Wall clock time and date at job start Fri Apr 10 2020 17:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99911 * 2 1 4 4 C 1.52998 * 109.46974 * 95.00925 * 3 2 1 5 5 H 1.09004 * 112.77567 * 43.57010 * 4 3 2 6 6 C 1.53492 * 113.46895 * 272.78540 * 4 3 2 7 7 C 1.53498 * 83.34333 * 219.15224 * 6 4 3 8 8 N 1.47062 * 87.98647 * 26.06961 * 7 6 4 9 9 C 1.36936 * 136.06116 * 152.92046 * 8 7 6 10 10 H 1.07997 * 120.00245 * 185.11816 * 9 8 7 11 11 C 1.38816 * 120.00128 * 5.10974 * 9 8 7 12 12 N 1.31619 * 119.99763 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00347 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46729 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47238 * 120.00113 * 13 11 9 16 16 H 1.48499 * 109.47193 * 240.00234 * 13 11 9 17 17 C 1.34772 * 120.00253 * 180.02562 * 2 1 3 18 18 O 1.21276 * 120.00156 * 175.77471 * 17 2 1 19 19 C 1.50704 * 119.99798 * 355.76509 * 17 2 1 20 20 H 1.09002 * 109.63739 * 299.58367 * 19 17 2 21 21 C 1.53022 * 109.63985 * 60.00620 * 19 17 2 22 22 C 1.50070 * 110.14583 * 169.11954 * 21 19 17 23 23 C 1.29433 * 124.07434 * 342.86834 * 22 21 19 24 24 C 1.50065 * 124.07982 * 0.44832 * 23 22 21 25 25 C 1.53011 * 110.15118 * 342.90303 * 24 23 22 26 26 H 1.09007 * 109.46998 * 89.99992 * 1 2 3 27 27 H 1.08996 * 109.47462 * 209.99815 * 1 2 3 28 28 H 1.08997 * 109.47289 * 329.99988 * 1 2 3 29 29 H 1.08999 * 109.47015 * 335.01123 * 3 2 1 30 30 H 1.08999 * 109.47221 * 215.01026 * 3 2 1 31 31 H 1.08994 * 114.20919 * 332.73457 * 6 4 3 32 32 H 1.09000 * 114.20947 * 105.56910 * 6 4 3 33 33 H 1.09005 * 113.46958 * 271.28549 * 7 6 4 34 34 H 1.09005 * 113.52241 * 140.85715 * 7 6 4 35 35 H 0.96999 * 120.00572 * 179.97438 * 12 11 9 36 36 H 1.09003 * 109.35865 * 289.32987 * 21 19 17 37 37 H 1.08999 * 109.36173 * 48.91123 * 21 19 17 38 38 H 1.07999 * 117.95981 * 162.89149 * 22 21 19 39 39 H 1.08009 * 117.96063 * 180.46691 * 23 22 21 40 40 H 1.09002 * 109.35941 * 103.09770 * 24 23 22 41 41 H 1.09003 * 109.36008 * 222.82507 * 24 23 22 42 42 H 1.08991 * 109.62776 * 289.72612 * 25 24 23 43 43 H 1.09007 * 109.64395 * 169.09976 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5615 1.6474 1.4370 5 1 2.9347 0.8017 2.0146 6 6 1.4632 2.4423 2.1566 7 6 2.6532 3.2257 2.7280 8 7 3.4145 2.8419 1.5297 9 6 4.4587 3.3657 0.8152 10 1 4.7745 2.8944 -0.1038 11 6 5.1113 4.5026 1.2720 12 7 4.7267 5.0768 2.3921 13 14 6.5352 5.2175 0.2970 14 1 6.7683 4.3926 -0.9156 15 1 6.2096 6.6090 -0.1066 16 1 7.7593 5.2195 1.1377 17 6 2.1389 -1.1671 -0.0005 18 8 3.3492 -1.1685 -0.0779 19 6 1.3885 -2.4705 0.0953 20 1 0.8248 -2.5010 1.0278 21 6 0.4295 -2.6002 -1.0901 22 6 -0.1258 -3.9928 -1.1557 23 6 0.3913 -5.0093 -0.5436 24 6 1.6128 -4.9356 0.3250 25 6 2.3792 -3.6406 0.0479 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.5725 2.0491 -0.4341 30 1 3.1081 1.1626 -0.5896 31 1 0.8235 3.0231 1.4922 32 1 0.9089 1.8677 2.8986 33 1 3.0507 2.8004 3.6495 34 1 2.4726 4.2981 2.8025 35 1 5.1828 5.8710 2.7116 36 1 -0.3890 -1.8900 -0.9720 37 1 0.9649 -2.3808 -2.0138 38 1 -1.0118 -4.1571 -1.7510 39 1 -0.0859 -5.9705 -0.6659 40 1 1.3131 -4.9607 1.3727 41 1 2.2586 -5.7878 0.1133 42 1 2.8393 -3.6914 -0.9388 43 1 3.1484 -3.5004 0.8075 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085478756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:42 Heat of formation + Delta-G solvation = 15.610808 kcal Electronic energy + Delta-G solvation = -22241.839304 eV Core-core repulsion = 19095.305082 eV Total energy + Delta-G solvation = -3146.534223 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50828 -39.92403 -38.47990 -36.54855 -34.31538 -32.48546 -31.73253 -29.93147 -29.59680 -27.50667 -25.45477 -24.93219 -24.09821 -22.96279 -21.10016 -20.13883 -18.93463 -18.66550 -17.91490 -17.47934 -17.03423 -16.52831 -16.31036 -15.81211 -15.19438 -15.09347 -14.72506 -14.49896 -14.18561 -14.08018 -13.84942 -13.63983 -13.44902 -13.29050 -13.16393 -13.02045 -12.80159 -12.67283 -12.43817 -12.21167 -11.95826 -11.85646 -11.62670 -11.62002 -11.28366 -11.23931 -10.89707 -10.60256 -9.81148 -9.57626 -8.93253 -7.94563 -5.27133 1.40973 1.42899 1.47223 1.53278 1.64861 2.03202 2.46086 3.26471 3.44231 3.48405 3.72329 3.81210 3.87555 4.10946 4.25296 4.31236 4.32417 4.36994 4.41860 4.50725 4.53640 4.61871 4.68650 4.74187 4.81638 4.90839 4.91433 4.97180 5.00552 5.05296 5.07712 5.13517 5.21445 5.28323 5.34438 5.47130 5.53100 5.73508 5.82589 5.91926 6.10814 6.48031 6.89762 7.22698 7.57180 8.58884 9.23790 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.003926 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.866916 B = 7129.766326 C = 7533.145934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.606 5.606 3 C 0.131 3.869 4 C 0.133 3.867 5 H 0.020 0.980 6 C -0.125 4.125 7 C 0.148 3.852 8 N -0.631 5.631 9 C -0.225 4.225 10 H 0.075 0.925 11 C -0.065 4.065 12 N -0.952 5.952 13 Si 0.976 3.024 14 H -0.270 1.270 15 H -0.284 1.284 16 H -0.292 1.292 17 C 0.503 3.497 18 O -0.594 6.594 19 C -0.095 4.095 20 H 0.118 0.882 21 C -0.089 4.089 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.088 4.088 25 C -0.102 4.102 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.007 0.993 34 H 0.039 0.961 35 H 0.249 0.751 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.373 -18.399 -5.486 25.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.338 5.338 3 C 0.006 3.994 4 C 0.026 3.974 5 H 0.037 0.963 6 C -0.163 4.163 7 C 0.022 3.978 8 N -0.357 5.357 9 C -0.353 4.353 10 H 0.093 0.907 11 C -0.258 4.258 12 N -0.601 5.601 13 Si 0.804 3.196 14 H -0.195 1.195 15 H -0.210 1.210 16 H -0.220 1.220 17 C 0.293 3.707 18 O -0.474 6.474 19 C -0.116 4.116 20 H 0.136 0.864 21 C -0.126 4.126 22 C -0.174 4.174 23 C -0.178 4.178 24 C -0.125 4.125 25 C -0.140 4.140 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.056 0.944 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.508 -18.163 -5.630 25.182 hybrid contribution 1.696 0.732 -0.078 1.849 sum -14.812 -17.431 -5.708 23.576 Atomic orbital electron populations 1.22382 0.76598 1.05132 1.03527 1.47941 1.08725 1.04734 1.72430 1.21415 0.96185 0.85097 0.96654 1.22476 0.90273 0.89685 0.94950 0.96298 1.23512 0.94983 0.97956 0.99849 1.21983 0.88979 0.98061 0.88769 1.46124 1.37616 1.22556 1.29451 1.19252 1.06909 1.06855 1.02319 0.90743 1.25620 1.02173 0.99414 0.98633 1.70021 1.44077 1.22521 1.23468 0.85042 0.78693 0.78024 0.77803 1.19481 1.21046 1.21957 1.21478 0.87541 0.86719 0.74959 1.90701 1.17022 1.88103 1.51595 1.21374 0.97562 0.90022 1.02641 0.86390 1.20746 0.98463 0.97409 0.95975 1.22109 1.00798 0.93553 1.00984 1.22233 0.97349 0.99367 0.98892 1.20485 0.95339 0.96549 1.00159 1.21399 0.97004 0.93992 1.01630 0.90327 0.88349 0.89670 0.88666 0.94399 0.88473 0.88881 0.97480 0.94239 0.94187 0.87061 0.91884 0.85576 0.86119 0.89712 0.90063 0.93033 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.01 8.75 127.77 1.12 2.12 16 2 N -0.61 -16.96 2.88 -846.76 -2.44 -19.40 16 3 C 0.13 4.84 5.34 86.38 0.46 5.30 16 4 C 0.13 5.71 4.28 41.78 0.18 5.89 16 5 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 6 C -0.13 -4.44 8.02 30.93 0.25 -4.19 16 7 C 0.15 7.28 7.28 83.18 0.61 7.88 16 8 N -0.63 -34.28 3.65 -713.93 -2.60 -36.89 16 9 C -0.23 -13.46 10.55 84.03 0.89 -12.57 16 10 H 0.07 4.41 7.83 -2.91 -0.02 4.39 16 11 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 12 N -0.95 -59.71 11.64 21.65 0.25 -59.46 16 13 Si 0.98 48.20 29.55 68.60 2.03 50.22 16 14 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 16 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 17 C 0.50 15.85 7.04 87.66 0.62 16.47 16 18 O -0.59 -25.78 15.53 -3.02 -0.05 -25.83 16 19 C -0.09 -2.01 1.77 -11.40 -0.02 -2.03 16 20 H 0.12 2.02 7.56 -2.39 -0.02 2.00 16 21 C -0.09 -1.37 4.86 29.66 0.14 -1.23 16 22 C -0.16 -2.00 9.80 27.05 0.27 -1.74 16 23 C -0.16 -2.11 9.80 27.05 0.27 -1.85 16 24 C -0.09 -1.37 6.12 29.65 0.18 -1.19 16 25 C -0.10 -2.33 4.70 30.73 0.14 -2.19 16 26 H 0.08 0.92 7.41 -2.38 -0.02 0.90 16 27 H 0.10 1.05 5.61 -2.39 -0.01 1.03 16 28 H 0.08 1.21 8.07 -2.39 -0.02 1.19 16 29 H 0.10 3.16 7.76 -2.39 -0.02 3.14 16 30 H 0.04 1.71 7.52 -2.39 -0.02 1.70 16 31 H 0.10 3.09 7.93 -2.39 -0.02 3.07 16 32 H 0.09 2.62 8.14 -2.39 -0.02 2.61 16 33 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.04 2.13 7.36 -2.38 -0.02 2.11 16 35 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.11 1.16 4.75 -2.39 -0.01 1.15 16 37 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 38 H 0.13 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.12 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.05 1.33 8.12 -2.39 -0.02 1.31 16 43 H 0.05 1.42 7.89 -2.38 -0.02 1.40 16 Total: -1.00 -79.37 339.44 3.72 -75.64 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.97 Total: 8.48 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 5.56 Total: 7.23 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -4.79 Total: -115.74 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.22 kcal Total: -79.37 3.72 -75.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085478756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.253 kcal (2) G-P(sol) polarization free energy of solvation -79.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds