Wall clock time and date at job start Fri Apr 10 2020 17:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46806 * 2 1 4 4 C 1.46499 * 120.00299 * 269.99781 * 3 2 1 5 5 C 1.50696 * 109.47339 * 270.00182 * 4 3 2 6 6 H 1.08001 * 120.00080 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00005 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00036 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99898 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46928 * 60.00502 * 9 7 5 11 11 H 1.48508 * 109.46771 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47466 * 300.00143 * 9 7 5 13 13 C 1.38996 * 119.99944 * 90.00710 * 3 2 1 14 14 C 1.39026 * 119.66899 * 4.99396 * 13 3 2 15 15 C 1.38450 * 119.22313 * 180.02562 * 14 13 3 16 16 C 1.38639 * 118.56976 * 0.02562 * 15 14 13 17 17 C 1.38737 * 119.27338 * 359.97438 * 16 15 14 18 18 O 1.35675 * 119.63687 * 179.97438 * 17 16 15 19 19 C 1.42901 * 116.99893 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47046 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.47268 * 175.00265 * 20 19 18 22 22 C 1.53002 * 109.46851 * 294.99943 * 20 19 18 23 23 N 1.32350 * 120.72432 * 0.25988 * 17 16 15 24 24 H 1.08991 * 109.46913 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46856 * 299.99999 * 1 2 3 26 26 H 1.08996 * 109.46737 * 59.99266 * 1 2 3 27 27 H 1.08999 * 109.47063 * 240.00480 * 2 1 3 28 28 H 1.08996 * 109.47421 * 120.00426 * 2 1 3 29 29 H 1.09000 * 109.46869 * 30.00741 * 4 3 2 30 30 H 1.09002 * 109.46681 * 150.00553 * 4 3 2 31 31 H 0.96997 * 120.00060 * 179.97438 * 8 7 5 32 32 H 1.08006 * 120.39145 * 0.02562 * 14 13 3 33 33 H 1.08007 * 120.72040 * 179.97438 * 15 14 13 34 34 H 1.07999 * 120.36313 * 180.02562 * 16 15 14 35 35 H 1.08999 * 109.47144 * 300.00268 * 19 18 17 36 36 H 1.08998 * 109.47043 * 59.99867 * 19 18 17 37 37 H 1.09002 * 109.47459 * 54.99697 * 20 19 18 38 38 H 1.08997 * 109.46963 * 59.99559 * 21 20 19 39 39 H 1.08996 * 109.46941 * 179.97438 * 21 20 19 40 40 H 1.09007 * 109.46531 * 299.99684 * 21 20 19 41 41 H 1.08996 * 109.47200 * 60.00175 * 22 20 19 42 42 H 1.09006 * 109.47106 * 179.97438 * 22 20 19 43 43 H 1.09000 * 109.47085 * 299.99607 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7037 6 1 4.3427 1.2304 -1.0962 7 6 4.1491 2.3899 -2.8779 8 7 3.3490 3.1259 -3.6180 9 14 5.9131 2.0958 -3.4175 10 1 6.1402 0.6391 -3.5949 11 1 6.1606 2.7961 -4.7035 12 1 6.8410 2.6191 -2.3829 13 6 2.2501 2.0364 1.2038 14 6 2.1167 1.3431 2.4014 15 6 2.3492 2.0049 3.5950 16 6 2.7083 3.3433 3.5520 17 6 2.8238 3.9756 2.3225 18 8 3.1743 5.2853 2.2719 19 6 3.2761 5.8800 0.9765 20 6 3.6789 7.3490 1.1200 21 6 3.9092 7.9525 -0.2670 22 6 2.5627 8.1167 1.8312 23 7 2.5904 3.3166 1.1987 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.5817 1.6878 -2.0283 30 1 2.0956 3.1411 -1.1382 31 1 3.6751 3.5165 -4.4438 32 1 1.8350 0.3005 2.4007 33 1 2.2522 1.4899 4.5395 34 1 2.8969 3.8876 4.4656 35 1 4.0302 5.3522 0.3926 36 1 2.3131 5.8146 0.4700 37 1 4.5968 7.4188 1.7036 38 1 2.9913 7.8827 -0.8506 39 1 4.1957 8.9992 -0.1647 40 1 4.7044 7.4055 -0.7737 41 1 2.3986 7.6868 2.8192 42 1 2.8498 9.1632 1.9338 43 1 1.6448 8.0470 1.2475 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:28 Heat of formation + Delta-G solvation = -26.718859 kcal Electronic energy + Delta-G solvation = -22267.621951 eV Core-core repulsion = 19119.252177 eV Total energy + Delta-G solvation = -3148.369775 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45584 -39.55822 -37.58264 -36.04845 -34.85151 -33.35744 -31.53663 -30.89059 -28.46705 -28.06940 -27.24684 -25.11282 -24.56310 -23.28324 -21.85981 -21.08274 -19.16864 -18.63133 -17.96781 -17.21009 -16.93270 -16.55542 -16.42335 -15.79993 -15.72246 -15.05233 -14.83180 -14.58106 -14.26816 -14.01088 -13.95719 -13.50894 -13.49033 -13.26431 -13.11158 -13.01948 -12.87410 -12.65025 -12.40702 -12.33447 -12.18268 -12.05398 -11.81294 -11.77322 -11.66402 -11.56101 -10.81903 -10.62881 -10.24726 -9.89690 -8.42613 -8.01328 -6.33180 0.57479 0.71370 1.33264 1.35806 1.43535 2.11996 2.28843 2.42969 3.08802 3.11585 3.69188 3.81399 3.87468 4.10995 4.12854 4.25294 4.35854 4.42173 4.46885 4.50510 4.53724 4.61170 4.73593 4.74707 4.79721 4.90745 4.93292 4.98384 5.00353 5.07776 5.11908 5.18689 5.28400 5.33673 5.36997 5.37731 5.49945 5.66215 5.69638 6.08687 6.19644 6.44570 6.65460 6.83386 7.33481 7.45697 8.86144 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.007761 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.341198 B = 3606.977727 C = 5602.455875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.117 3.883 3 N -0.602 5.602 4 C 0.277 3.723 5 C -0.533 4.533 6 H 0.044 0.956 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.957 3.043 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.424 3.576 14 C -0.289 4.289 15 C 0.005 3.995 16 C -0.269 4.269 17 C 0.334 3.666 18 O -0.311 6.311 19 C 0.086 3.914 20 C -0.089 4.089 21 C -0.142 4.142 22 C -0.138 4.138 23 N -0.620 5.620 24 H 0.094 0.906 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.006 0.994 30 H 0.009 0.991 31 H 0.265 0.735 32 H 0.154 0.846 33 H 0.180 0.820 34 H 0.153 0.847 35 H 0.033 0.967 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 1.328 13.175 13.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.005 4.005 3 N -0.311 5.311 4 C 0.156 3.844 5 C -0.572 4.572 6 H 0.062 0.938 7 C -0.186 4.186 8 N -0.565 5.565 9 Si 0.782 3.218 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.189 3.811 14 C -0.314 4.314 15 C -0.020 4.020 16 C -0.292 4.292 17 C 0.154 3.846 18 O -0.219 6.219 19 C 0.010 3.990 20 C -0.107 4.107 21 C -0.200 4.200 22 C -0.195 4.195 23 N -0.353 5.353 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.172 0.828 33 H 0.197 0.803 34 H 0.171 0.829 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.717 1.935 12.209 12.657 hybrid contribution 0.783 -0.389 -0.619 1.072 sum -1.933 1.546 11.590 11.851 Atomic orbital electron populations 1.22119 0.95073 1.03104 1.01236 1.21579 0.94774 0.80982 1.03187 1.47080 1.67241 1.13582 1.03227 1.18584 0.94284 0.91847 0.79711 1.21646 0.97952 1.31447 1.06186 0.93773 1.25714 1.01677 0.94726 0.96437 1.70039 1.37416 1.34301 1.14718 0.85635 0.79919 0.78820 0.77428 1.18991 1.20212 1.20530 1.18399 0.88551 0.86782 0.87372 1.21528 1.16331 1.02547 0.90979 1.21469 0.89755 0.92011 0.98727 1.20936 1.15830 0.96905 0.95558 1.19947 0.90418 0.84249 0.89953 1.86128 1.83220 1.20397 1.32129 1.22561 1.00119 0.94000 0.82272 1.21180 1.00623 0.90373 0.98560 1.21758 1.01603 1.01812 0.94781 1.21761 0.97138 1.00495 1.00100 1.66700 1.26258 1.11056 1.31331 0.88768 0.92675 0.94619 0.91382 0.88750 0.97604 0.97335 0.92582 0.82815 0.80253 0.82918 0.94845 0.94082 0.89652 0.93092 0.89168 0.93636 0.92529 0.90186 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 10.24 71.98 0.74 -3.68 16 2 C 0.12 3.95 5.97 86.38 0.52 4.46 16 3 N -0.60 -26.73 2.57 -708.30 -1.82 -28.55 16 4 C 0.28 15.23 5.23 85.63 0.45 15.67 16 5 C -0.53 -31.12 9.39 25.60 0.24 -30.88 16 6 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 7 C 0.01 0.78 5.46 84.65 0.46 1.24 16 8 N -0.92 -55.93 13.29 21.45 0.28 -55.65 16 9 Si 0.96 45.49 29.54 68.60 2.03 47.51 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 C 0.42 18.11 7.37 133.02 0.98 19.09 16 14 C -0.29 -9.29 9.27 22.51 0.21 -9.08 16 15 C 0.01 0.14 10.16 22.42 0.23 0.37 16 16 C -0.27 -8.44 10.04 22.49 0.23 -8.22 16 17 C 0.33 13.46 7.48 84.73 0.63 14.09 16 18 O -0.31 -11.92 9.65 -89.92 -0.87 -12.79 16 19 C 0.09 3.32 4.69 71.98 0.34 3.66 16 20 C -0.09 -2.54 3.16 -10.79 -0.03 -2.57 16 21 C -0.14 -3.80 9.19 71.98 0.66 -3.14 16 22 C -0.14 -3.31 9.09 71.98 0.65 -2.65 16 23 N -0.62 -28.91 7.92 -306.31 -2.43 -31.34 16 24 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 28 H 0.09 2.60 5.97 -2.39 -0.01 2.58 16 29 H 0.01 0.34 8.07 -2.39 -0.02 0.32 16 30 H 0.01 0.53 7.29 -2.39 -0.02 0.51 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.15 3.98 6.01 -2.91 -0.02 3.96 16 33 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 35 H 0.03 1.50 8.11 -2.39 -0.02 1.48 16 36 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.06 1.40 7.82 -2.39 -0.02 1.38 16 42 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -70.61 355.97 4.45 -66.15 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.96 Total: 16.29 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 6.30 Total: -1.63 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -3.96 Total: -115.54 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.87 Total: -12.79 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.61 4.45 -66.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.435 kcal (2) G-P(sol) polarization free energy of solvation -70.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds