Wall clock time and date at job start Fri Apr 10 2020 17:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 119.99933 * 2 1 4 4 C 1.53002 * 109.47154 * 261.36150 * 3 2 1 5 5 H 1.08994 * 112.77944 * 297.76122 * 4 3 2 6 6 C 1.53241 * 113.38351 * 167.05219 * 4 3 2 7 7 C 1.53495 * 83.43102 * 219.29243 * 6 4 3 8 8 N 1.47066 * 113.46502 * 68.54312 * 4 3 2 9 9 C 1.36934 * 136.06120 * 321.93464 * 8 4 3 10 10 H 1.08009 * 119.99477 * 317.10296 * 9 8 4 11 11 C 1.38801 * 120.00304 * 136.82405 * 9 8 4 12 12 N 1.31617 * 120.00220 * 168.52637 * 11 9 8 13 13 Si 1.86799 * 120.00087 * 348.53490 * 11 9 8 14 14 H 1.48502 * 109.47683 * 89.41745 * 13 11 9 15 15 H 1.48503 * 109.47239 * 209.42234 * 13 11 9 16 16 H 1.48506 * 109.46891 * 329.41818 * 13 11 9 17 17 C 1.34772 * 120.00266 * 179.97438 * 2 1 3 18 18 O 1.21290 * 120.00352 * 179.97438 * 17 2 1 19 19 C 1.50700 * 120.00022 * 0.02562 * 17 2 1 20 20 C 1.53896 * 113.58762 * 279.21393 * 19 17 2 21 21 C 1.53420 * 86.82607 * 220.45198 * 20 19 17 22 22 C 1.52459 * 128.60709 * 165.09593 * 21 20 19 23 23 C 1.52458 * 128.52270 * 245.01521 * 21 20 19 24 24 C 1.53257 * 87.72109 * 25.01812 * 21 20 19 25 25 H 1.09003 * 109.47092 * 96.46659 * 1 2 3 26 26 H 1.08999 * 109.46755 * 216.46082 * 1 2 3 27 27 H 1.08995 * 109.47556 * 336.46429 * 1 2 3 28 28 H 1.09000 * 109.47129 * 141.36420 * 3 2 1 29 29 H 1.09003 * 109.47507 * 21.36190 * 3 2 1 30 30 H 1.09002 * 114.32508 * 105.65791 * 6 4 3 31 31 H 1.08994 * 114.19628 * 332.91572 * 6 4 3 32 32 H 1.09006 * 113.46714 * 271.12135 * 7 6 4 33 33 H 1.08994 * 113.52353 * 140.68870 * 7 6 4 34 34 H 0.97002 * 120.00296 * 180.02562 * 12 11 9 35 35 H 1.09001 * 112.83454 * 50.33149 * 19 17 2 36 36 H 1.08997 * 113.64631 * 334.92890 * 20 19 17 37 37 H 1.09000 * 113.63864 * 105.92866 * 20 19 17 38 38 H 1.08997 * 117.51700 * 224.96608 * 22 21 20 39 39 H 1.09008 * 117.51081 * 10.06349 * 22 21 20 40 40 H 1.08997 * 117.51305 * 349.80563 * 23 21 20 41 41 H 1.08998 * 117.51390 * 134.87065 * 23 21 20 42 42 H 1.09001 * 113.65103 * 220.48150 * 24 21 20 43 43 H 1.09007 * 113.64807 * 89.47891 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.6401 1.6021 -1.4261 5 1 3.3232 0.8605 -1.8402 6 6 3.1329 3.0439 -1.5886 7 6 2.3859 2.9618 -2.9270 8 7 1.5232 1.9350 -2.3232 9 6 0.2420 1.4893 -2.5101 10 1 0.0319 0.4299 -2.4996 11 6 -0.7875 2.3991 -2.7072 12 7 -1.9686 1.9796 -3.1088 13 14 -0.4968 4.2190 -2.4026 14 1 -0.0099 4.8585 -3.6513 15 1 -1.7686 4.8599 -1.9817 16 1 0.5192 4.3857 -1.3324 17 6 2.1389 -1.1671 0.0005 18 8 3.3518 -1.1671 0.0001 19 6 1.3854 -2.4723 0.0005 20 6 0.8814 -2.8924 1.3926 21 6 1.2896 -4.3223 1.0150 22 6 1.4614 -5.5340 1.9241 23 6 0.3988 -5.5443 0.8216 24 6 2.2985 -3.7105 0.0368 25 1 -0.3633 -0.1157 -1.0211 26 1 -0.3633 -0.8265 0.6107 27 1 -0.3634 0.9421 0.4103 28 1 3.0743 1.1820 0.6416 29 1 1.5503 2.0620 0.3743 30 1 4.2143 3.1406 -1.6856 31 1 2.6996 3.7470 -0.8774 32 1 3.0007 2.5861 -3.7450 33 1 1.8547 3.8778 -3.1856 34 1 -2.6880 2.6155 -3.2469 35 1 0.6189 -2.5182 -0.7730 36 1 1.4640 -2.4736 2.2132 37 1 -0.1928 -2.7642 1.5255 38 1 2.3463 -6.1530 1.7763 39 1 1.1173 -5.4433 2.9544 40 1 -0.6442 -5.4604 1.1268 41 1 0.5845 -6.1697 -0.0516 42 1 2.3588 -4.2373 -0.9155 43 1 3.2762 -3.5199 0.4794 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085809537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:03 Heat of formation + Delta-G solvation = 62.553888 kcal Electronic energy + Delta-G solvation = -22696.041903 eV Core-core repulsion = 19551.543285 eV Total energy + Delta-G solvation = -3144.498618 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57567 -40.26198 -39.08605 -36.26156 -34.57841 -34.42913 -30.81967 -29.71873 -27.46454 -26.74667 -25.66626 -25.17070 -23.50259 -23.18801 -20.89860 -19.86984 -19.31334 -19.13801 -17.97059 -17.25022 -16.97225 -16.73444 -16.23870 -15.99870 -15.38288 -15.24681 -15.02625 -14.84681 -14.40422 -13.77973 -13.62955 -13.35635 -13.23025 -12.99767 -12.97251 -12.88516 -12.72548 -12.67656 -12.43815 -12.29492 -12.12800 -11.90708 -11.64434 -11.35975 -11.26636 -11.24035 -10.67032 -10.57824 -10.41704 -9.47393 -8.61714 -8.12890 -5.62461 1.35167 1.41679 1.54001 1.66905 2.19027 2.46945 2.87401 3.05812 3.23442 3.41073 3.54254 3.69856 3.76435 3.83147 3.91003 4.10493 4.24565 4.37037 4.41993 4.45403 4.56154 4.65405 4.70273 4.74407 4.77722 4.81708 4.82383 4.82637 4.85652 4.94068 4.99990 5.02020 5.05029 5.25785 5.28644 5.32088 5.33738 5.48454 5.70496 5.76046 6.23787 6.55320 6.61057 7.26661 7.48970 8.49111 9.04989 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.005062 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.760107 B = 5530.304305 C = 6223.433768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.594 5.594 3 C 0.123 3.877 4 C 0.124 3.876 5 H 0.039 0.961 6 C -0.132 4.132 7 C 0.090 3.910 8 N -0.636 5.636 9 C -0.205 4.205 10 H 0.053 0.947 11 C -0.009 4.009 12 N -0.948 5.948 13 Si 0.940 3.060 14 H -0.291 1.291 15 H -0.307 1.307 16 H -0.247 1.247 17 C 0.516 3.484 18 O -0.586 6.586 19 C -0.132 4.132 20 C -0.071 4.071 21 C -0.172 4.172 22 C -0.157 4.157 23 C -0.145 4.145 24 C -0.076 4.076 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 -8.576 10.996 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.323 5.323 3 C -0.001 4.001 4 C 0.018 3.982 5 H 0.057 0.943 6 C -0.170 4.170 7 C -0.035 4.035 8 N -0.364 5.364 9 C -0.333 4.333 10 H 0.070 0.930 11 C -0.206 4.206 12 N -0.592 5.592 13 Si 0.769 3.231 14 H -0.219 1.219 15 H -0.235 1.235 16 H -0.171 1.171 17 C 0.306 3.694 18 O -0.468 6.468 19 C -0.153 4.153 20 C -0.108 4.108 21 C -0.172 4.172 22 C -0.194 4.194 23 C -0.182 4.182 24 C -0.113 4.113 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.950 -8.591 10.933 15.124 hybrid contribution -0.328 1.071 -0.715 1.329 sum 5.622 -7.519 10.218 13.876 Atomic orbital electron populations 1.21978 0.78125 1.02393 1.02747 1.47728 1.07874 1.05626 1.71104 1.21733 0.96550 0.85030 0.96813 1.22630 0.89138 0.95435 0.90998 0.94287 1.23365 1.00590 0.96018 0.97066 1.22824 0.92015 0.92524 0.96097 1.45943 1.08368 1.44154 1.37960 1.18179 0.80382 0.91195 1.43553 0.93017 1.26005 0.94339 1.01687 0.98528 1.69873 1.03661 1.35836 1.49857 0.85795 0.76297 0.81959 0.79000 1.21871 1.23543 1.17074 1.20909 0.87501 0.86014 0.74988 1.90590 1.15339 1.88055 1.52818 1.22620 1.00066 0.91010 1.01585 1.22356 1.01812 0.92945 0.93689 1.22084 1.02319 0.90112 1.02668 1.22898 1.01160 0.99087 0.96272 1.22906 0.96756 0.97529 1.00959 1.22291 0.96920 0.93207 0.98913 0.92485 0.90132 0.91795 0.90286 0.90278 0.88392 0.89329 0.93564 0.95027 0.92825 0.87229 0.89787 0.89229 0.88179 0.87626 0.87493 0.88093 0.91135 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.16 8.74 127.77 1.12 4.28 16 2 N -0.59 -21.58 2.76 -846.77 -2.33 -23.92 16 3 C 0.12 4.43 5.25 86.38 0.45 4.88 16 4 C 0.12 4.91 4.23 41.71 0.18 5.08 16 5 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 6 C -0.13 -4.38 8.01 30.84 0.25 -4.13 16 7 C 0.09 3.64 7.62 83.18 0.63 4.27 16 8 N -0.64 -29.59 2.94 -714.35 -2.10 -31.69 16 9 C -0.20 -10.94 8.63 84.03 0.73 -10.21 16 10 H 0.05 3.05 6.02 -2.91 -0.02 3.03 16 11 C -0.01 -0.48 5.50 84.86 0.47 -0.01 16 12 N -0.95 -56.01 13.97 21.65 0.30 -55.70 16 13 Si 0.94 44.65 25.35 68.60 1.74 46.39 16 14 H -0.29 -13.91 7.02 99.48 0.70 -13.21 16 15 H -0.31 -14.76 7.11 99.48 0.71 -14.06 16 16 H -0.25 -10.83 6.79 99.48 0.68 -10.16 16 17 C 0.52 18.66 7.11 87.66 0.62 19.28 16 18 O -0.59 -24.31 15.63 -3.06 -0.05 -24.36 16 19 C -0.13 -3.81 2.88 -10.94 -0.03 -3.84 16 20 C -0.07 -1.61 6.81 31.04 0.21 -1.40 16 21 C -0.17 -3.63 3.09 -52.32 -0.16 -3.79 16 22 C -0.16 -2.62 10.53 30.46 0.32 -2.30 16 23 C -0.14 -2.46 10.53 30.46 0.32 -2.14 16 24 C -0.08 -1.99 7.42 30.98 0.23 -1.76 16 25 H 0.06 2.45 4.99 -2.39 -0.01 2.44 16 26 H 0.08 2.25 5.92 -2.39 -0.01 2.24 16 27 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 28 H 0.08 2.67 7.69 -2.39 -0.02 2.65 16 29 H 0.08 2.81 7.74 -2.39 -0.02 2.79 16 30 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.09 2.84 7.80 -2.39 -0.02 2.82 16 32 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.03 1.33 5.07 -2.39 -0.01 1.32 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.11 3.26 7.93 -2.39 -0.02 3.24 16 36 H 0.08 1.96 8.09 -2.39 -0.02 1.94 16 37 H 0.09 1.78 7.63 -2.39 -0.02 1.76 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 2.40 7.44 -2.38 -0.02 2.38 16 Total: -1.00 -65.32 335.45 3.84 -61.48 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.95 Total: 19.59 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.33 Total: 8.21 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -4.13 Total: -111.31 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.74 Total: 46.39 kcal Total: -65.32 3.84 -61.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085809537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.030 kcal (2) G-P(sol) polarization free energy of solvation -65.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds