Wall clock time and date at job start Fri Apr 10 2020 17:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35675 * 117.00163 * 2 1 4 4 C 1.38042 * 120.20635 * 0.02562 * 3 2 1 5 5 C 1.39224 * 119.97675 * 179.97438 * 4 3 2 6 6 N 1.38921 * 119.79701 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99614 * 180.02562 * 6 5 4 8 8 H 1.08993 * 109.47188 * 35.00018 * 7 6 5 9 9 C 1.53001 * 109.46989 * 274.99715 * 7 6 5 10 10 C 1.53002 * 109.46629 * 155.00437 * 7 6 5 11 11 N 1.46902 * 109.47010 * 304.99440 * 10 7 6 12 12 C 1.46904 * 110.99745 * 170.00357 * 11 10 7 13 13 C 1.46897 * 111.00188 * 293.95697 * 11 10 7 14 14 C 1.39725 * 120.40210 * 0.02562 * 5 4 3 15 15 C 1.36222 * 120.42952 * 359.95237 * 14 5 4 16 16 C 1.40850 * 120.01289 * 0.05019 * 15 14 5 17 17 C 1.40966 * 120.20224 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00470 * 154.24322 * 17 16 15 19 19 C 1.39846 * 119.99723 * 334.24497 * 17 16 15 20 20 N 1.30953 * 120.00024 * 343.32394 * 19 17 16 21 21 Si 1.86799 * 120.00134 * 163.33017 * 19 17 16 22 22 H 1.48497 * 109.47360 * 89.99480 * 21 19 17 23 23 H 1.48497 * 109.47445 * 209.99981 * 21 19 17 24 24 H 1.48509 * 109.47083 * 329.99876 * 21 19 17 25 25 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47212 * 300.00047 * 1 2 3 27 27 H 1.09002 * 109.46966 * 59.99899 * 1 2 3 28 28 H 1.07997 * 120.01721 * 359.70224 * 4 3 2 29 29 H 0.96998 * 119.99963 * 359.97438 * 6 5 4 30 30 H 1.08999 * 109.47118 * 300.00492 * 9 7 6 31 31 H 1.09000 * 109.47082 * 60.00362 * 9 7 6 32 32 H 1.08999 * 109.47209 * 180.02562 * 9 7 6 33 33 H 1.08999 * 109.47640 * 64.99991 * 10 7 6 34 34 H 1.09001 * 109.46959 * 184.99583 * 10 7 6 35 35 H 1.08999 * 109.47100 * 60.00322 * 12 11 10 36 36 H 1.09004 * 109.46640 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47301 * 300.00153 * 12 11 10 38 38 H 1.09004 * 109.47270 * 59.99984 * 13 11 10 39 39 H 1.08995 * 109.47340 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.47077 * 300.00158 * 13 11 10 41 41 H 1.07998 * 119.78232 * 179.97438 * 14 5 4 42 42 H 1.08001 * 119.99187 * 180.02562 * 15 14 5 43 43 H 0.97000 * 119.99680 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2974 2.3693 0.0005 5 6 1.9344 3.6072 0.0011 6 7 1.1784 4.7727 0.0011 7 6 1.8442 6.0776 0.0011 8 1 2.7591 6.0187 -0.5883 9 6 2.1879 6.4748 1.4381 10 6 0.9113 7.1260 -0.6085 11 7 0.4858 6.6856 -1.9438 12 6 -0.5893 7.5418 -2.4627 13 6 1.6230 6.6473 -2.8728 14 6 3.3295 3.6845 0.0005 15 6 4.0834 2.5499 0.0005 16 6 3.4574 1.2881 -0.0002 17 6 4.2336 0.1114 0.0003 18 1 3.8276 -0.8033 0.4063 19 6 5.5296 0.1285 -0.5250 20 7 5.9090 1.1134 -1.3001 21 14 6.7194 -1.2537 -0.1211 22 1 6.5896 -2.3308 -1.1351 23 1 8.1088 -0.7296 -0.1307 24 1 6.4057 -1.7998 1.2239 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2187 2.3170 -0.0039 29 1 0.2097 4.7224 0.0003 30 1 1.2729 6.5337 2.0275 31 1 2.8524 5.7279 1.8724 32 1 2.6829 7.4459 1.4382 33 1 0.0363 7.2488 0.0297 34 1 1.4376 8.0770 -0.6902 35 1 -0.2341 8.5700 -2.5305 36 1 -0.8851 7.1938 -3.4524 37 1 -1.4461 7.4970 -1.7903 38 1 2.3747 5.9522 -2.4986 39 1 1.2800 6.3185 -3.8537 40 1 2.0583 7.6432 -2.9555 41 1 3.8133 4.6501 0.0005 42 1 5.1613 2.6179 0.0005 43 1 6.8078 1.1251 -1.6647 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163776695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:18 Heat of formation + Delta-G solvation = -4.526377 kcal Electronic energy + Delta-G solvation = -22123.907789 eV Core-core repulsion = 18976.500353 eV Total energy + Delta-G solvation = -3147.407437 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.84497 -38.03514 -36.36117 -34.77344 -33.03956 -30.75369 -28.75598 -28.02650 -27.57860 -26.84929 -26.36909 -24.09606 -22.42860 -21.20996 -20.66537 -19.36210 -17.27824 -16.72922 -15.84823 -15.52267 -15.22234 -14.87294 -14.56254 -14.49562 -14.46202 -13.79277 -13.65996 -12.80689 -12.69968 -12.57097 -12.42127 -12.20133 -12.02226 -11.80231 -11.66773 -11.58961 -11.48534 -11.06232 -11.03867 -10.91347 -10.53863 -10.51577 -10.37066 -10.10267 -9.57998 -9.40963 -9.01925 -8.31251 -8.27969 -7.01867 -6.50154 -6.24925 -3.82754 3.00387 3.11271 3.23481 3.29431 3.41703 3.92264 4.18250 4.38020 4.65135 4.87317 4.91549 5.11940 5.29293 5.32203 5.50549 5.54987 5.62536 5.66044 5.75632 5.77275 5.82548 5.86799 5.94754 5.96368 6.06951 6.10785 6.24901 6.29468 6.45195 6.55410 6.87738 7.01073 7.05637 7.16930 7.24182 7.45012 7.62292 7.86951 8.07393 8.26243 8.51583 8.67312 8.84517 8.95914 9.14965 9.33051 10.53133 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.004723 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.850877 B = 5927.508499 C = 6559.809621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C 0.052 3.948 4 C -0.247 4.247 5 C 0.142 3.858 6 N -0.738 5.738 7 C 0.162 3.838 8 H 0.072 0.928 9 C -0.167 4.167 10 C 0.048 3.952 11 N -0.537 5.537 12 C 0.025 3.975 13 C 0.024 3.976 14 C -0.197 4.197 15 C -0.098 4.098 16 C 0.056 3.944 17 C -0.451 4.451 18 H 0.075 0.925 19 C 0.071 3.929 20 N -0.817 5.817 21 Si 0.902 3.098 22 H -0.274 1.274 23 H -0.280 1.280 24 H -0.264 1.264 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.095 0.905 29 H 0.386 0.614 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.020 0.980 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.020 0.980 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 10.869 0.231 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.225 6.225 3 C 0.007 3.993 4 C -0.270 4.270 5 C 0.044 3.956 6 N -0.371 5.371 7 C 0.055 3.945 8 H 0.090 0.910 9 C -0.227 4.227 10 C -0.081 4.081 11 N -0.260 5.260 12 C -0.123 4.123 13 C -0.124 4.124 14 C -0.219 4.219 15 C -0.118 4.118 16 C 0.053 3.947 17 C -0.482 4.482 18 H 0.093 0.907 19 C -0.142 4.142 20 N -0.446 5.446 21 Si 0.727 3.273 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.188 1.188 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.219 0.781 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.107 0.893 42 H 0.141 0.859 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.144 10.390 0.123 13.202 hybrid contribution 0.238 0.456 -0.093 0.523 sum -7.905 10.846 0.029 13.422 Atomic orbital electron populations 1.22700 0.81975 1.01471 0.99844 1.85989 1.18047 1.28427 1.90023 1.19005 0.92176 0.82085 1.06067 1.20038 0.97052 0.91510 1.18376 1.17047 0.90337 0.84830 1.03424 1.43738 1.06403 1.01291 1.85655 1.20590 0.95447 0.83804 0.94697 0.90969 1.22295 1.01676 1.00874 0.97817 1.22472 0.99095 0.96214 0.90303 1.61876 1.10164 1.51527 1.02429 1.22379 0.94871 0.94274 1.00791 1.22419 0.93607 0.99843 0.96501 1.20014 0.91395 0.97574 1.12922 1.20688 0.99449 0.90315 1.01381 1.16888 0.87039 0.94032 0.96731 1.19169 0.97211 0.96640 1.35226 0.90719 1.25729 0.98721 0.96576 0.93160 1.69866 1.19056 1.31299 1.24395 0.86426 0.79343 0.81584 0.79917 1.19942 1.20553 1.18825 0.90262 0.94361 0.94218 0.88734 0.78126 0.92976 0.91504 0.93070 0.90849 0.94334 0.96167 0.91533 0.91663 0.90338 0.91650 0.96190 0.89313 0.85869 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.81 101.05 0.99 1.64 16 2 O -0.31 -7.48 9.79 -18.73 -0.18 -7.67 16 3 C 0.05 1.33 6.71 -38.43 -0.26 1.07 16 4 C -0.25 -5.60 8.86 -39.29 -0.35 -5.94 16 5 C 0.14 3.06 6.64 -83.73 -0.56 2.51 16 6 N -0.74 -12.64 4.94 -52.07 -0.26 -12.90 16 7 C 0.16 2.35 2.03 -67.93 -0.14 2.21 16 8 H 0.07 1.17 5.10 -51.93 -0.26 0.90 16 9 C -0.17 -2.22 9.40 37.16 0.35 -1.87 16 10 C 0.05 0.57 4.52 -3.82 -0.02 0.55 16 11 N -0.54 -6.82 4.74 -251.25 -1.19 -8.01 16 12 C 0.03 0.25 9.57 60.07 0.57 0.83 16 13 C 0.02 0.31 9.32 60.06 0.56 0.87 16 14 C -0.20 -4.55 8.74 -39.75 -0.35 -4.90 16 15 C -0.10 -2.58 8.61 -39.32 -0.34 -2.92 16 16 C 0.06 1.56 5.58 -106.65 -0.59 0.97 16 17 C -0.45 -12.76 8.70 -37.95 -0.33 -13.09 16 18 H 0.07 2.12 7.66 -52.48 -0.40 1.72 16 19 C 0.07 1.90 5.15 -17.32 -0.09 1.81 16 20 N -0.82 -22.18 10.96 55.54 0.61 -21.57 16 21 Si 0.90 20.02 29.59 -169.99 -5.03 14.99 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 27 H 0.04 0.67 7.66 -51.93 -0.40 0.28 16 28 H 0.09 1.92 6.29 -52.49 -0.33 1.59 16 29 H 0.39 6.26 8.60 -40.82 -0.35 5.91 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.03 7.66 -51.93 -0.40 0.64 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 35 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 37 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 38 H 0.08 1.19 6.58 -51.93 -0.34 0.85 16 39 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 40 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 1.87 6.03 -52.49 -0.32 1.56 16 42 H 0.12 3.36 6.19 -52.49 -0.32 3.03 16 43 H 0.27 6.81 8.30 -40.82 -0.34 6.47 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -29.59 343.97 -8.29 -37.88 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.88 Total: 8.35 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -0.54 Total: -16.26 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.84 Total: -42.47 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.18 Total: -7.67 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.59 -8.29 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163776695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.350 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds