Wall clock time and date at job start Fri Apr 10 2020 17:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 119.99719 * 2 1 4 4 C 1.52991 * 109.47404 * 276.50415 * 3 2 1 5 5 H 1.08996 * 112.96565 * 49.64288 * 4 3 2 6 6 C 1.53946 * 113.77066 * 181.32182 * 4 3 2 7 7 C 1.53947 * 86.29273 * 137.90880 * 6 4 3 8 8 N 1.47579 * 86.11515 * 336.39343 * 7 6 4 9 9 C 1.36938 * 134.49393 * 204.64245 * 8 7 6 10 10 H 1.07996 * 120.00005 * 186.89857 * 9 8 7 11 11 C 1.38807 * 119.99609 * 6.89762 * 9 8 7 12 12 N 1.31617 * 120.00350 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00047 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46643 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46958 * 119.99840 * 13 11 9 16 16 H 1.48496 * 109.47301 * 240.00179 * 13 11 9 17 17 C 1.34777 * 120.00069 * 180.02562 * 2 1 3 18 18 O 1.21274 * 119.99860 * 185.05978 * 17 2 1 19 19 C 1.50695 * 119.99746 * 5.06504 * 17 2 1 20 20 H 1.09001 * 110.67434 * 316.79824 * 19 17 2 21 21 C 1.54885 * 110.76165 * 80.23921 * 19 17 2 22 22 C 1.54264 * 104.20162 * 156.25679 * 21 19 17 23 23 H 1.08996 * 117.41567 * 116.36945 * 22 21 19 24 24 C 1.53005 * 118.19405 * 272.21228 * 22 21 19 25 25 C 1.53168 * 60.49216 * 93.65826 * 24 22 21 26 26 H 1.08999 * 119.93783 * 111.13187 * 25 24 22 27 27 C 1.54265 * 118.09375 * 266.59327 * 25 24 22 28 28 H 1.09007 * 109.47185 * 264.74143 * 1 2 3 29 29 H 1.09003 * 109.47365 * 24.73794 * 1 2 3 30 30 H 1.09001 * 109.47540 * 144.73910 * 1 2 3 31 31 H 1.09004 * 109.47247 * 36.50856 * 3 2 1 32 32 H 1.09007 * 109.46778 * 156.50354 * 3 2 1 33 33 H 1.09002 * 113.74142 * 252.25591 * 6 4 3 34 34 H 1.09001 * 113.74053 * 23.45386 * 6 4 3 35 35 H 1.09002 * 113.76861 * 90.69510 * 7 6 4 36 36 H 1.08995 * 113.76788 * 222.09456 * 7 6 4 37 37 H 0.97004 * 119.99812 * 180.02562 * 12 11 9 38 38 H 1.09004 * 110.48174 * 274.93538 * 21 19 17 39 39 H 1.09000 * 110.48504 * 37.56902 * 21 19 17 40 40 H 1.09000 * 117.45602 * 201.21039 * 24 22 21 41 41 H 1.08998 * 117.46381 * 346.01335 * 24 22 21 42 42 H 1.08995 * 110.48867 * 328.87219 * 27 25 24 43 43 H 1.08999 * 110.48471 * 206.35343 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3109 1.7922 -1.4331 5 1 1.3569 1.7992 -1.9601 6 6 3.0949 3.1118 -1.5515 7 6 3.7548 2.4919 -2.7966 8 7 3.4139 1.1846 -2.2028 9 6 3.9183 -0.0832 -2.3191 10 1 3.4100 -0.9119 -1.8488 11 6 5.0830 -0.3030 -3.0415 12 7 5.7028 0.7070 -3.6143 13 14 5.7717 -2.0323 -3.1997 14 1 4.8952 -2.9828 -2.4691 15 1 5.8276 -2.4136 -4.6339 16 1 7.1391 -2.0753 -2.6223 17 6 2.1389 -1.1672 -0.0005 18 8 3.3481 -1.1692 0.0921 19 6 1.3898 -2.4696 -0.1163 20 1 0.5026 -2.4609 0.5168 21 6 1.0137 -2.7575 -1.5910 22 6 0.8408 -4.2894 -1.6454 23 1 -0.1505 -4.6744 -1.8843 24 6 2.0765 -5.1469 -1.9263 25 6 1.6650 -4.8684 -0.4775 26 1 1.2803 -5.6772 0.1438 27 6 2.3080 -3.6646 0.2417 28 1 -0.3634 -0.0942 1.0234 29 1 -0.3634 0.9334 -0.4300 30 1 -0.3634 -0.8391 -0.5933 31 1 1.6637 1.9965 0.6114 32 1 3.1953 1.1122 0.4098 33 1 2.4684 3.9762 -1.7713 34 1 3.7865 3.2868 -0.7274 35 1 3.2257 2.7038 -3.7257 36 1 4.8267 2.6776 -2.8641 37 1 6.5165 0.5532 -4.1194 38 1 0.0800 -2.2587 -1.8509 39 1 1.8153 -2.4400 -2.2580 40 1 1.9128 -6.1542 -2.3093 41 1 2.9650 -4.6401 -2.3029 42 1 3.3185 -3.4938 -0.1293 43 1 2.3205 -3.8264 1.3196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085777469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:59 Heat of formation + Delta-G solvation = 56.654812 kcal Electronic energy + Delta-G solvation = -23478.092867 eV Core-core repulsion = 20333.338446 eV Total energy + Delta-G solvation = -3144.754421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18337 -38.50730 -37.34421 -34.90604 -32.00835 -31.66138 -28.46370 -27.99232 -27.64415 -26.17180 -23.70393 -23.15180 -21.86055 -20.51652 -19.60754 -18.93961 -18.39026 -16.93621 -16.44934 -16.14511 -15.53441 -15.13641 -14.55126 -13.88642 -13.75700 -13.43835 -13.22767 -12.93124 -12.86014 -12.66809 -12.39284 -11.99629 -11.48651 -11.37011 -11.24365 -11.12465 -10.96302 -10.92552 -10.84616 -10.74462 -10.56032 -10.36305 -9.93952 -9.85163 -9.54875 -9.52014 -9.14066 -8.92604 -8.52358 -8.00463 -6.62387 -5.50383 -2.81412 3.19817 3.47952 3.53572 3.60571 3.63197 3.80889 4.55670 4.66678 4.81829 4.93164 5.10562 5.24061 5.30194 5.32629 5.35958 5.51490 5.53262 5.60883 5.65054 5.70346 5.73202 5.77092 5.91066 5.94943 5.96478 6.04200 6.08232 6.12969 6.26025 6.33750 6.43055 6.45165 6.48582 6.61785 6.77639 6.84256 7.09260 7.42316 7.60259 7.84485 7.95614 8.27122 8.85987 9.33517 9.99018 10.83116 11.66618 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.009015 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.381959 B = 3105.309456 C = 4529.428228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.615 5.615 3 C 0.116 3.884 4 C 0.125 3.875 5 H 0.040 0.960 6 C -0.158 4.158 7 C 0.150 3.850 8 N -0.596 5.596 9 C -0.192 4.192 10 H 0.096 0.904 11 C -0.017 4.017 12 N -0.931 5.931 13 Si 0.901 3.099 14 H -0.276 1.276 15 H -0.298 1.298 16 H -0.294 1.294 17 C 0.512 3.488 18 O -0.495 6.495 19 C -0.109 4.109 20 H 0.090 0.910 21 C -0.084 4.084 22 C -0.164 4.164 23 H 0.109 0.891 24 C -0.155 4.155 25 C -0.166 4.166 26 H 0.108 0.892 27 C -0.082 4.082 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.020 0.980 36 H 0.079 0.921 37 H 0.246 0.754 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.816 -4.337 7.519 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.350 5.350 3 C -0.008 4.008 4 C 0.016 3.984 5 H 0.057 0.943 6 C -0.197 4.197 7 C 0.025 3.975 8 N -0.322 5.322 9 C -0.320 4.320 10 H 0.113 0.887 11 C -0.211 4.211 12 N -0.580 5.580 13 Si 0.733 3.267 14 H -0.201 1.201 15 H -0.226 1.226 16 H -0.221 1.221 17 C 0.299 3.701 18 O -0.368 6.368 19 C -0.130 4.130 20 H 0.108 0.892 21 C -0.122 4.122 22 C -0.182 4.182 23 H 0.127 0.873 24 C -0.192 4.192 25 C -0.184 4.184 26 H 0.126 0.874 27 C -0.120 4.120 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.037 0.963 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.924 -4.592 7.491 15.628 hybrid contribution 0.137 -0.914 -0.331 0.982 sum -12.787 -5.506 7.159 15.655 Atomic orbital electron populations 1.21714 0.80841 1.02960 1.00722 1.47681 1.06019 1.06440 1.74856 1.21880 0.97842 0.83252 0.97823 1.22641 0.92711 0.91469 0.91542 0.94252 1.23784 0.99402 0.95203 1.01322 1.22296 1.00220 0.83755 0.91259 1.46023 1.32333 1.04985 1.48830 1.19522 1.03810 0.83282 1.25353 0.88705 1.24702 0.97885 0.96935 1.01597 1.69828 1.19854 1.28646 1.39717 0.86163 0.79142 0.84888 0.76514 1.20112 1.22576 1.22138 1.20227 0.88025 0.84722 0.77163 1.90792 1.13506 1.86578 1.45906 1.22431 0.98960 0.93270 0.98364 0.89151 1.21909 1.02339 0.93176 0.94773 1.23228 0.96179 0.94001 1.04817 0.87331 1.23143 0.98709 1.00173 0.97137 1.23293 1.04556 1.00274 0.90288 0.87379 1.21846 0.99891 0.90574 0.99663 0.93430 0.91234 0.91575 0.91957 0.88962 0.93367 0.90782 0.96270 0.90246 0.94360 0.90973 0.89787 0.88635 0.88476 0.89389 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 9.93 59.85 0.59 1.55 16 2 N -0.62 -10.32 2.88 -181.57 -0.52 -10.84 16 3 C 0.12 2.09 5.35 -4.04 -0.02 2.07 16 4 C 0.12 2.54 4.53 -66.87 -0.30 2.23 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.16 -3.05 7.86 -25.80 -0.20 -3.25 16 7 C 0.15 3.67 7.70 -2.97 -0.02 3.64 16 8 N -0.60 -15.56 3.57 -170.77 -0.61 -16.17 16 9 C -0.19 -5.54 9.32 -15.06 -0.14 -5.68 16 10 H 0.10 2.68 3.62 -52.49 -0.19 2.49 16 11 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 12 N -0.93 -29.20 11.28 55.49 0.63 -28.57 16 13 Si 0.90 24.17 29.55 -169.99 -5.02 19.15 16 14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 16 H -0.29 -8.04 7.11 56.52 0.40 -7.63 16 17 C 0.51 9.70 5.41 -10.99 -0.06 9.64 16 18 O -0.49 -11.78 12.34 5.56 0.07 -11.71 16 19 C -0.11 -1.64 2.26 -89.78 -0.20 -1.85 16 20 H 0.09 1.11 7.33 -51.93 -0.38 0.73 16 21 C -0.08 -1.27 5.77 -25.08 -0.14 -1.42 16 22 C -0.16 -2.15 6.94 -89.32 -0.62 -2.77 16 23 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 24 C -0.15 -2.16 10.06 -26.64 -0.27 -2.43 16 25 C -0.17 -2.19 6.97 -89.23 -0.62 -2.81 16 26 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 27 C -0.08 -1.27 5.82 -25.07 -0.15 -1.41 16 28 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.07 0.74 8.03 -51.93 -0.42 0.33 16 30 H 0.07 0.72 5.33 -51.93 -0.28 0.44 16 31 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 32 H 0.09 2.00 7.18 -51.92 -0.37 1.62 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 2.17 6.87 -51.93 -0.36 1.82 16 37 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.07 0.94 6.83 -51.93 -0.35 0.58 16 39 H 0.08 1.62 7.46 -51.93 -0.39 1.23 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.09 1.69 7.27 -51.93 -0.38 1.31 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -34.55 332.10 -9.61 -44.15 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.90 Total: 2.09 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.26 Total: -3.09 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.51 Total: -55.59 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.07 Total: -11.71 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.02 Total: 19.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.55 -9.61 -44.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085777469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.808 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds