Wall clock time and date at job start Fri Apr 10 2020 17:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00478 * 2 1 4 4 O 1.21280 * 120.00362 * 175.04238 * 3 2 1 5 5 C 1.50698 * 119.99806 * 355.03958 * 3 2 1 6 6 H 1.09007 * 110.67428 * 31.72281 * 5 3 2 7 7 C 1.54892 * 110.75561 * 154.95384 * 5 3 2 8 8 C 1.54268 * 104.19046 * 156.25901 * 7 5 3 9 9 H 1.09003 * 117.41361 * 116.37917 * 8 7 5 10 10 C 1.52998 * 118.20096 * 272.20843 * 8 7 5 11 11 C 1.52999 * 60.37686 * 93.62156 * 10 8 7 12 12 H 1.09005 * 119.29613 * 111.30652 * 11 10 8 13 13 C 1.54268 * 118.20122 * 266.38521 * 11 10 8 14 14 C 1.46501 * 120.00049 * 180.02562 * 2 1 3 15 15 H 1.08993 * 110.89378 * 183.87555 * 14 2 1 16 16 C 1.55156 * 111.00452 * 59.99001 * 14 2 1 17 17 C 1.54320 * 102.94378 * 206.42622 * 16 14 2 18 18 N 1.47016 * 107.27203 * 22.19892 * 17 16 14 19 19 C 1.36935 * 125.65042 * 181.02382 * 18 17 16 20 20 H 1.08007 * 120.00399 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00299 * 0.02562 * 19 18 17 22 22 N 1.31622 * 119.99377 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00308 * 180.27804 * 21 19 18 24 24 H 1.48504 * 109.47323 * 179.72736 * 23 21 19 25 25 H 1.48505 * 109.47026 * 299.72529 * 23 21 19 26 26 H 1.48500 * 109.47189 * 59.72367 * 23 21 19 27 27 C 1.47419 * 108.70224 * 1.28361 * 18 17 16 28 28 H 1.09002 * 109.46501 * 275.24349 * 1 2 3 29 29 H 1.09004 * 109.47132 * 35.23527 * 1 2 3 30 30 H 1.08992 * 109.47298 * 155.24429 * 1 2 3 31 31 H 1.08994 * 110.48710 * 274.93271 * 7 5 3 32 32 H 1.08997 * 110.48220 * 37.45338 * 7 5 3 33 33 H 1.08994 * 117.46491 * 201.22166 * 10 8 7 34 34 H 1.09003 * 117.45777 * 346.02840 * 10 8 7 35 35 H 1.09002 * 110.48245 * 329.11414 * 13 11 10 36 36 H 1.08993 * 110.48818 * 206.46617 * 13 11 10 37 37 H 1.09003 * 110.71548 * 88.06812 * 16 14 2 38 38 H 1.09002 * 110.72613 * 324.79143 * 16 14 2 39 39 H 1.09000 * 109.88448 * 262.77493 * 17 16 14 40 40 H 1.09005 * 110.00882 * 141.68512 * 17 16 14 41 41 H 0.97003 * 119.99342 * 179.97438 * 22 21 19 42 42 H 1.09002 * 110.36800 * 94.48763 * 27 18 17 43 43 H 1.09001 * 110.37182 * 216.80962 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3484 1.1691 0.0908 5 6 1.3898 2.4698 -0.1128 6 1 0.4084 2.3912 0.3551 7 6 2.2053 3.6281 0.5137 8 6 1.6646 4.8926 -0.1853 9 1 1.1608 5.6330 0.4361 10 6 2.3100 5.3214 -1.5046 11 6 1.0653 4.4319 -1.5256 12 1 0.1246 4.8395 -1.8958 13 6 1.2627 2.9034 -1.5943 14 6 2.1975 -1.2687 -0.0006 15 1 3.2717 -1.0974 0.0683 16 6 1.8482 -2.1120 -1.2552 17 6 2.1062 -3.5582 -0.7825 18 7 2.0263 -3.5584 0.6855 19 6 2.2161 -4.6464 1.4950 20 1 2.1350 -4.5428 2.5670 21 6 2.5126 -5.8828 0.9378 22 7 2.6118 -6.0091 -0.3685 23 14 2.7637 -7.3687 2.0416 24 1 3.0604 -8.5607 1.2072 25 1 3.9001 -7.1143 2.9632 26 1 1.5303 -7.6122 2.8321 27 6 1.7020 -2.1945 1.1414 28 1 -0.3632 0.0939 1.0234 29 1 -0.3633 0.8394 -0.5929 30 1 -0.3633 -0.9331 -0.4303 31 1 2.0291 3.6812 1.5879 32 1 3.2681 3.5011 0.3080 33 1 2.1899 6.3613 -1.8083 34 1 3.2612 4.8611 -1.7717 35 1 2.1731 2.6607 -2.1423 36 1 0.3987 2.4277 -2.0583 37 1 2.5042 -1.8555 -2.0871 38 1 0.8024 -1.9774 -1.5316 39 1 3.0979 -3.8807 -1.0999 40 1 1.3498 -4.2260 -1.1950 41 1 2.8194 -6.8730 -0.7578 42 1 0.6263 -2.0867 1.2806 43 1 2.2297 -1.9686 2.0681 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033344618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:58 Heat of formation + Delta-G solvation = 0.913766 kcal Electronic energy + Delta-G solvation = -22200.009721 eV Core-core repulsion = 19052.838186 eV Total energy + Delta-G solvation = -3147.171534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61517 -39.94368 -38.71888 -36.29092 -34.18223 -32.77345 -31.06724 -29.32737 -29.10235 -27.81074 -26.56821 -24.74504 -22.21733 -22.04003 -21.20351 -20.61682 -19.80177 -18.95344 -18.46522 -17.24944 -17.13223 -16.67047 -16.15514 -15.93055 -15.39673 -14.80869 -14.37238 -14.20588 -14.17082 -14.12156 -13.96527 -13.74559 -13.62965 -13.03840 -12.94500 -12.71062 -12.52371 -12.36832 -12.25815 -12.16270 -12.09123 -12.06142 -11.92639 -11.81531 -11.51605 -10.93826 -10.80804 -10.73429 -10.49395 -9.65304 -8.93819 -7.87471 -5.24613 1.44920 1.48806 1.52907 1.55038 1.92837 2.49187 2.74408 3.30820 3.33932 3.64691 3.75736 3.80213 3.85405 3.91744 4.06378 4.18765 4.22736 4.27020 4.30366 4.46310 4.49587 4.54271 4.61373 4.63120 4.68182 4.75301 4.79591 4.89690 4.93354 4.99218 5.05629 5.11040 5.15975 5.19693 5.36134 5.40253 5.43975 5.56563 5.60798 5.70070 6.15654 6.43744 7.06176 7.15406 7.72169 8.36185 9.22501 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.047946 B = 0.003435 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.854183 B = 8149.728294 C = 8267.622094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.599 5.599 3 C 0.514 3.486 4 O -0.591 6.591 5 C -0.103 4.103 6 H 0.128 0.872 7 C -0.087 4.087 8 C -0.163 4.163 9 H 0.131 0.869 10 C -0.160 4.160 11 C -0.157 4.157 12 H 0.136 0.864 13 C -0.081 4.081 14 C 0.137 3.863 15 H 0.074 0.926 16 C -0.133 4.133 17 C 0.189 3.811 18 N -0.626 5.626 19 C -0.248 4.248 20 H 0.082 0.918 21 C -0.064 4.064 22 N -0.951 5.951 23 Si 0.982 3.018 24 H -0.293 1.293 25 H -0.279 1.279 26 H -0.273 1.273 27 C 0.134 3.866 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.008 0.992 40 H 0.018 0.982 41 H 0.248 0.752 42 H 0.045 0.955 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.902 22.474 -2.363 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.330 5.330 3 C 0.304 3.696 4 O -0.471 6.471 5 C -0.124 4.124 6 H 0.146 0.854 7 C -0.125 4.125 8 C -0.181 4.181 9 H 0.149 0.851 10 C -0.196 4.196 11 C -0.175 4.175 12 H 0.154 0.846 13 C -0.118 4.118 14 C 0.032 3.968 15 H 0.092 0.908 16 C -0.172 4.172 17 C 0.063 3.937 18 N -0.353 5.353 19 C -0.377 4.377 20 H 0.100 0.900 21 C -0.257 4.257 22 N -0.599 5.599 23 Si 0.809 3.191 24 H -0.219 1.219 25 H -0.205 1.205 26 H -0.199 1.199 27 C 0.007 3.993 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.026 0.974 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.261 22.241 -2.323 23.839 hybrid contribution 0.699 -1.459 0.466 1.683 sum -7.563 20.782 -1.856 22.193 Atomic orbital electron populations 1.22118 0.77074 1.04746 1.03484 1.47869 1.08475 1.04463 1.72201 1.21289 0.87526 0.86213 0.74535 1.90658 1.16763 1.87878 1.51825 1.22567 1.00672 0.89814 0.99352 0.85367 1.21863 0.98998 0.91636 0.99960 1.23221 1.05154 0.99618 0.90126 0.85133 1.23159 0.96403 1.00607 0.99464 1.23265 0.99128 0.92942 1.02175 0.84577 1.21860 1.02534 0.94601 0.92850 1.21967 0.96267 0.82758 0.95854 0.90764 1.23042 1.02396 0.94858 0.96869 1.20873 0.97847 0.91822 0.83138 1.44663 1.83119 1.04651 1.02821 1.19419 1.41084 0.87090 0.90067 0.89994 1.25691 1.02040 1.00533 0.97459 1.70176 1.55742 1.23700 1.10284 0.85109 0.78264 0.78245 0.77433 1.21867 1.20534 1.19905 1.21890 0.97954 0.84261 0.95159 0.91028 0.87818 0.90547 0.90373 0.92746 0.86419 0.90555 0.93140 0.88366 0.91108 0.89256 0.97367 0.96406 0.94252 0.93757 0.95087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.28 8.41 127.77 1.07 2.36 16 2 N -0.60 -17.20 2.91 -814.41 -2.37 -19.57 16 3 C 0.51 15.26 6.84 87.66 0.60 15.86 16 4 O -0.59 -23.38 15.22 -3.03 -0.05 -23.42 16 5 C -0.10 -2.01 2.33 -10.25 -0.02 -2.04 16 6 H 0.13 1.76 6.70 -2.38 -0.02 1.75 16 7 C -0.09 -1.76 5.93 31.67 0.19 -1.57 16 8 C -0.16 -2.39 6.94 -10.07 -0.07 -2.46 16 9 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 10 C -0.16 -2.32 10.07 30.59 0.31 -2.02 16 11 C -0.16 -2.09 6.94 -10.07 -0.07 -2.16 16 12 H 0.14 1.22 8.14 -2.38 -0.02 1.20 16 13 C -0.08 -1.36 5.98 31.67 0.19 -1.17 16 14 C 0.14 5.18 3.46 46.46 0.16 5.34 16 15 H 0.07 3.30 7.02 -2.39 -0.02 3.28 16 16 C -0.13 -5.02 6.49 31.78 0.21 -4.81 16 17 C 0.19 9.55 5.38 86.73 0.47 10.01 16 18 N -0.63 -33.13 3.39 -691.55 -2.35 -35.48 16 19 C -0.25 -14.24 10.28 84.03 0.86 -13.38 16 20 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 21 C -0.06 -3.71 5.49 84.86 0.47 -3.25 16 22 N -0.95 -57.97 10.31 21.65 0.22 -57.75 16 23 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 26 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 27 C 0.13 5.66 6.79 86.94 0.59 6.25 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.25 6.23 -2.39 -0.01 1.23 16 30 H 0.08 1.57 6.36 -2.39 -0.02 1.56 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.45 7.24 -2.39 -0.02 1.43 16 33 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.11 8.04 -2.39 -0.02 1.09 16 36 H 0.10 1.23 7.78 -2.39 -0.02 1.21 16 37 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.09 2.88 6.46 -2.39 -0.02 2.86 16 39 H 0.01 0.47 7.38 -2.39 -0.02 0.45 16 40 H 0.02 0.98 7.50 -2.38 -0.02 0.96 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.04 1.71 6.96 -2.39 -0.02 1.69 16 43 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.52 332.96 3.42 -70.10 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.99 Total: 10.76 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 4.95 Total: 6.97 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.49 Total: -112.80 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -73.52 3.42 -70.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033344618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.012 kcal (2) G-P(sol) polarization free energy of solvation -73.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds