Wall clock time and date at job start Fri Apr 10 2020 17:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46978 * 2 1 4 4 C 1.52995 * 109.47094 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47106 * 180.02562 * 4 3 2 6 6 C 1.46893 * 111.00297 * 66.04285 * 5 4 3 7 7 C 1.50704 * 109.47569 * 193.95347 * 6 5 4 8 8 H 1.08004 * 119.99458 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00142 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00479 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99940 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47060 * 60.00088 * 11 9 7 13 13 H 1.48500 * 109.47259 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47158 * 300.00101 * 11 9 7 15 15 C 1.46900 * 111.00062 * 190.00066 * 5 4 3 16 16 C 1.50698 * 109.47284 * 169.99964 * 15 5 4 17 17 C 1.38625 * 120.40324 * 94.99463 * 16 15 5 18 18 C 1.38584 * 118.55842 * 179.72791 * 17 16 15 19 19 N 1.32289 * 119.19724 * 0.25213 * 18 17 16 20 20 C 1.32476 * 120.74352 * 0.02562 * 19 18 17 21 21 N 1.38405 * 119.22131 * 179.97438 * 20 19 18 22 22 C 1.46507 * 119.99756 * 359.97438 * 21 20 19 23 23 N 1.32266 * 120.40172 * 275.21522 * 16 15 5 24 24 H 1.09004 * 109.46743 * 60.00375 * 1 2 3 25 25 H 1.08998 * 109.46782 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47123 * 300.00208 * 1 2 3 27 27 H 1.08992 * 109.47429 * 240.00116 * 2 1 3 28 28 H 1.09004 * 109.46945 * 119.99110 * 2 1 3 29 29 H 1.09004 * 109.47238 * 59.99519 * 3 2 1 30 30 H 1.09007 * 109.47011 * 299.99948 * 3 2 1 31 31 H 1.08998 * 109.47003 * 59.99795 * 4 3 2 32 32 H 1.09004 * 109.46748 * 299.99699 * 4 3 2 33 33 H 1.09004 * 109.47555 * 313.95596 * 6 5 4 34 34 H 1.09003 * 109.47308 * 73.95711 * 6 5 4 35 35 H 0.96994 * 120.00519 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47146 * 49.99486 * 15 5 4 37 37 H 1.09001 * 109.46861 * 289.99412 * 15 5 4 38 38 H 1.08002 * 120.72333 * 0.02562 * 17 16 15 39 39 H 1.08002 * 120.40530 * 180.23213 * 18 17 16 40 40 H 0.96995 * 120.00864 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.46878 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.47162 * 300.00104 * 22 21 20 43 43 H 1.09000 * 109.46819 * 60.00091 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8276 0.0013 6 6 3.7096 3.5092 1.2545 7 6 3.9132 4.9936 1.0930 8 1 4.2668 5.3910 0.1530 9 6 3.6470 5.8445 2.1446 10 7 3.2158 5.3607 3.2891 11 14 3.8987 7.6846 1.9441 12 1 3.0311 8.1863 0.8483 13 1 3.5449 8.3736 3.2111 14 1 5.3206 7.9566 1.6136 15 6 5.5085 2.8738 -0.2363 16 6 5.9335 4.3001 -0.4730 17 6 6.4170 5.0709 0.5729 18 6 6.8023 6.3761 0.3110 19 7 6.6932 6.8464 -0.9207 20 6 6.2218 6.0851 -1.8970 21 7 6.1207 6.6094 -3.1739 22 6 6.5321 7.9915 -3.4328 23 7 5.8457 4.8331 -1.6803 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9289 0.8909 33 1 2.6658 3.3099 1.4973 34 1 4.3464 3.1406 2.0587 35 1 3.0289 5.9593 4.0291 36 1 5.7526 2.2719 -1.1116 37 1 6.0322 2.4785 0.6341 38 1 6.4962 4.6617 1.5692 39 1 7.1867 7.0019 1.1029 40 1 5.7775 6.0620 -3.8973 41 1 6.3804 8.2243 -4.4868 42 1 5.9353 8.6688 -2.8219 43 1 7.5863 8.1097 -3.1823 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140042965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:40 Heat of formation + Delta-G solvation = 41.636511 kcal Electronic energy + Delta-G solvation = -22471.775895 eV Core-core repulsion = 19358.662983 eV Total energy + Delta-G solvation = -3113.112912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83249 -38.94730 -36.77741 -35.64470 -34.75512 -34.09633 -32.00797 -29.94459 -29.50342 -27.20881 -26.72084 -24.78387 -24.27237 -23.02320 -21.88556 -21.36261 -19.12122 -18.71551 -17.86400 -16.85134 -16.35526 -16.27583 -16.20701 -15.84787 -15.75636 -15.37486 -15.06629 -14.77211 -14.27993 -14.09129 -13.98558 -13.78797 -13.37225 -13.29836 -13.04382 -12.91914 -12.58195 -12.49279 -12.20445 -12.13404 -11.77788 -11.72113 -11.65285 -11.42944 -11.28260 -11.25513 -10.70854 -10.40447 -9.87304 -8.99474 -8.77931 -8.17796 -6.13869 0.41236 0.57515 1.32570 1.36362 1.43051 2.15736 2.37262 3.00803 3.18842 3.40482 3.50515 3.84408 4.02735 4.09316 4.19168 4.32716 4.41866 4.50104 4.52758 4.58875 4.66075 4.72359 4.72944 4.77438 4.85712 4.97266 4.98472 5.04124 5.11019 5.15129 5.23902 5.31262 5.33533 5.47474 5.52945 5.55310 5.70683 6.09761 6.12302 6.35619 6.38530 6.64476 6.70750 6.89889 7.45314 7.61559 8.92413 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.006440 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.334081 B = 4346.542925 C = 5504.816792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.110 4.110 4 C 0.061 3.939 5 N -0.542 5.542 6 C 0.203 3.797 7 C -0.488 4.488 8 H 0.059 0.941 9 C 0.024 3.976 10 N -0.926 5.926 11 Si 0.918 3.082 12 H -0.299 1.299 13 H -0.287 1.287 14 H -0.238 1.238 15 C 0.115 3.885 16 C 0.241 3.759 17 C -0.211 4.211 18 C 0.150 3.850 19 N -0.586 5.586 20 C 0.527 3.473 21 N -0.709 5.709 22 C 0.114 3.886 23 N -0.571 5.571 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.026 0.974 33 H 0.013 0.987 34 H -0.027 1.027 35 H 0.261 0.739 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.132 0.868 39 H 0.168 0.832 40 H 0.418 0.582 41 H 0.108 0.892 42 H 0.036 0.964 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 -4.786 -9.558 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.148 4.148 4 C -0.067 4.067 5 N -0.267 5.267 6 C 0.077 3.923 7 C -0.526 4.526 8 H 0.077 0.923 9 C -0.175 4.175 10 N -0.567 5.567 11 Si 0.746 3.254 12 H -0.226 1.226 13 H -0.213 1.213 14 H -0.162 1.162 15 C -0.013 4.013 16 C 0.092 3.908 17 C -0.237 4.237 18 C -0.013 4.013 19 N -0.310 5.310 20 C 0.169 3.831 21 N -0.349 5.349 22 C -0.030 4.030 23 N -0.294 5.294 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.044 0.956 33 H 0.031 0.969 34 H -0.009 1.009 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.150 0.850 39 H 0.185 0.815 40 H 0.255 0.745 41 H 0.126 0.874 42 H 0.055 0.945 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.402 -3.888 -10.695 12.202 hybrid contribution -0.059 0.432 1.824 1.875 sum 4.343 -3.456 -8.871 10.464 Atomic orbital electron populations 1.21755 0.95470 1.02117 1.01420 1.21443 0.96238 0.95035 1.02466 1.21560 0.94684 0.97520 1.01083 1.22118 0.95782 0.88218 1.00548 1.61990 1.11623 1.15654 1.37408 1.19531 0.94806 0.93187 0.84762 1.21483 1.41481 0.92101 0.97547 0.92297 1.25354 0.95709 1.01264 0.95148 1.70024 1.47074 1.36056 1.03520 0.86248 0.80591 0.82381 0.76213 1.22573 1.21321 1.16153 1.20833 0.89075 0.90258 1.01126 1.21067 0.86402 0.96301 0.87073 1.22129 1.04053 0.96839 1.00674 1.22820 0.92927 0.92980 0.92560 1.67750 1.23755 1.38142 1.01383 1.19571 0.89757 0.85779 0.87964 1.43790 1.71191 1.15236 1.04674 1.21495 0.99525 0.79859 1.02155 1.67593 1.23601 1.12760 1.25464 0.92824 0.91135 0.93893 0.90546 0.92006 0.94417 0.92600 0.89414 0.95588 0.96921 1.00908 0.93014 0.88354 0.92981 0.85046 0.81506 0.74524 0.87353 0.94492 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.91 71.98 0.71 -2.70 16 2 C -0.11 -2.80 5.93 30.60 0.18 -2.61 16 3 C -0.11 -3.63 5.17 30.59 0.16 -3.47 16 4 C 0.06 2.03 4.96 86.30 0.43 2.46 16 5 N -0.54 -22.48 4.56 -905.39 -4.13 -26.61 16 6 C 0.20 10.21 4.56 85.56 0.39 10.60 16 7 C -0.49 -26.23 5.79 25.60 0.15 -26.08 16 8 H 0.06 3.26 4.91 -2.91 -0.01 3.24 16 9 C 0.02 1.32 5.46 84.65 0.46 1.78 16 10 N -0.93 -53.92 13.29 21.45 0.28 -53.64 16 11 Si 0.92 44.54 28.74 68.60 1.97 46.51 16 12 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 13 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 14 H -0.24 -10.56 5.38 99.48 0.54 -10.02 16 15 C 0.12 4.28 5.32 85.56 0.46 4.74 16 16 C 0.24 9.88 4.05 42.59 0.17 10.05 16 17 C -0.21 -8.67 6.43 22.44 0.14 -8.53 16 18 C 0.15 5.97 9.24 84.71 0.78 6.75 16 19 N -0.59 -23.55 9.59 -198.00 -1.90 -25.45 16 20 C 0.53 20.58 8.42 261.49 2.20 22.78 16 21 N -0.71 -21.52 5.86 -372.57 -2.18 -23.71 16 22 C 0.11 2.69 10.68 127.77 1.36 4.06 16 23 N -0.57 -23.37 10.27 -186.03 -1.91 -25.28 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.47 6.31 -2.38 -0.02 1.45 16 30 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.09 2.46 7.93 -2.39 -0.02 2.45 16 32 H 0.03 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.01 0.70 5.98 -2.39 -0.01 0.69 16 34 H -0.03 -1.43 7.99 -2.39 -0.02 -1.45 16 35 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.10 3.16 7.93 -2.39 -0.02 3.14 16 37 H 0.05 1.83 7.93 -2.39 -0.02 1.82 16 38 H 0.13 5.44 7.99 -2.91 -0.02 5.41 16 39 H 0.17 5.89 7.59 -2.91 -0.02 5.87 16 40 H 0.42 10.92 8.94 -92.71 -0.83 10.09 16 41 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -66.07 341.03 -0.27 -66.34 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.01 Total: 22.01 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 7.60 Total: 19.83 kcal Atomic # 7 Polarization: -144.85 SS G_CDS: -9.84 Total: -154.68 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.97 Total: 46.51 kcal Total: -66.07 -0.27 -66.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140042965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.974 kcal (2) G-P(sol) polarization free energy of solvation -66.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds