Wall clock time and date at job start Fri Apr 10 2020 17:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47198 * 2 1 4 4 C 1.46901 * 110.99436 * 66.04887 * 3 2 1 5 5 C 1.53001 * 109.46968 * 195.94671 * 4 3 2 6 6 C 1.46896 * 110.99988 * 190.00157 * 3 2 1 7 7 C 1.50698 * 109.46899 * 75.67002 * 6 3 2 8 8 C 1.38025 * 119.97863 * 254.55797 * 7 6 3 9 9 C 1.39060 * 119.96205 * 179.78953 * 8 7 6 10 10 N 1.39402 * 120.03458 * 180.25686 * 9 8 7 11 11 C 1.36837 * 120.00437 * 180.23389 * 10 9 8 12 12 H 1.08006 * 119.99741 * 0.02562 * 11 10 9 13 13 C 1.38753 * 120.00319 * 180.02562 * 11 10 9 14 14 N 1.31614 * 120.00189 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99884 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47175 * 90.00030 * 15 13 11 17 17 H 1.48504 * 109.46944 * 210.00019 * 15 13 11 18 18 H 1.48497 * 109.46929 * 329.99832 * 15 13 11 19 19 C 1.39105 * 119.93365 * 0.49656 * 9 8 7 20 20 C 1.37974 * 119.96600 * 359.73963 * 19 9 8 21 21 C 1.38777 * 119.98680 * 74.84281 * 7 6 3 22 22 O 1.35944 * 119.96331 * 359.97438 * 21 7 6 23 23 C 1.42898 * 117.00192 * 180.02562 * 22 21 7 24 24 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47104 * 299.99482 * 1 2 3 26 26 H 1.08996 * 109.47610 * 59.99997 * 1 2 3 27 27 H 1.09004 * 109.47235 * 120.00524 * 2 1 3 28 28 H 1.08998 * 109.47104 * 240.00517 * 2 1 3 29 29 H 1.08999 * 109.47330 * 315.94596 * 4 3 2 30 30 H 1.09004 * 109.47414 * 75.95289 * 4 3 2 31 31 H 1.08997 * 109.47368 * 180.47350 * 5 4 3 32 32 H 1.09003 * 109.47196 * 300.47509 * 5 4 3 33 33 H 1.09003 * 109.47150 * 60.46971 * 5 4 3 34 34 H 1.09007 * 109.46850 * 195.66616 * 6 3 2 35 35 H 1.08993 * 109.47181 * 315.66698 * 6 3 2 36 36 H 1.07999 * 120.02110 * 0.03080 * 8 7 6 37 37 H 0.97000 * 120.00101 * 0.23983 * 10 9 8 38 38 H 0.97002 * 120.00356 * 180.02562 * 14 13 11 39 39 H 1.08000 * 120.02038 * 179.72581 * 19 9 8 40 40 H 1.07998 * 119.98836 * 180.02562 * 20 19 9 41 41 H 1.09008 * 109.46438 * 299.99790 * 23 22 21 42 42 H 1.09001 * 109.47243 * 59.99172 * 23 22 21 43 43 H 1.08998 * 109.47454 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0668 1.2534 5 6 1.8292 3.5778 1.0735 6 6 3.4685 1.4311 -0.2382 7 6 3.7460 1.1757 -1.6972 8 6 4.2560 -0.0422 -2.0993 9 6 4.5079 -0.2791 -3.4462 10 7 5.0180 -1.5105 -3.8546 11 6 5.2701 -1.7412 -5.1796 12 1 5.0743 -0.9691 -5.9090 13 6 5.7773 -2.9671 -5.5862 14 7 6.0155 -3.9082 -4.6975 15 14 6.1221 -3.2817 -7.3950 16 1 7.5166 -2.8803 -7.7102 17 1 5.9445 -4.7265 -7.6887 18 1 5.1793 -2.4885 -8.2238 19 6 4.2550 0.7157 -4.3851 20 6 3.7497 1.9338 -3.9794 21 6 3.4942 2.1671 -2.6351 22 8 2.9968 3.3679 -2.2368 23 6 2.7608 4.3424 -3.2550 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 0.6369 1.8389 1.5152 30 1 2.3309 1.7243 2.0498 31 1 1.5780 4.0832 2.0060 32 1 2.8606 3.8051 0.8035 33 1 1.1625 3.9218 0.2827 34 1 3.8509 2.4139 0.0378 35 1 3.9602 0.6675 0.3644 36 1 4.4558 -0.8121 -1.3688 37 1 5.1942 -2.2038 -3.1996 38 1 6.3705 -4.7650 -4.9816 39 1 4.4543 0.5347 -5.4310 40 1 3.5529 2.7062 -4.7081 41 1 3.6970 4.5680 -3.7659 42 1 2.0404 3.9505 -3.9730 43 1 2.3657 5.2520 -2.8029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:14 Heat of formation + Delta-G solvation = -23.302038 kcal Electronic energy + Delta-G solvation = -22133.128848 eV Core-core repulsion = 18984.907238 eV Total energy + Delta-G solvation = -3148.221610 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90711 -38.80618 -38.63788 -36.12540 -33.60227 -32.71436 -32.59504 -30.08550 -29.31363 -27.69135 -26.33650 -25.92110 -23.85705 -22.78364 -22.06879 -21.00735 -19.52939 -18.52837 -17.80006 -16.93467 -16.53808 -16.24706 -16.14387 -15.98895 -15.56131 -15.49500 -15.00774 -14.74746 -14.37999 -13.93634 -13.82685 -13.51553 -13.32277 -13.06795 -12.91988 -12.88541 -12.62285 -12.49777 -12.44350 -12.34290 -12.23013 -12.18394 -12.04599 -11.76038 -11.45469 -11.23632 -11.18933 -10.20801 -9.56146 -9.09632 -8.38300 -8.08115 -5.60502 0.65743 1.01028 1.41934 1.49109 1.53890 2.32232 2.84177 2.87807 3.16287 3.47332 3.56414 4.01064 4.09599 4.13795 4.28009 4.35898 4.45385 4.53957 4.58577 4.58863 4.64610 4.69591 4.72628 4.79491 4.82468 4.88720 4.93039 4.99644 5.10474 5.19921 5.23784 5.33615 5.35820 5.38191 5.53103 5.55754 5.74284 5.84838 5.95850 6.18512 6.25911 6.36706 6.91436 6.95351 7.63406 7.76011 8.81244 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.004458 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.683257 B = 6278.671852 C = 7102.945777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.048 3.952 3 N -0.533 5.533 4 C 0.047 3.953 5 C -0.136 4.136 6 C 0.114 3.886 7 C -0.052 4.052 8 C -0.202 4.202 9 C 0.171 3.829 10 N -0.600 5.600 11 C -0.308 4.308 12 H 0.099 0.901 13 C -0.037 4.037 14 N -0.940 5.940 15 Si 0.993 3.007 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.262 1.262 19 C -0.204 4.204 20 C -0.146 4.146 21 C 0.040 3.960 22 O -0.318 6.318 23 C 0.026 3.974 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.035 0.965 36 H 0.110 0.890 37 H 0.388 0.612 38 H 0.270 0.730 39 H 0.108 0.892 40 H 0.135 0.865 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.598 13.476 8.697 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 N -0.258 5.258 4 C -0.080 4.080 5 C -0.193 4.193 6 C -0.013 4.013 7 C -0.054 4.054 8 C -0.227 4.227 9 C 0.057 3.943 10 N -0.210 5.210 11 C -0.438 4.438 12 H 0.117 0.883 13 C -0.234 4.234 14 N -0.581 5.581 15 Si 0.817 3.183 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.186 1.186 19 C -0.229 4.229 20 C -0.165 4.165 21 C -0.007 4.007 22 O -0.232 6.232 23 C -0.069 4.069 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.128 0.872 37 H 0.221 0.779 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.153 0.847 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.753 13.503 8.266 18.091 hybrid contribution 0.997 -1.451 -0.445 1.816 sum -7.756 12.052 7.821 16.327 Atomic orbital electron populations 1.21730 0.93794 1.01833 1.02214 1.22077 0.96912 0.89067 0.99948 1.61970 1.12784 1.15607 1.35392 1.22203 1.01220 0.95392 0.89193 1.21679 1.01737 0.94272 1.01652 1.20736 0.88452 1.01132 0.90982 1.18730 1.00250 0.91427 0.94968 1.20108 1.11363 0.98012 0.93229 1.18146 0.95791 0.87007 0.93351 1.40804 1.61651 1.11003 1.07521 1.19903 1.39358 0.99815 0.84678 0.88295 1.26034 0.98213 0.95233 1.03951 1.69808 1.46728 1.05863 1.35736 0.84897 0.78679 0.77409 0.77288 1.20089 1.20851 1.18636 1.20374 1.09879 0.94116 0.98485 1.21013 1.02958 0.97523 0.95020 1.18248 1.03674 0.87088 0.91714 1.86009 1.80340 1.21274 1.35615 1.23065 1.00510 0.91313 0.92015 0.91762 0.91377 0.93120 0.94877 0.92858 0.89739 0.94982 0.91064 0.93465 0.92766 0.89541 0.94676 0.87204 0.77862 0.92104 0.87355 0.84686 0.93206 0.93467 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.88 71.98 0.71 -2.44 16 2 C 0.05 1.31 5.50 86.30 0.47 1.79 16 3 N -0.53 -14.70 4.38 -900.80 -3.95 -18.64 16 4 C 0.05 1.01 5.55 86.30 0.48 1.49 16 5 C -0.14 -2.69 9.98 71.98 0.72 -1.97 16 6 C 0.11 3.47 4.57 85.56 0.39 3.86 16 7 C -0.05 -1.90 4.82 -19.79 -0.10 -2.00 16 8 C -0.20 -8.34 8.86 22.42 0.20 -8.14 16 9 C 0.17 7.97 6.62 38.34 0.25 8.22 16 10 N -0.60 -31.41 5.44 -184.24 -1.00 -32.41 16 11 C -0.31 -16.66 9.55 84.04 0.80 -15.86 16 12 H 0.10 5.15 5.68 -2.91 -0.02 5.13 16 13 C -0.04 -2.01 5.50 84.85 0.47 -1.54 16 14 N -0.94 -53.38 13.05 21.64 0.28 -53.09 16 15 Si 0.99 42.60 29.55 68.60 2.03 44.62 16 16 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 17 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 C -0.20 -8.89 9.30 22.42 0.21 -8.68 16 20 C -0.15 -5.40 9.03 22.35 0.20 -5.20 16 21 C 0.04 1.45 6.66 22.54 0.15 1.60 16 22 O -0.32 -9.80 9.82 -92.92 -0.91 -10.71 16 23 C 0.03 0.59 9.81 113.37 1.11 1.70 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.29 6.28 -2.39 -0.02 1.28 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.03 0.85 8.12 -2.38 -0.02 0.83 16 28 H 0.05 1.77 6.89 -2.39 -0.02 1.75 16 29 H 0.08 1.61 5.94 -2.39 -0.01 1.59 16 30 H 0.03 0.66 8.05 -2.38 -0.02 0.64 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.03 6.53 -2.39 -0.02 1.01 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 2.51 6.11 -2.38 -0.01 2.49 16 35 H 0.04 1.05 7.80 -2.39 -0.02 1.03 16 36 H 0.11 4.38 8.00 -2.91 -0.02 4.36 16 37 H 0.39 20.97 7.90 -92.71 -0.73 20.24 16 38 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.11 4.82 5.95 -2.91 -0.02 4.80 16 40 H 0.14 4.17 6.29 -2.91 -0.02 4.15 16 41 H 0.05 1.05 7.66 -2.38 -0.02 1.03 16 42 H 0.05 1.04 7.66 -2.39 -0.02 1.02 16 43 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -60.53 343.07 2.80 -57.73 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: 0.28 Total: 39.67 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 6.07 Total: -27.16 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -4.67 Total: -104.15 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.91 Total: -10.71 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -60.53 2.80 -57.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.432 kcal (2) G-P(sol) polarization free energy of solvation -60.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds