Wall clock time and date at job start Fri Apr 10 2020 17:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35675 * 117.00163 * 2 1 4 4 C 1.38042 * 120.20635 * 0.02562 * 3 2 1 5 5 C 1.39224 * 119.97675 * 179.97438 * 4 3 2 6 6 N 1.38921 * 119.79701 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99614 * 180.02562 * 6 5 4 8 8 H 1.08993 * 109.47188 * 35.00018 * 7 6 5 9 9 C 1.53001 * 109.46989 * 274.99715 * 7 6 5 10 10 C 1.53002 * 109.46629 * 155.00437 * 7 6 5 11 11 N 1.46902 * 109.47010 * 304.99440 * 10 7 6 12 12 C 1.46904 * 110.99745 * 170.00357 * 11 10 7 13 13 C 1.46897 * 111.00188 * 293.95697 * 11 10 7 14 14 C 1.39725 * 120.40210 * 0.02562 * 5 4 3 15 15 C 1.36222 * 120.42952 * 359.95237 * 14 5 4 16 16 C 1.40850 * 120.01289 * 0.05019 * 15 14 5 17 17 C 1.40966 * 120.20224 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00470 * 154.24322 * 17 16 15 19 19 C 1.39846 * 119.99723 * 334.24497 * 17 16 15 20 20 N 1.30953 * 120.00024 * 343.32394 * 19 17 16 21 21 Si 1.86799 * 120.00134 * 163.33017 * 19 17 16 22 22 H 1.48497 * 109.47360 * 89.99480 * 21 19 17 23 23 H 1.48497 * 109.47445 * 209.99981 * 21 19 17 24 24 H 1.48509 * 109.47083 * 329.99876 * 21 19 17 25 25 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47212 * 300.00047 * 1 2 3 27 27 H 1.09002 * 109.46966 * 59.99899 * 1 2 3 28 28 H 1.07997 * 120.01721 * 359.70224 * 4 3 2 29 29 H 0.96998 * 119.99963 * 359.97438 * 6 5 4 30 30 H 1.08999 * 109.47118 * 300.00492 * 9 7 6 31 31 H 1.09000 * 109.47082 * 60.00362 * 9 7 6 32 32 H 1.08999 * 109.47209 * 180.02562 * 9 7 6 33 33 H 1.08999 * 109.47640 * 64.99991 * 10 7 6 34 34 H 1.09001 * 109.46959 * 184.99583 * 10 7 6 35 35 H 1.08999 * 109.47100 * 60.00322 * 12 11 10 36 36 H 1.09004 * 109.46640 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47301 * 300.00153 * 12 11 10 38 38 H 1.09004 * 109.47270 * 59.99984 * 13 11 10 39 39 H 1.08995 * 109.47340 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.47077 * 300.00158 * 13 11 10 41 41 H 1.07998 * 119.78232 * 179.97438 * 14 5 4 42 42 H 1.08001 * 119.99187 * 180.02562 * 15 14 5 43 43 H 0.97000 * 119.99680 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2974 2.3693 0.0005 5 6 1.9344 3.6072 0.0011 6 7 1.1784 4.7727 0.0011 7 6 1.8442 6.0776 0.0011 8 1 2.7591 6.0187 -0.5883 9 6 2.1879 6.4748 1.4381 10 6 0.9113 7.1260 -0.6085 11 7 0.4858 6.6856 -1.9438 12 6 -0.5893 7.5418 -2.4627 13 6 1.6230 6.6473 -2.8728 14 6 3.3295 3.6845 0.0005 15 6 4.0834 2.5499 0.0005 16 6 3.4574 1.2881 -0.0002 17 6 4.2336 0.1114 0.0003 18 1 3.8276 -0.8033 0.4063 19 6 5.5296 0.1285 -0.5250 20 7 5.9090 1.1134 -1.3001 21 14 6.7194 -1.2537 -0.1211 22 1 6.5896 -2.3308 -1.1351 23 1 8.1088 -0.7296 -0.1307 24 1 6.4057 -1.7998 1.2239 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2187 2.3170 -0.0039 29 1 0.2097 4.7224 0.0003 30 1 1.2729 6.5337 2.0275 31 1 2.8524 5.7279 1.8724 32 1 2.6829 7.4459 1.4382 33 1 0.0363 7.2488 0.0297 34 1 1.4376 8.0770 -0.6902 35 1 -0.2341 8.5700 -2.5305 36 1 -0.8851 7.1938 -3.4524 37 1 -1.4461 7.4970 -1.7903 38 1 2.3747 5.9522 -2.4986 39 1 1.2800 6.3185 -3.8537 40 1 2.0583 7.6432 -2.9555 41 1 3.8133 4.6501 0.0005 42 1 5.1613 2.6179 0.0005 43 1 6.8078 1.1251 -1.6647 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163776695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:17 Heat of formation + Delta-G solvation = -23.954691 kcal Electronic energy + Delta-G solvation = -22124.750264 eV Core-core repulsion = 18976.500353 eV Total energy + Delta-G solvation = -3148.249911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53890 -39.33871 -37.90515 -36.37052 -34.74851 -32.34684 -30.59776 -29.72806 -28.47693 -27.99916 -27.80913 -25.92342 -23.56083 -22.79815 -22.34645 -20.81164 -19.18750 -18.45297 -17.33108 -16.79908 -16.59608 -16.32358 -16.17341 -15.96233 -15.71455 -15.42493 -15.04107 -14.44803 -14.16505 -13.93909 -13.68703 -13.47328 -13.30324 -13.19537 -13.01459 -12.75158 -12.72766 -12.61074 -12.58172 -12.33621 -12.29265 -12.08914 -11.75952 -11.66091 -11.34444 -11.28280 -10.94031 -10.07673 -9.22856 -8.87020 -8.43848 -8.05632 -5.84172 1.17165 1.18813 1.41370 1.53991 1.61074 2.33692 2.81059 2.92721 3.00120 3.15884 3.84763 3.88505 4.20524 4.29719 4.43172 4.44440 4.50244 4.51519 4.52896 4.56856 4.66450 4.68598 4.76852 4.77021 4.81509 4.88116 5.03180 5.04479 5.06331 5.13633 5.30929 5.38085 5.43746 5.51882 5.69594 5.95586 6.08345 6.14752 6.16874 6.36404 6.57258 6.94230 6.98740 7.15276 7.29619 7.47116 8.59588 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.004723 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.850877 B = 5927.508499 C = 6559.809621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.340 6.340 3 C 0.048 3.952 4 C -0.257 4.257 5 C 0.170 3.830 6 N -0.724 5.724 7 C 0.157 3.843 8 H 0.054 0.946 9 C -0.161 4.161 10 C 0.056 3.944 11 N -0.557 5.557 12 C 0.027 3.973 13 C 0.028 3.972 14 C -0.208 4.208 15 C -0.109 4.109 16 C 0.006 3.994 17 C -0.490 4.490 18 H 0.058 0.942 19 C 0.029 3.971 20 N -0.851 5.851 21 Si 0.972 3.028 22 H -0.268 1.268 23 H -0.267 1.267 24 H -0.265 1.265 25 H 0.109 0.891 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.123 0.877 29 H 0.395 0.605 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.031 0.969 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 12.572 0.459 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.255 6.255 3 C 0.002 3.998 4 C -0.280 4.280 5 C 0.068 3.932 6 N -0.356 5.356 7 C 0.051 3.949 8 H 0.072 0.928 9 C -0.220 4.220 10 C -0.073 4.073 11 N -0.281 5.281 12 C -0.121 4.121 13 C -0.120 4.120 14 C -0.230 4.230 15 C -0.129 4.129 16 C 0.003 3.997 17 C -0.522 4.522 18 H 0.076 0.924 19 C -0.180 4.180 20 N -0.481 5.481 21 Si 0.794 3.206 22 H -0.193 1.193 23 H -0.191 1.191 24 H -0.189 1.189 25 H 0.128 0.872 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.140 0.860 29 H 0.230 0.770 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.037 12.142 0.352 15.757 hybrid contribution 0.577 0.090 -0.172 0.608 sum -9.461 12.232 0.180 15.464 Atomic orbital electron populations 1.23050 0.78733 1.03976 1.00882 1.85934 1.21471 1.28181 1.89899 1.19197 0.92005 0.83511 1.05040 1.20282 0.98355 0.90927 1.18456 1.17146 0.90089 0.86194 0.99770 1.43812 1.06729 1.01074 1.84028 1.20787 0.95376 0.83142 0.95615 0.92827 1.22205 1.01932 1.01318 0.96551 1.22394 0.99234 0.95536 0.90095 1.61858 1.10514 1.52975 1.02710 1.22403 0.94233 0.94362 1.01079 1.22318 0.93294 0.99885 0.96532 1.20107 0.92255 0.97281 1.13404 1.20602 0.98831 0.91193 1.02315 1.17219 0.88661 0.94448 0.99381 1.19254 0.98979 0.96514 1.37428 0.92378 1.26473 0.99798 0.99223 0.92527 1.69927 1.19685 1.33132 1.25331 0.85370 0.77347 0.78440 0.79442 1.19349 1.19146 1.18889 0.87241 0.92882 0.93320 0.85952 0.77024 0.91684 0.94171 0.90570 0.89125 0.92640 0.95043 0.91372 0.90536 0.93280 0.91485 0.94720 0.87721 0.87884 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.81 113.37 1.11 2.08 16 2 O -0.34 -16.59 9.79 -89.92 -0.88 -17.47 16 3 C 0.05 2.51 6.71 23.02 0.15 2.66 16 4 C -0.26 -11.47 8.86 22.46 0.20 -11.27 16 5 C 0.17 7.18 6.64 38.62 0.26 7.44 16 6 N -0.72 -23.28 4.94 -318.64 -1.57 -24.86 16 7 C 0.16 4.20 2.03 44.99 0.09 4.29 16 8 H 0.05 1.67 5.10 -2.39 -0.01 1.66 16 9 C -0.16 -3.86 9.40 71.98 0.68 -3.19 16 10 C 0.06 1.14 4.52 86.30 0.39 1.53 16 11 N -0.56 -12.56 4.74 -948.82 -4.50 -17.06 16 12 C 0.03 0.45 9.57 127.69 1.22 1.67 16 13 C 0.03 0.68 9.32 127.69 1.19 1.87 16 14 C -0.21 -9.79 8.74 22.16 0.19 -9.60 16 15 C -0.11 -6.01 8.61 22.44 0.19 -5.81 16 16 C 0.01 0.35 5.58 -21.18 -0.12 0.23 16 17 C -0.49 -29.25 8.70 23.33 0.20 -29.05 16 18 H 0.06 3.50 7.66 -2.91 -0.02 3.48 16 19 C 0.03 1.63 5.15 85.21 0.44 2.07 16 20 N -0.85 -48.25 10.96 21.82 0.24 -48.01 16 21 Si 0.97 42.58 29.59 68.60 2.03 44.61 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 26 H 0.05 1.64 7.67 -2.39 -0.02 1.62 16 27 H 0.05 1.56 7.66 -2.39 -0.02 1.54 16 28 H 0.12 4.68 6.29 -2.91 -0.02 4.66 16 29 H 0.40 11.57 8.60 -92.71 -0.80 10.77 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.18 7.66 -2.39 -0.02 1.16 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.58 8.06 -2.39 -0.02 1.56 16 34 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 35 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 1.12 8.12 -2.38 -0.02 1.10 16 37 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 38 H 0.05 1.47 6.58 -2.39 -0.02 1.45 16 39 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 40 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.10 4.49 6.03 -2.91 -0.02 4.47 16 42 H 0.10 5.98 6.19 -2.91 -0.02 5.96 16 43 H 0.28 14.42 8.30 -92.71 -0.77 13.66 16 Total: -1.00 -67.65 343.97 1.72 -65.93 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.20 Total: 31.93 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 6.20 Total: -35.07 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -5.84 Total: -89.93 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.88 Total: -17.47 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -67.65 1.72 -65.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163776695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.980 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds