Wall clock time and date at job start Fri Apr 10 2020 17:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47376 * 2 1 4 4 C 1.53009 * 109.47024 * 240.00200 * 2 1 3 5 5 C 1.50695 * 109.47374 * 120.00476 * 2 1 3 6 6 N 1.32055 * 119.95797 * 240.00334 * 5 2 1 7 7 C 1.33050 * 119.90970 * 179.97438 * 6 5 2 8 8 N 1.38117 * 120.08324 * 179.97438 * 7 6 5 9 9 C 1.37007 * 120.00455 * 0.02562 * 8 7 6 10 10 H 1.08004 * 119.99374 * 359.97438 * 9 8 7 11 11 C 1.38865 * 120.00175 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99762 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 119.99947 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47196 * 90.00450 * 13 11 9 15 15 H 1.48502 * 109.47315 * 210.00183 * 13 11 9 16 16 H 1.48503 * 109.47537 * 330.00193 * 13 11 9 17 17 N 1.33046 * 119.82803 * 359.97438 * 7 6 5 18 18 C 1.32052 * 119.90868 * 0.02562 * 17 7 6 19 19 C 1.50696 * 119.95836 * 179.97438 * 18 17 7 20 20 C 1.52998 * 109.47473 * 240.01860 * 19 18 17 21 21 C 1.53010 * 109.46850 * 0.02562 * 19 18 17 22 22 C 1.53000 * 109.47370 * 120.01663 * 19 18 17 23 23 N 1.32344 * 120.09082 * 359.97438 * 18 17 7 24 24 H 1.08993 * 109.46977 * 299.99252 * 1 2 3 25 25 H 1.08998 * 109.47226 * 60.00106 * 1 2 3 26 26 H 1.09000 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08989 * 109.47164 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46851 * 300.00678 * 3 2 1 29 29 H 1.09001 * 109.46302 * 60.00146 * 3 2 1 30 30 H 1.09000 * 109.47134 * 299.99841 * 4 2 1 31 31 H 1.08998 * 109.46649 * 59.99978 * 4 2 1 32 32 H 1.09002 * 109.47033 * 179.97438 * 4 2 1 33 33 H 0.97003 * 119.99998 * 180.02562 * 8 7 6 34 34 H 0.96997 * 119.99659 * 179.97438 * 12 11 9 35 35 H 1.09002 * 109.47033 * 60.00001 * 20 19 18 36 36 H 1.09003 * 109.47150 * 179.97438 * 20 19 18 37 37 H 1.08992 * 109.47321 * 299.99623 * 20 19 18 38 38 H 1.08999 * 109.46897 * 59.99975 * 21 19 18 39 39 H 1.08998 * 109.46763 * 179.97438 * 21 19 18 40 40 H 1.08991 * 109.46835 * 300.00081 * 21 19 18 41 41 H 1.09002 * 109.46991 * 60.00516 * 22 19 18 42 42 H 1.08998 * 109.47552 * 180.02562 * 22 19 18 43 43 H 1.08999 * 109.47364 * 300.00629 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2303 6 7 2.7915 -0.0679 2.0991 7 6 3.2341 -0.6960 3.1853 8 7 4.0287 -0.0276 4.0961 9 6 4.3618 1.2840 3.8819 10 1 4.0032 1.7951 3.0006 11 6 5.1611 1.9558 4.7973 12 7 5.4812 3.2147 4.5914 13 14 5.7818 1.0715 6.3211 14 1 7.0889 0.4322 6.0245 15 1 5.9483 2.0484 7.4271 16 1 4.8017 0.0309 6.7233 17 7 2.9093 -1.9696 3.3919 18 6 2.1498 -2.6053 2.5186 19 6 1.7816 -4.0480 2.7512 20 6 2.3002 -4.9002 1.5911 21 6 2.4111 -4.5304 4.0597 22 6 0.2597 -4.1783 2.8391 23 7 1.7114 -1.9773 1.4393 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6767 -1.7489 -1.2494 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7209 -1.2496 33 1 4.3511 -0.4868 4.8874 34 1 6.0392 3.6841 5.2310 35 1 3.3844 -4.8074 1.5285 36 1 2.0343 -5.9438 1.7596 37 1 1.8517 -4.5566 0.6590 38 1 2.0415 -3.9233 4.8861 39 1 2.1444 -5.5737 4.2281 40 1 3.4952 -4.4376 3.9972 41 1 -0.1888 -3.8346 1.9070 42 1 -0.0066 -5.2217 3.0078 43 1 -0.1098 -3.5712 3.6655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:12 Heat of formation + Delta-G solvation = 44.078422 kcal Electronic energy + Delta-G solvation = -22671.954293 eV Core-core repulsion = 19558.947270 eV Total energy + Delta-G solvation = -3113.007023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70024 -37.19532 -36.71723 -34.98662 -32.52708 -31.67140 -30.88332 -27.06868 -27.01189 -26.94512 -26.83127 -25.18125 -24.22431 -22.60778 -19.96623 -19.06180 -18.25036 -16.85607 -16.51381 -15.01880 -14.91660 -14.74209 -14.35694 -13.84798 -13.63875 -13.43482 -13.34424 -13.23361 -12.87998 -12.39837 -12.23760 -12.05056 -11.90305 -11.72477 -11.61579 -11.40695 -11.28864 -11.26837 -11.01174 -10.78847 -10.76946 -10.74682 -10.65435 -10.46431 -10.43538 -10.19580 -9.56355 -9.28545 -8.48351 -8.25181 -7.97359 -6.60883 -3.96402 2.02982 2.18143 2.97533 2.98518 3.03326 3.88239 4.01656 4.42746 4.58695 4.59313 5.05849 5.13945 5.20894 5.26511 5.41426 5.47279 5.48780 5.73345 5.80930 5.86554 5.91443 5.94996 6.03779 6.05472 6.07408 6.14123 6.14710 6.19723 6.21658 6.33249 6.34436 6.46426 6.47648 6.52802 6.67260 6.68444 6.94111 7.07297 7.28012 7.77739 7.85895 8.10347 8.44233 8.92643 9.08033 9.67248 10.48977 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.006902 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.253515 B = 4056.050737 C = 5698.022961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.005 3.995 3 C -0.125 4.125 4 C -0.129 4.129 5 C 0.394 3.606 6 N -0.588 5.588 7 C 0.518 3.482 8 N -0.515 5.515 9 C -0.289 4.289 10 H 0.134 0.866 11 C 0.046 3.954 12 N -0.858 5.858 13 Si 0.877 3.123 14 H -0.266 1.266 15 H -0.271 1.271 16 H -0.265 1.265 17 N -0.630 5.630 18 C 0.396 3.604 19 C 0.005 3.995 20 C -0.129 4.129 21 C -0.125 4.125 22 C -0.129 4.129 23 N -0.632 5.632 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.391 0.609 34 H 0.280 0.720 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.276 -10.853 -5.633 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.002 3.998 3 C -0.183 4.183 4 C -0.187 4.187 5 C 0.115 3.885 6 N -0.320 5.320 7 C 0.160 3.840 8 N -0.130 5.130 9 C -0.421 4.421 10 H 0.152 0.848 11 C -0.161 4.161 12 N -0.494 5.494 13 Si 0.702 3.298 14 H -0.191 1.191 15 H -0.195 1.195 16 H -0.190 1.190 17 N -0.364 5.364 18 C 0.117 3.883 19 C 0.002 3.998 20 C -0.188 4.188 21 C -0.182 4.182 22 C -0.188 4.188 23 N -0.365 5.365 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.929 -10.294 -5.388 13.528 hybrid contribution 0.724 -0.291 1.379 1.585 sum -6.205 -10.585 -4.009 12.908 Atomic orbital electron populations 1.21752 0.93212 1.02400 1.01345 1.19252 0.95664 0.95059 0.89786 1.21658 1.02117 0.93415 1.01086 1.21756 1.00850 1.00687 0.95418 1.22744 0.86462 0.86713 0.92533 1.68341 1.18916 1.39390 1.05366 1.18903 0.91469 0.85335 0.88329 1.40745 1.42050 1.11343 1.18874 1.19693 1.28277 0.83914 1.10181 0.84819 1.25063 0.96897 0.95740 0.98385 1.69643 1.34556 1.08758 1.36436 0.86660 0.80179 0.80082 0.82867 1.19112 1.19548 1.18995 1.68123 1.23549 1.09495 1.35189 1.22531 0.85955 0.95163 0.84653 1.19238 0.96336 0.87419 0.96760 1.21756 1.00844 0.98331 0.97828 1.21658 1.01323 0.99274 0.95990 1.21757 0.93344 1.01128 1.02535 1.68348 1.32805 1.10959 1.24359 0.93051 0.92324 0.91673 0.91848 0.93287 0.91859 0.91670 0.92325 0.93049 0.77252 0.90969 0.93095 0.92341 0.91451 0.92191 0.93124 0.92178 0.91450 0.92341 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.38 37.16 0.31 -1.52 16 2 C 0.00 0.08 0.93 -155.66 -0.15 -0.07 16 3 C -0.12 -2.09 7.69 37.16 0.29 -1.80 16 4 C -0.13 -1.83 8.38 37.16 0.31 -1.52 16 5 C 0.39 8.07 6.25 -156.50 -0.98 7.09 16 6 N -0.59 -13.90 7.94 -11.44 -0.09 -13.99 16 7 C 0.52 12.58 8.43 -321.79 -2.71 9.86 16 8 N -0.51 -12.72 5.22 -12.62 -0.07 -12.79 16 9 C -0.29 -7.76 10.19 -15.01 -0.15 -7.91 16 10 H 0.13 3.93 7.31 -52.48 -0.38 3.55 16 11 C 0.05 1.21 5.50 -17.46 -0.10 1.12 16 12 N -0.86 -23.54 13.96 55.49 0.77 -22.76 16 13 Si 0.88 19.08 27.73 -169.99 -4.71 14.37 16 14 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.26 -5.54 6.52 56.52 0.37 -5.17 16 17 N -0.63 -13.91 9.22 -11.44 -0.11 -14.01 16 18 C 0.40 7.74 6.25 -156.50 -0.98 6.76 16 19 C 0.00 0.07 0.93 -155.66 -0.15 -0.07 16 20 C -0.13 -1.70 8.38 37.16 0.31 -1.38 16 21 C -0.12 -1.77 7.69 37.16 0.29 -1.49 16 22 C -0.13 -1.70 8.38 37.16 0.31 -1.39 16 23 N -0.63 -12.27 9.52 -8.28 -0.08 -12.35 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 27 H 0.06 1.17 8.06 -51.94 -0.42 0.75 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 30 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.39 9.08 5.88 -40.82 -0.24 8.84 16 34 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.90 8.05 -51.93 -0.42 0.49 16 38 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 41 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -28.52 349.09 -9.78 -38.30 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.37 Total: 10.30 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -3.39 Total: 7.67 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: 0.43 Total: -75.90 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.52 -9.78 -38.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.379 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds