Wall clock time and date at job start Fri Apr 10 2020 17:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99678 * 2 1 4 4 C 1.53001 * 109.47325 * 84.58026 * 3 2 1 5 5 H 1.08997 * 113.03879 * 293.49369 * 4 3 2 6 6 C 1.53945 * 113.76950 * 65.25462 * 4 3 2 7 7 C 1.53944 * 86.29264 * 137.90645 * 6 4 3 8 8 N 1.47579 * 86.11697 * 336.39286 * 7 6 4 9 9 C 1.36935 * 134.49114 * 204.64562 * 8 7 6 10 10 H 1.08001 * 120.00079 * 172.95231 * 9 8 7 11 11 C 1.38812 * 120.00186 * 352.94871 * 9 8 7 12 12 N 1.31619 * 119.99552 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00291 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47348 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47221 * 120.00075 * 13 11 9 16 16 H 1.48500 * 109.47492 * 240.00375 * 13 11 9 17 17 C 1.34773 * 120.00538 * 179.97438 * 2 1 3 18 18 O 1.21278 * 120.00296 * 179.97438 * 17 2 1 19 19 C 1.50701 * 119.99704 * 0.02562 * 17 2 1 20 20 H 1.08999 * 109.64359 * 300.00144 * 19 17 2 21 21 C 1.53028 * 109.64046 * 60.41761 * 19 17 2 22 22 C 1.50074 * 110.14545 * 169.11601 * 21 19 17 23 23 C 1.29439 * 124.07888 * 342.87451 * 22 21 19 24 24 C 1.50075 * 124.07461 * 0.48914 * 23 22 21 25 25 C 1.52982 * 110.28357 * 342.97525 * 24 23 22 26 26 H 1.08995 * 109.47081 * 90.94610 * 1 2 3 27 27 H 1.09001 * 109.46448 * 210.94330 * 1 2 3 28 28 H 1.08996 * 109.47302 * 330.94178 * 1 2 3 29 29 H 1.08999 * 109.47152 * 324.57931 * 3 2 1 30 30 H 1.09007 * 109.46953 * 204.58120 * 3 2 1 31 31 H 1.08996 * 113.74424 * 23.55286 * 6 4 3 32 32 H 1.09007 * 113.73611 * 252.25550 * 6 4 3 33 33 H 1.09005 * 113.76614 * 90.68985 * 7 6 4 34 34 H 1.08993 * 113.76743 * 221.97763 * 7 6 4 35 35 H 0.97004 * 119.99906 * 179.97438 * 12 11 9 36 36 H 1.08995 * 109.35729 * 289.32823 * 21 19 17 37 37 H 1.09002 * 109.35890 * 48.91770 * 21 19 17 38 38 H 1.08002 * 117.95936 * 162.88784 * 22 21 19 39 39 H 1.07997 * 117.96736 * 180.46119 * 23 22 21 40 40 H 1.09000 * 109.36072 * 103.05100 * 24 23 22 41 41 H 1.09004 * 109.35666 * 222.64145 * 24 23 22 42 42 H 1.09000 * 109.46928 * 289.53861 * 25 24 23 43 43 H 1.09001 * 109.78807 * 168.92412 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3344 1.7786 1.4360 5 1 1.3801 2.0584 1.8822 6 6 3.1991 0.8763 2.3350 7 6 3.8107 2.1784 2.8831 8 7 3.3920 2.7934 1.6086 9 6 3.8150 3.8723 0.8791 10 1 3.4047 4.0544 -0.1032 11 6 4.7712 4.7320 1.4021 12 7 5.2715 4.5099 2.5991 13 14 5.3477 6.2042 0.4074 14 1 4.6360 6.2305 -0.8958 15 1 5.0550 7.4528 1.1559 16 1 6.8101 6.1000 0.1711 17 6 2.1390 -1.1671 0.0005 18 8 3.3517 -1.1671 0.0001 19 6 1.3855 -2.4723 0.0005 20 1 0.7574 -2.5328 0.8893 21 6 0.5126 -2.5623 -1.2532 22 6 -0.0346 -3.9516 -1.4033 23 6 0.4395 -4.9881 -0.7898 24 6 1.5959 -4.9436 0.1657 25 6 2.3788 -3.6410 -0.0096 26 1 -0.3633 -0.0170 -1.0275 27 1 -0.3632 -0.8814 0.5284 28 1 -0.3634 0.8983 0.4991 29 1 1.6538 2.0021 -0.5956 30 1 3.1885 1.1162 -0.4275 31 1 3.9068 0.2568 1.7841 32 1 2.6267 0.3152 3.0738 33 1 3.2900 2.5755 3.7545 34 1 4.8914 2.1336 3.0173 35 1 5.9399 5.1104 2.9645 36 1 -0.3131 -1.8557 -1.1700 37 1 1.1117 -2.3134 -2.1292 38 1 -0.8762 -4.0956 -2.0647 39 1 -0.0265 -5.9443 -0.9766 40 1 1.2225 -5.0023 1.1880 41 1 2.2551 -5.7905 -0.0253 42 1 2.9106 -3.6619 -0.9608 43 1 3.0897 -3.5248 0.8086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085478755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:40 Heat of formation + Delta-G solvation = 32.474931 kcal Electronic energy + Delta-G solvation = -22358.033934 eV Core-core repulsion = 19212.230995 eV Total energy + Delta-G solvation = -3145.802939 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.33442 -38.18747 -37.21708 -35.23661 -32.16015 -31.50317 -30.95669 -28.28298 -27.74612 -26.50185 -23.93821 -23.24794 -23.09216 -21.74613 -19.10025 -18.85006 -18.11960 -17.01126 -16.50707 -16.30077 -15.64945 -15.14903 -14.69402 -14.24854 -14.02788 -13.76576 -13.56066 -13.35978 -13.14693 -12.94162 -12.57313 -12.31431 -12.28880 -12.15453 -11.83833 -11.32464 -11.07285 -10.98664 -10.86095 -10.76055 -10.63925 -10.48512 -10.34669 -9.81886 -9.63863 -9.49209 -9.29203 -9.19565 -8.72796 -8.25826 -6.77567 -5.69926 -3.01391 2.07110 2.88049 3.21729 3.43108 3.48019 3.50718 4.39107 4.50106 4.53498 4.70954 4.93918 5.05289 5.09490 5.14783 5.27018 5.31461 5.37063 5.39986 5.48093 5.52275 5.61114 5.66332 5.70993 5.76903 5.80674 5.97160 6.03686 6.09826 6.19320 6.21084 6.43865 6.45266 6.62679 6.72075 6.79115 6.84071 6.88507 7.35524 7.55574 7.67398 7.69098 8.06205 8.46969 9.11927 9.78489 10.70420 11.48060 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034980 B = 0.003842 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.271806 B = 7286.540746 C = 7510.315141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.115 3.885 4 C 0.128 3.872 5 H 0.040 0.960 6 C -0.159 4.159 7 C 0.166 3.834 8 N -0.600 5.600 9 C -0.222 4.222 10 H 0.078 0.922 11 C -0.008 4.008 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.515 3.485 18 O -0.529 6.529 19 C -0.105 4.105 20 H 0.096 0.904 21 C -0.091 4.091 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.093 4.093 25 C -0.100 4.100 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.252 0.748 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.386 -17.603 -5.538 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C -0.008 4.008 4 C 0.020 3.980 5 H 0.057 0.943 6 C -0.197 4.197 7 C 0.040 3.960 8 N -0.327 5.327 9 C -0.349 4.349 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.217 1.217 17 C 0.302 3.698 18 O -0.405 6.405 19 C -0.126 4.126 20 H 0.114 0.886 21 C -0.128 4.128 22 C -0.172 4.172 23 C -0.173 4.173 24 C -0.130 4.130 25 C -0.137 4.137 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.537 -17.286 -5.607 22.078 hybrid contribution -0.032 1.036 -0.420 1.118 sum -12.568 -16.250 -6.027 21.409 Atomic orbital electron populations 1.21913 0.80390 1.03107 1.01274 1.47805 1.06521 1.06529 1.73396 1.21799 0.97752 0.82588 0.98670 1.22503 0.92833 0.89631 0.93009 0.94314 1.23830 0.99550 0.97602 0.98699 1.22079 0.99202 0.86329 0.88351 1.45972 1.33720 1.30690 1.22282 1.19030 1.18380 1.00336 0.97183 0.90390 1.24809 1.00147 0.98866 0.96620 1.69855 1.31765 1.38685 1.16325 0.86092 0.78344 0.82649 0.78963 1.20492 1.21837 1.21744 1.20507 0.88045 0.85014 0.76223 1.90713 1.13789 1.87066 1.48887 1.21357 0.97992 0.93230 1.00043 0.88618 1.20648 0.99209 0.95645 0.97255 1.22004 1.00237 0.94402 1.00586 1.22093 0.98223 0.98235 0.98793 1.20497 0.95611 0.98222 0.98659 1.21412 0.96819 0.91858 1.03660 0.92670 0.91210 0.90917 0.91628 0.88956 0.89577 0.94071 0.95671 0.91836 0.93778 0.89695 0.90464 0.87791 0.88051 0.90823 0.90798 0.91223 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 8.82 59.85 0.53 1.29 16 2 N -0.61 -8.85 2.79 -181.57 -0.51 -9.35 16 3 C 0.12 2.13 5.40 -4.04 -0.02 2.10 16 4 C 0.13 2.71 4.58 -66.86 -0.31 2.40 16 5 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.16 -3.36 7.25 -25.81 -0.19 -3.55 16 7 C 0.17 4.19 7.35 -2.98 -0.02 4.17 16 8 N -0.60 -15.92 3.57 -170.76 -0.61 -16.53 16 9 C -0.22 -6.34 10.51 -15.06 -0.16 -6.50 16 10 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -28.22 11.58 55.49 0.64 -27.58 16 13 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 17 C 0.51 7.84 6.63 -10.99 -0.07 7.76 16 18 O -0.53 -10.33 13.82 5.56 0.08 -10.26 16 19 C -0.10 -1.16 1.75 -91.55 -0.16 -1.32 16 20 H 0.10 0.95 7.39 -51.93 -0.38 0.57 16 21 C -0.09 -0.83 4.96 -28.17 -0.14 -0.97 16 22 C -0.15 -1.26 9.80 -35.90 -0.35 -1.62 16 23 C -0.16 -1.26 9.81 -35.90 -0.35 -1.61 16 24 C -0.09 -0.79 6.11 -28.19 -0.17 -0.96 16 25 C -0.10 -1.11 4.70 -26.54 -0.12 -1.23 16 26 H 0.05 0.46 7.15 -51.93 -0.37 0.08 16 27 H 0.07 0.56 5.98 -51.93 -0.31 0.25 16 28 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 29 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 30 H 0.09 2.01 7.27 -51.92 -0.38 1.63 16 31 H 0.09 1.96 6.57 -51.93 -0.34 1.62 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.76 7.50 -51.93 -0.39 1.37 16 35 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.08 0.65 4.95 -51.93 -0.26 0.39 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 43 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -33.50 335.88 -9.02 -42.53 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.03 Total: -1.17 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.64 Total: -0.36 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.47 Total: -53.46 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.50 -9.02 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085478755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.004 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds