.054 3.946 18 N -0.330 5.330 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.211 1.211 26 H -0.212 1.212 27 C 0.005 3.995 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.702 20.183 -2.646 21.139 hybrid contribution -0.123 -0.866 0.539 1.027 sum -5.825 19.317 -2.107 20.286 Atomic orbital electron populations 1.21794 0.79978 1.03302 1.01689 1.47837 1.06875 1.06055 1.72499 1.20438 0.87859 0.85022 0.75973 1.90673 1.14305 1.87174 1.49772 1.22502 1.00169 0.92742 0.97997 0.88415 1.21863 1.00677 0.90223 0.99182 1.23229 1.04942 1.00126 0.89944 0.87151 1.23080 0.96925 0.99496 0.99466 1.23200 0.98333 0.94154 1.02768 0.87050 1.21826 1.02716 0.93073 0.94121 1.22507 0.97439 0.81143 0.97093 0.87635 1.23244 1.00436 0.98733 0.96766 1.21141 1.01015 0.88921 0.83475 1.44378 1.83048 1.03299 1.02289 1.19013 1.41401 0.85993 0.89369 0.90444 1.24812 1.01852 0.97675 0.96031 1.69953 1.54821 1.23531 1.08659 0.86173 0.78019 0.82148 0.79252 1.21572 1.21121 1.21164 1.21781 0.96977 0.85931 0.94848 0.92549 0.91522 0.90139 0.90975 0.89599 0.88453 0.88754 0.90706 0.90585 0.91993 0.92140 0.93336 0.93682 0.93662 0.96040 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 8.41 59.85 0.50 1.37 16 2 N -0.60 -9.14 2.91 -171.35 -0.50 -9.64 16 3 C 0.52 7.94 6.84 -10.99 -0.08 7.86 16 4 O -0.54 -10.41 15.22 5.56 0.08 -10.32 16 5 C -0.11 -1.24 2.33 -89.78 -0.21 -1.45 16 6 H 0.10 0.90 6.70 -51.92 -0.35 0.55 16 7 C -0.08 -0.88 5.93 -25.07 -0.15 -1.03 16 8 C -0.16 -1.43 6.94 -89.50 -0.62 -2.05 16 9 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 10 C -0.15 -1.27 10.07 -26.73 -0.27 -1.54 16 11 C -0.17 -1.40 6.94 -89.50 -0.62 -2.02 16 12 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 13 C -0.08 -0.78 5.98 -25.07 -0.15 -0.93 16 14 C 0.12 2.31 3.46 -65.66 -0.23 2.08 16 15 H 0.11 2.26 7.02 -51.93 -0.36 1.89 16 16 C -0.15 -2.91 6.49 -24.90 -0.16 -3.07 16 17 C 0.18 4.40 5.38 -3.07 -0.02 4.38 16 18 N -0.60 -15.65 3.39 -169.94 -0.58 -16.22 16 19 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 20 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -27.24 10.31 55.49 0.57 -26.67 16 23 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.13 2.80 6.79 -2.41 -0.02 2.79 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.58 6.23 -51.93 -0.32 0.26 16 30 H 0.08 0.98 6.36 -51.93 -0.33 0.65 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.11 7.24 -51.93 -0.38 0.73 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.85 8.04 -51.93 -0.42 0.44 16 36 H 0.08 0.64 7.78 -51.93 -0.40 0.24 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.04 6.46 -51.93 -0.34 0.70 16 39 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 40 H 0.05 1.20 7.50 -51.93 -0.39 0.81 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.02 0.44 6.96 -51.93 -0.36 0.08 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -32.10 332.96 -9.65 -41.75 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.96 Total: -0.61 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.26 Total: -0.56 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.50 Total: -52.53 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.10 -9.65 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033344618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.534 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds