Wall clock time and date at job start Fri Apr 10 2020 17:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99911 * 2 1 4 4 C 1.52998 * 109.46974 * 95.00925 * 3 2 1 5 5 H 1.09004 * 112.77567 * 43.57010 * 4 3 2 6 6 C 1.53492 * 113.46895 * 272.78540 * 4 3 2 7 7 C 1.53498 * 83.34333 * 219.15224 * 6 4 3 8 8 N 1.47062 * 87.98647 * 26.06961 * 7 6 4 9 9 C 1.36936 * 136.06116 * 152.92046 * 8 7 6 10 10 H 1.07997 * 120.00245 * 185.11816 * 9 8 7 11 11 C 1.38816 * 120.00128 * 5.10974 * 9 8 7 12 12 N 1.31619 * 119.99763 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00347 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46729 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47238 * 120.00113 * 13 11 9 16 16 H 1.48499 * 109.47193 * 240.00234 * 13 11 9 17 17 C 1.34772 * 120.00253 * 180.02562 * 2 1 3 18 18 O 1.21276 * 120.00156 * 175.77471 * 17 2 1 19 19 C 1.50704 * 119.99798 * 355.76509 * 17 2 1 20 20 H 1.09002 * 109.63739 * 299.58367 * 19 17 2 21 21 C 1.53022 * 109.63985 * 60.00620 * 19 17 2 22 22 C 1.50070 * 110.14583 * 169.11954 * 21 19 17 23 23 C 1.29433 * 124.07434 * 342.86834 * 22 21 19 24 24 C 1.50065 * 124.07982 * 0.44832 * 23 22 21 25 25 C 1.53011 * 110.15118 * 342.90303 * 24 23 22 26 26 H 1.09007 * 109.46998 * 89.99992 * 1 2 3 27 27 H 1.08996 * 109.47462 * 209.99815 * 1 2 3 28 28 H 1.08997 * 109.47289 * 329.99988 * 1 2 3 29 29 H 1.08999 * 109.47015 * 335.01123 * 3 2 1 30 30 H 1.08999 * 109.47221 * 215.01026 * 3 2 1 31 31 H 1.08994 * 114.20919 * 332.73457 * 6 4 3 32 32 H 1.09000 * 114.20947 * 105.56910 * 6 4 3 33 33 H 1.09005 * 113.46958 * 271.28549 * 7 6 4 34 34 H 1.09005 * 113.52241 * 140.85715 * 7 6 4 35 35 H 0.96999 * 120.00572 * 179.97438 * 12 11 9 36 36 H 1.09003 * 109.35865 * 289.32987 * 21 19 17 37 37 H 1.08999 * 109.36173 * 48.91123 * 21 19 17 38 38 H 1.07999 * 117.95981 * 162.89149 * 22 21 19 39 39 H 1.08009 * 117.96063 * 180.46691 * 23 22 21 40 40 H 1.09002 * 109.35941 * 103.09770 * 24 23 22 41 41 H 1.09003 * 109.36008 * 222.82507 * 24 23 22 42 42 H 1.08991 * 109.62776 * 289.72612 * 25 24 23 43 43 H 1.09007 * 109.64395 * 169.09976 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5615 1.6474 1.4370 5 1 2.9347 0.8017 2.0146 6 6 1.4632 2.4423 2.1566 7 6 2.6532 3.2257 2.7280 8 7 3.4145 2.8419 1.5297 9 6 4.4587 3.3657 0.8152 10 1 4.7745 2.8944 -0.1038 11 6 5.1113 4.5026 1.2720 12 7 4.7267 5.0768 2.3921 13 14 6.5352 5.2175 0.2970 14 1 6.7683 4.3926 -0.9156 15 1 6.2096 6.6090 -0.1066 16 1 7.7593 5.2195 1.1377 17 6 2.1389 -1.1671 -0.0005 18 8 3.3492 -1.1685 -0.0779 19 6 1.3885 -2.4705 0.0953 20 1 0.8248 -2.5010 1.0278 21 6 0.4295 -2.6002 -1.0901 22 6 -0.1258 -3.9928 -1.1557 23 6 0.3913 -5.0093 -0.5436 24 6 1.6128 -4.9356 0.3250 25 6 2.3792 -3.6406 0.0479 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.5725 2.0491 -0.4341 30 1 3.1081 1.1626 -0.5896 31 1 0.8235 3.0231 1.4922 32 1 0.9089 1.8677 2.8986 33 1 3.0507 2.8004 3.6495 34 1 2.4726 4.2981 2.8025 35 1 5.1828 5.8710 2.7116 36 1 -0.3890 -1.8900 -0.9720 37 1 0.9649 -2.3808 -2.0138 38 1 -1.0118 -4.1571 -1.7510 39 1 -0.0859 -5.9705 -0.6659 40 1 1.3131 -4.9607 1.3727 41 1 2.2586 -5.7878 0.1133 42 1 2.8393 -3.6914 -0.9388 43 1 3.1484 -3.5004 0.8075 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085478756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:43 Heat of formation + Delta-G solvation = 36.945232 kcal Electronic energy + Delta-G solvation = -22240.914174 eV Core-core repulsion = 19095.305082 eV Total energy + Delta-G solvation = -3145.609093 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.34384 -38.32921 -37.39441 -35.24765 -32.18820 -31.54447 -30.96676 -28.29878 -27.86111 -26.44868 -23.84903 -23.42970 -23.11307 -21.65581 -19.29340 -18.90858 -18.12234 -17.01483 -16.56790 -16.29241 -15.67689 -15.17619 -14.68343 -14.23963 -13.92140 -13.84174 -13.59085 -13.36481 -13.11386 -12.92281 -12.63886 -12.50569 -12.25398 -12.10316 -11.75909 -11.45047 -11.12020 -11.05338 -10.86599 -10.79042 -10.73169 -10.47873 -10.36603 -9.82079 -9.76899 -9.55990 -9.27768 -9.19388 -8.74657 -8.22092 -6.81360 -5.71414 -3.02817 2.06882 2.86356 3.22511 3.43548 3.49596 3.52112 4.38510 4.49686 4.53060 4.70480 4.94354 5.05078 5.09528 5.14550 5.25243 5.30126 5.36289 5.38183 5.46400 5.52253 5.57472 5.64456 5.70123 5.74061 5.79964 5.88549 6.03225 6.09488 6.19563 6.21545 6.34285 6.43579 6.49690 6.60659 6.71810 6.73098 6.93215 7.28820 7.45600 7.62084 7.65002 8.04223 8.44618 9.10810 9.76804 10.71037 11.46910 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.003926 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.866916 B = 7129.766326 C = 7533.145934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.116 3.884 4 C 0.134 3.866 5 H 0.042 0.958 6 C -0.168 4.168 7 C 0.158 3.842 8 N -0.600 5.600 9 C -0.213 4.213 10 H 0.081 0.919 11 C -0.009 4.009 12 N -0.921 5.921 13 Si 0.910 3.090 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.512 3.488 18 O -0.532 6.532 19 C -0.105 4.105 20 H 0.097 0.903 21 C -0.093 4.093 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.093 4.093 25 C -0.100 4.100 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.252 0.748 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.298 -17.041 -4.718 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.344 5.344 3 C -0.007 4.007 4 C 0.026 3.974 5 H 0.059 0.941 6 C -0.207 4.207 7 C 0.032 3.968 8 N -0.326 5.326 9 C -0.341 4.341 10 H 0.099 0.901 11 C -0.205 4.205 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.299 3.701 18 O -0.408 6.408 19 C -0.126 4.126 20 H 0.115 0.885 21 C -0.130 4.130 22 C -0.172 4.172 23 C -0.174 4.174 24 C -0.130 4.130 25 C -0.138 4.138 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.361 -16.776 -4.850 21.988 hybrid contribution 0.730 0.363 -0.342 0.884 sum -12.631 -16.413 -5.192 21.352 Atomic orbital electron populations 1.21980 0.80270 1.03204 1.01322 1.47881 1.06641 1.06538 1.73353 1.21849 0.96859 0.82673 0.99324 1.22400 0.90391 0.91505 0.93109 0.94059 1.23749 0.96883 0.99938 1.00107 1.21931 0.86341 0.98971 0.89559 1.45717 1.37605 1.20401 1.28899 1.18991 1.06174 1.06774 1.02130 0.90099 1.24800 0.99523 0.98799 0.97375 1.69854 1.42897 1.22155 1.21919 0.86065 0.82165 0.78696 0.79024 1.20378 1.21762 1.21754 1.20570 0.87968 0.85116 0.76404 1.90729 1.14097 1.87174 1.48815 1.21362 0.97620 0.93156 1.00495 0.88508 1.20734 0.98645 0.95681 0.97951 1.22005 1.00102 0.94490 1.00625 1.22095 0.97841 0.98351 0.99081 1.20504 0.95053 0.98221 0.99191 1.21421 0.96967 0.91963 1.03443 0.92695 0.91037 0.90752 0.90420 0.90240 0.90603 0.92857 0.95824 0.91588 0.93797 0.89451 0.90464 0.87753 0.88041 0.90769 0.90799 0.91208 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 8.75 59.85 0.52 1.27 16 2 N -0.61 -9.00 2.88 -181.57 -0.52 -9.52 16 3 C 0.12 2.16 5.34 -4.04 -0.02 2.13 16 4 C 0.13 2.87 4.28 -72.40 -0.31 2.56 16 5 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 6 C -0.17 -3.17 8.02 -26.22 -0.21 -3.38 16 7 C 0.16 3.83 7.28 -8.52 -0.06 3.76 16 8 N -0.60 -15.91 3.65 -177.01 -0.65 -16.55 16 9 C -0.21 -6.19 10.55 -15.06 -0.16 -6.34 16 10 H 0.08 2.31 7.83 -52.49 -0.41 1.89 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 12 N -0.92 -28.09 11.64 55.49 0.65 -27.45 16 13 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 17 C 0.51 8.08 7.04 -10.99 -0.08 8.00 16 18 O -0.53 -10.95 15.53 5.56 0.09 -10.87 16 19 C -0.10 -1.19 1.77 -91.56 -0.16 -1.36 16 20 H 0.10 0.98 7.56 -51.93 -0.39 0.59 16 21 C -0.09 -0.86 4.86 -28.18 -0.14 -0.99 16 22 C -0.15 -1.27 9.80 -35.90 -0.35 -1.62 16 23 C -0.16 -1.28 9.80 -35.90 -0.35 -1.63 16 24 C -0.09 -0.81 6.12 -28.18 -0.17 -0.98 16 25 C -0.10 -1.15 4.70 -26.52 -0.12 -1.27 16 26 H 0.05 0.45 7.41 -51.93 -0.38 0.07 16 27 H 0.07 0.57 5.61 -51.93 -0.29 0.28 16 28 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.08 1.35 7.76 -51.93 -0.40 0.95 16 30 H 0.08 1.73 7.52 -51.93 -0.39 1.34 16 31 H 0.08 1.34 7.93 -51.93 -0.41 0.93 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.74 7.36 -51.93 -0.38 1.36 16 35 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.09 0.66 4.75 -51.93 -0.25 0.41 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.10 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.87 8.12 -51.93 -0.42 0.44 16 43 H 0.08 0.98 7.89 -51.92 -0.41 0.57 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -34.10 339.44 -9.14 -43.23 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.08 Total: -1.64 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.71 Total: -0.19 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.52 Total: -53.52 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.10 -9.14 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085478756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.179 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds