Wall clock time and date at job start Fri Apr 10 2020 17:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46978 * 2 1 4 4 C 1.52995 * 109.47094 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47106 * 180.02562 * 4 3 2 6 6 C 1.46893 * 111.00297 * 66.04285 * 5 4 3 7 7 C 1.50704 * 109.47569 * 193.95347 * 6 5 4 8 8 H 1.08004 * 119.99458 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00142 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00479 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99940 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47060 * 60.00088 * 11 9 7 13 13 H 1.48500 * 109.47259 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47158 * 300.00101 * 11 9 7 15 15 C 1.46900 * 111.00062 * 190.00066 * 5 4 3 16 16 C 1.50698 * 109.47284 * 169.99964 * 15 5 4 17 17 C 1.38625 * 120.40324 * 94.99463 * 16 15 5 18 18 C 1.38584 * 118.55842 * 179.72791 * 17 16 15 19 19 N 1.32289 * 119.19724 * 0.25213 * 18 17 16 20 20 C 1.32476 * 120.74352 * 0.02562 * 19 18 17 21 21 N 1.38405 * 119.22131 * 179.97438 * 20 19 18 22 22 C 1.46507 * 119.99756 * 359.97438 * 21 20 19 23 23 N 1.32266 * 120.40172 * 275.21522 * 16 15 5 24 24 H 1.09004 * 109.46743 * 60.00375 * 1 2 3 25 25 H 1.08998 * 109.46782 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47123 * 300.00208 * 1 2 3 27 27 H 1.08992 * 109.47429 * 240.00116 * 2 1 3 28 28 H 1.09004 * 109.46945 * 119.99110 * 2 1 3 29 29 H 1.09004 * 109.47238 * 59.99519 * 3 2 1 30 30 H 1.09007 * 109.47011 * 299.99948 * 3 2 1 31 31 H 1.08998 * 109.47003 * 59.99795 * 4 3 2 32 32 H 1.09004 * 109.46748 * 299.99699 * 4 3 2 33 33 H 1.09004 * 109.47555 * 313.95596 * 6 5 4 34 34 H 1.09003 * 109.47308 * 73.95711 * 6 5 4 35 35 H 0.96994 * 120.00519 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47146 * 49.99486 * 15 5 4 37 37 H 1.09001 * 109.46861 * 289.99412 * 15 5 4 38 38 H 1.08002 * 120.72333 * 0.02562 * 17 16 15 39 39 H 1.08002 * 120.40530 * 180.23213 * 18 17 16 40 40 H 0.96995 * 120.00864 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.46878 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.47162 * 300.00104 * 22 21 20 43 43 H 1.09000 * 109.46819 * 60.00091 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8276 0.0013 6 6 3.7096 3.5092 1.2545 7 6 3.9132 4.9936 1.0930 8 1 4.2668 5.3910 0.1530 9 6 3.6470 5.8445 2.1446 10 7 3.2158 5.3607 3.2891 11 14 3.8987 7.6846 1.9441 12 1 3.0311 8.1863 0.8483 13 1 3.5449 8.3736 3.2111 14 1 5.3206 7.9566 1.6136 15 6 5.5085 2.8738 -0.2363 16 6 5.9335 4.3001 -0.4730 17 6 6.4170 5.0709 0.5729 18 6 6.8023 6.3761 0.3110 19 7 6.6932 6.8464 -0.9207 20 6 6.2218 6.0851 -1.8970 21 7 6.1207 6.6094 -3.1739 22 6 6.5321 7.9915 -3.4328 23 7 5.8457 4.8331 -1.6803 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9289 0.8909 33 1 2.6658 3.3099 1.4973 34 1 4.3464 3.1406 2.0587 35 1 3.0289 5.9593 4.0291 36 1 5.7526 2.2719 -1.1116 37 1 6.0322 2.4785 0.6341 38 1 6.4962 4.6617 1.5692 39 1 7.1867 7.0019 1.1029 40 1 5.7775 6.0620 -3.8973 41 1 6.3804 8.2243 -4.4868 42 1 5.9353 8.6688 -2.8219 43 1 7.5863 8.1097 -3.1823 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140042965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:41 Heat of formation + Delta-G solvation = 60.576955 kcal Electronic energy + Delta-G solvation = -22470.954576 eV Core-core repulsion = 19358.662983 eV Total energy + Delta-G solvation = -3112.291593 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.26991 -37.37743 -35.44337 -34.31300 -32.90100 -32.39798 -30.55394 -28.52218 -27.67114 -25.92221 -25.21376 -22.94999 -22.79008 -21.65768 -20.54838 -19.78550 -17.66853 -16.72596 -16.31961 -15.24681 -14.87893 -14.73284 -14.49389 -14.41989 -14.29964 -13.89115 -13.53833 -13.26333 -13.02177 -12.77423 -12.44304 -12.14857 -12.00514 -11.90200 -11.56852 -11.16391 -11.02001 -10.86133 -10.68921 -10.55212 -10.48320 -10.22743 -10.11295 -9.89061 -9.73104 -9.48144 -8.89118 -8.42557 -8.27272 -7.31449 -7.29284 -6.07391 -3.99740 2.01072 2.15234 3.31287 3.35919 3.43704 3.49136 4.38726 4.58866 4.91936 5.01924 5.26098 5.30488 5.33559 5.38507 5.42686 5.44896 5.58399 5.74136 5.79563 5.92159 5.94991 6.02340 6.03219 6.11685 6.13867 6.19978 6.23446 6.27430 6.32866 6.39948 6.65232 6.71397 6.82966 7.02553 7.20377 7.26301 7.55372 7.75973 7.76656 8.05140 8.10973 8.20389 8.48059 8.98241 9.14502 9.56287 11.02397 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.006440 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.334081 B = 4346.542925 C = 5504.816792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.186 3.814 7 C -0.493 4.493 8 H 0.067 0.933 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.876 3.124 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.259 1.259 15 C 0.116 3.884 16 C 0.251 3.749 17 C -0.196 4.196 18 C 0.151 3.849 19 N -0.574 5.574 20 C 0.538 3.462 21 N -0.718 5.718 22 C 0.116 3.884 23 N -0.559 5.559 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.022 0.978 33 H 0.038 0.962 34 H -0.007 1.007 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.137 0.863 39 H 0.151 0.849 40 H 0.408 0.592 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 -4.395 -7.794 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.154 4.154 4 C -0.067 4.067 5 N -0.255 5.255 6 C 0.061 3.939 7 C -0.531 4.531 8 H 0.085 0.915 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.704 3.296 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.184 1.184 15 C -0.013 4.013 16 C 0.101 3.899 17 C -0.221 4.221 18 C -0.012 4.012 19 N -0.298 5.298 20 C 0.181 3.819 21 N -0.358 5.358 22 C -0.029 4.029 23 N -0.281 5.281 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.011 0.989 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.155 0.845 39 H 0.169 0.831 40 H 0.244 0.756 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.722 -3.498 -8.885 10.249 hybrid contribution 0.116 0.308 1.403 1.441 sum 3.838 -3.190 -7.483 8.994 Atomic orbital electron populations 1.21754 0.96216 1.00844 1.01965 1.21490 0.95595 0.97538 1.01306 1.21619 0.95009 0.95448 1.03278 1.21989 0.95492 0.90064 0.99149 1.62074 1.10156 1.13488 1.39804 1.19905 0.96769 0.93651 0.83609 1.21369 1.42465 0.91101 0.98202 0.91530 1.24833 0.95507 0.98369 0.95243 1.69937 1.45408 1.35108 1.02862 0.86917 0.79904 0.85813 0.77006 1.20716 1.21558 1.18403 1.20739 0.90229 0.90578 0.99775 1.20768 0.86666 0.95525 0.86955 1.22117 1.02857 0.96391 1.00775 1.22486 0.93745 0.92886 0.92088 1.67669 1.22965 1.37992 1.01156 1.19082 0.90355 0.85804 0.86677 1.43542 1.72294 1.14053 1.05867 1.21293 0.99924 0.81961 0.99753 1.67515 1.22924 1.12237 1.25412 0.92856 0.93349 0.92685 0.92525 0.92469 0.91165 0.91522 0.92191 0.95943 0.94437 0.98895 0.92895 0.90707 0.93881 0.84549 0.83140 0.75626 0.91585 0.93011 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.60 5.93 -26.73 -0.16 -1.75 16 3 C -0.12 -1.92 5.17 -26.73 -0.14 -2.06 16 4 C 0.06 1.06 4.96 -3.83 -0.02 1.04 16 5 N -0.53 -11.11 4.56 -237.52 -1.08 -12.19 16 6 C 0.19 4.57 4.56 -4.98 -0.02 4.55 16 7 C -0.49 -13.12 5.79 -34.44 -0.20 -13.32 16 8 H 0.07 1.84 4.91 -52.48 -0.26 1.58 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 11 Si 0.88 21.64 28.74 -169.99 -4.89 16.76 16 12 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.26 -6.03 5.38 56.52 0.30 -5.72 16 15 C 0.12 2.21 5.32 -4.98 -0.03 2.18 16 16 C 0.25 5.23 4.05 -82.26 -0.33 4.89 16 17 C -0.20 -4.06 6.43 -39.31 -0.25 -4.31 16 18 C 0.15 3.07 9.24 -17.23 -0.16 2.91 16 19 N -0.57 -11.93 9.59 -13.93 -0.13 -12.06 16 20 C 0.54 10.89 8.42 -322.81 -2.72 8.17 16 21 N -0.72 -11.66 5.86 -69.11 -0.41 -12.07 16 22 C 0.12 1.52 10.68 59.85 0.64 2.16 16 23 N -0.56 -11.76 10.27 -10.15 -0.10 -11.87 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.33 6.31 -51.93 -0.33 1.00 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.93 7.93 -51.93 -0.41 0.51 16 32 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.04 1.00 5.98 -51.93 -0.31 0.69 16 34 H -0.01 -0.17 7.99 -51.93 -0.41 -0.59 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 37 H 0.04 0.78 7.93 -51.93 -0.41 0.37 16 38 H 0.14 2.79 7.99 -52.49 -0.42 2.37 16 39 H 0.15 2.77 7.59 -52.49 -0.40 2.37 16 40 H 0.41 5.82 8.94 -40.82 -0.37 5.46 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -30.67 341.03 -11.04 -41.72 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.19 Total: 4.74 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -3.12 Total: 4.64 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -0.99 Total: -72.99 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.89 Total: 16.76 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.67 -11.04 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140042965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.293 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds