Wall clock time and date at job start Fri Apr 10 2020 17:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 119.99933 * 2 1 4 4 C 1.53002 * 109.47154 * 261.36150 * 3 2 1 5 5 H 1.08994 * 112.77944 * 297.76122 * 4 3 2 6 6 C 1.53241 * 113.38351 * 167.05219 * 4 3 2 7 7 C 1.53495 * 83.43102 * 219.29243 * 6 4 3 8 8 N 1.47066 * 113.46502 * 68.54312 * 4 3 2 9 9 C 1.36934 * 136.06120 * 321.93464 * 8 4 3 10 10 H 1.08009 * 119.99477 * 317.10296 * 9 8 4 11 11 C 1.38801 * 120.00304 * 136.82405 * 9 8 4 12 12 N 1.31617 * 120.00220 * 168.52637 * 11 9 8 13 13 Si 1.86799 * 120.00087 * 348.53490 * 11 9 8 14 14 H 1.48502 * 109.47683 * 89.41745 * 13 11 9 15 15 H 1.48503 * 109.47239 * 209.42234 * 13 11 9 16 16 H 1.48506 * 109.46891 * 329.41818 * 13 11 9 17 17 C 1.34772 * 120.00266 * 179.97438 * 2 1 3 18 18 O 1.21290 * 120.00352 * 179.97438 * 17 2 1 19 19 C 1.50700 * 120.00022 * 0.02562 * 17 2 1 20 20 C 1.53896 * 113.58762 * 279.21393 * 19 17 2 21 21 C 1.53420 * 86.82607 * 220.45198 * 20 19 17 22 22 C 1.52459 * 128.60709 * 165.09593 * 21 20 19 23 23 C 1.52458 * 128.52270 * 245.01521 * 21 20 19 24 24 C 1.53257 * 87.72109 * 25.01812 * 21 20 19 25 25 H 1.09003 * 109.47092 * 96.46659 * 1 2 3 26 26 H 1.08999 * 109.46755 * 216.46082 * 1 2 3 27 27 H 1.08995 * 109.47556 * 336.46429 * 1 2 3 28 28 H 1.09000 * 109.47129 * 141.36420 * 3 2 1 29 29 H 1.09003 * 109.47507 * 21.36190 * 3 2 1 30 30 H 1.09002 * 114.32508 * 105.65791 * 6 4 3 31 31 H 1.08994 * 114.19628 * 332.91572 * 6 4 3 32 32 H 1.09006 * 113.46714 * 271.12135 * 7 6 4 33 33 H 1.08994 * 113.52353 * 140.68870 * 7 6 4 34 34 H 0.97002 * 120.00296 * 180.02562 * 12 11 9 35 35 H 1.09001 * 112.83454 * 50.33149 * 19 17 2 36 36 H 1.08997 * 113.64631 * 334.92890 * 20 19 17 37 37 H 1.09000 * 113.63864 * 105.92866 * 20 19 17 38 38 H 1.08997 * 117.51700 * 224.96608 * 22 21 20 39 39 H 1.09008 * 117.51081 * 10.06349 * 22 21 20 40 40 H 1.08997 * 117.51305 * 349.80563 * 23 21 20 41 41 H 1.08998 * 117.51390 * 134.87065 * 23 21 20 42 42 H 1.09001 * 113.65103 * 220.48150 * 24 21 20 43 43 H 1.09007 * 113.64807 * 89.47891 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.6401 1.6021 -1.4261 5 1 3.3232 0.8605 -1.8402 6 6 3.1329 3.0439 -1.5886 7 6 2.3859 2.9618 -2.9270 8 7 1.5232 1.9350 -2.3232 9 6 0.2420 1.4893 -2.5101 10 1 0.0319 0.4299 -2.4996 11 6 -0.7875 2.3991 -2.7072 12 7 -1.9686 1.9796 -3.1088 13 14 -0.4968 4.2190 -2.4026 14 1 -0.0099 4.8585 -3.6513 15 1 -1.7686 4.8599 -1.9817 16 1 0.5192 4.3857 -1.3324 17 6 2.1389 -1.1671 0.0005 18 8 3.3518 -1.1671 0.0001 19 6 1.3854 -2.4723 0.0005 20 6 0.8814 -2.8924 1.3926 21 6 1.2896 -4.3223 1.0150 22 6 1.4614 -5.5340 1.9241 23 6 0.3988 -5.5443 0.8216 24 6 2.2985 -3.7105 0.0368 25 1 -0.3633 -0.1157 -1.0211 26 1 -0.3633 -0.8265 0.6107 27 1 -0.3634 0.9421 0.4103 28 1 3.0743 1.1820 0.6416 29 1 1.5503 2.0620 0.3743 30 1 4.2143 3.1406 -1.6856 31 1 2.6996 3.7470 -0.8774 32 1 3.0007 2.5861 -3.7450 33 1 1.8547 3.8778 -3.1856 34 1 -2.6880 2.6155 -3.2469 35 1 0.6189 -2.5182 -0.7730 36 1 1.4640 -2.4736 2.2132 37 1 -0.1928 -2.7642 1.5255 38 1 2.3463 -6.1530 1.7763 39 1 1.1173 -5.4433 2.9544 40 1 -0.6442 -5.4604 1.1268 41 1 0.5845 -6.1697 -0.0516 42 1 2.3588 -4.2373 -0.9155 43 1 3.2762 -3.5199 0.4794 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085809537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:04 Heat of formation + Delta-G solvation = 79.554677 kcal Electronic energy + Delta-G solvation = -22695.304693 eV Core-core repulsion = 19551.543285 eV Total energy + Delta-G solvation = -3143.761408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31092 -38.80172 -37.71525 -34.74805 -33.54954 -32.44891 -29.06574 -28.05697 -26.01644 -25.71631 -24.28920 -23.29974 -22.55480 -21.94631 -19.20675 -18.49987 -18.26749 -17.29359 -16.56328 -15.76139 -15.52654 -15.17531 -15.09404 -14.88495 -13.79427 -13.77142 -13.41350 -13.05598 -12.55765 -12.53891 -12.36523 -12.07626 -11.83669 -11.74250 -11.58446 -11.49960 -11.37295 -11.15920 -10.97928 -10.84306 -10.43368 -10.33744 -10.26334 -10.16587 -9.92277 -9.70353 -9.48608 -9.11590 -8.54985 -7.93499 -6.70080 -6.04684 -3.55496 3.09414 3.30593 3.41082 3.47516 3.52712 3.77913 4.31273 4.48521 4.57705 4.77755 4.80944 4.86085 4.89173 5.15674 5.23986 5.40838 5.50587 5.53445 5.62122 5.70973 5.75269 5.76938 5.81393 5.89212 5.94976 6.02373 6.03936 6.09224 6.17591 6.21428 6.27016 6.33329 6.41236 6.43999 6.50415 6.57415 6.81974 7.02902 7.22345 7.61703 8.02269 8.27331 8.64510 8.72116 9.56471 10.46765 11.09889 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.005062 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.760107 B = 5530.304305 C = 6223.433768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.589 5.589 3 C 0.122 3.878 4 C 0.126 3.874 5 H 0.056 0.944 6 C -0.158 4.158 7 C 0.099 3.901 8 N -0.613 5.613 9 C -0.224 4.224 10 H 0.082 0.918 11 C 0.039 3.961 12 N -0.906 5.906 13 Si 0.889 3.111 14 H -0.287 1.287 15 H -0.302 1.302 16 H -0.266 1.266 17 C 0.521 3.479 18 O -0.557 6.557 19 C -0.127 4.127 20 C -0.080 4.080 21 C -0.161 4.161 22 C -0.168 4.168 23 C -0.152 4.152 24 C -0.075 4.075 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.884 -8.512 9.409 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.319 5.319 3 C -0.001 4.001 4 C 0.019 3.981 5 H 0.074 0.926 6 C -0.196 4.196 7 C -0.026 4.026 8 N -0.341 5.341 9 C -0.351 4.351 10 H 0.099 0.901 11 C -0.162 4.162 12 N -0.547 5.547 13 Si 0.719 3.281 14 H -0.215 1.215 15 H -0.229 1.229 16 H -0.190 1.190 17 C 0.309 3.691 18 O -0.437 6.437 19 C -0.148 4.148 20 C -0.118 4.118 21 C -0.161 4.161 22 C -0.205 4.205 23 C -0.188 4.188 24 C -0.113 4.113 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.062 -8.527 9.332 13.617 hybrid contribution -0.157 1.155 -0.160 1.176 sum 4.904 -7.373 9.172 12.749 Atomic orbital electron populations 1.22157 0.78483 1.01333 1.04421 1.47606 1.07637 1.05415 1.71255 1.21757 0.95972 0.84652 0.97747 1.22627 0.90660 0.94086 0.90745 0.92618 1.23491 0.98681 0.98085 0.99384 1.22637 0.92088 0.93703 0.94129 1.45692 1.08548 1.43713 1.36168 1.18341 0.78904 0.92326 1.45527 0.90133 1.25530 0.94510 0.98327 0.97826 1.69762 1.02694 1.34836 1.47436 0.86619 0.76386 0.86167 0.78940 1.21456 1.22930 1.19028 1.20298 0.87631 0.85122 0.76047 1.90617 1.14023 1.87547 1.51507 1.22561 0.99917 0.92497 0.99820 1.22417 1.01134 0.92577 0.95659 1.22211 1.02038 0.89741 1.02070 1.22782 1.00951 1.00957 0.95786 1.22774 0.96226 0.99181 1.00656 1.22359 0.97258 0.93447 0.98198 0.88948 0.93355 0.91352 0.91507 0.90562 0.91953 0.90205 0.94375 0.94332 0.92532 0.86821 0.89570 0.90641 0.88827 0.88878 0.88613 0.88634 0.91205 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 8.74 59.84 0.52 1.90 16 2 N -0.59 -10.80 2.76 -181.58 -0.50 -11.30 16 3 C 0.12 2.29 5.25 -4.04 -0.02 2.27 16 4 C 0.13 2.56 4.23 -72.52 -0.31 2.25 16 5 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 6 C -0.16 -2.87 8.01 -26.35 -0.21 -3.08 16 7 C 0.10 2.10 7.62 -8.50 -0.06 2.04 16 8 N -0.61 -14.45 2.94 -177.14 -0.52 -14.97 16 9 C -0.22 -5.88 8.63 -15.06 -0.13 -6.01 16 10 H 0.08 2.27 6.02 -52.48 -0.32 1.95 16 11 C 0.04 1.07 5.50 -17.44 -0.10 0.97 16 12 N -0.91 -26.10 13.97 55.49 0.78 -25.33 16 13 Si 0.89 21.76 25.35 -169.99 -4.31 17.45 16 14 H -0.29 -7.12 7.02 56.52 0.40 -6.72 16 15 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 16 H -0.27 -6.25 6.79 56.52 0.38 -5.87 16 17 C 0.52 9.44 7.11 -10.99 -0.08 9.36 16 18 O -0.56 -11.54 15.63 5.55 0.09 -11.45 16 19 C -0.13 -1.86 2.88 -90.84 -0.26 -2.12 16 20 C -0.08 -0.98 6.81 -26.05 -0.18 -1.16 16 21 C -0.16 -1.84 3.09 -154.71 -0.48 -2.32 16 22 C -0.17 -1.62 10.53 -26.95 -0.28 -1.90 16 23 C -0.15 -1.48 10.53 -26.95 -0.28 -1.76 16 24 C -0.08 -1.01 7.42 -26.13 -0.19 -1.20 16 25 H 0.09 1.92 4.99 -51.93 -0.26 1.66 16 26 H 0.05 0.70 5.92 -51.93 -0.31 0.39 16 27 H 0.07 1.22 7.75 -51.93 -0.40 0.82 16 28 H 0.07 1.18 7.69 -51.93 -0.40 0.78 16 29 H 0.08 1.42 7.74 -51.93 -0.40 1.02 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.44 7.80 -51.93 -0.41 1.03 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.85 5.07 -51.93 -0.26 0.59 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.11 1.68 7.93 -51.93 -0.41 1.27 16 36 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 37 H 0.07 0.84 7.63 -51.93 -0.40 0.44 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.10 1.41 7.44 -51.93 -0.39 1.02 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -30.07 335.45 -8.39 -38.46 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.91 Total: 2.84 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.06 Total: -0.76 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.25 Total: -51.60 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.31 Total: 17.45 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.07 -8.39 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085809537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.014 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds