Wall clock time and date at job start Fri Apr 10 2020 17:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46497 * 109.46937 * 2 1 4 4 N 1.28718 * 125.86716 * 269.97091 * 3 2 1 5 5 N 1.28634 * 110.17545 * 179.74858 * 4 3 2 6 6 C 1.33765 * 108.88813 * 0.45133 * 5 4 3 7 7 C 1.50703 * 126.75265 * 179.82692 * 6 5 4 8 8 C 1.35312 * 125.86977 * 90.00208 * 3 2 1 9 9 C 1.50697 * 126.91396 * 0.02562 * 8 3 2 10 10 N 1.46896 * 109.47611 * 89.97851 * 9 8 3 11 11 C 1.46851 * 110.99870 * 45.78879 * 10 9 8 12 12 C 1.53039 * 109.52355 * 185.84039 * 11 10 9 13 13 C 1.53116 * 109.27727 * 300.82427 * 12 11 10 14 14 C 1.53122 * 109.16488 * 57.65521 * 13 12 11 15 15 H 1.08999 * 109.50193 * 62.28484 * 14 13 12 16 16 C 1.50697 * 109.50466 * 182.40547 * 14 13 12 17 17 H 1.07995 * 120.00613 * 119.80672 * 16 14 13 18 18 C 1.37887 * 119.99915 * 299.80040 * 16 14 13 19 19 N 1.31516 * 119.99657 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 119.99909 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47195 * 90.00310 * 20 18 16 22 22 H 1.48495 * 109.47067 * 210.00161 * 20 18 16 23 23 H 1.48502 * 109.47066 * 330.00007 * 20 18 16 24 24 C 1.46846 * 111.00242 * 170.00343 * 10 9 8 25 25 H 1.08994 * 109.46802 * 59.99832 * 1 2 3 26 26 H 1.08998 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46849 * 300.00239 * 1 2 3 28 28 H 1.08998 * 109.46849 * 239.99761 * 2 1 3 29 29 H 1.09002 * 109.46564 * 119.99910 * 2 1 3 30 30 H 1.09002 * 109.47152 * 269.68649 * 7 6 5 31 31 H 1.09001 * 109.46980 * 149.68749 * 7 6 5 32 32 H 1.09004 * 109.47113 * 29.68730 * 7 6 5 33 33 H 1.09000 * 109.47373 * 209.98515 * 9 8 3 34 34 H 1.09009 * 109.46975 * 329.97985 * 9 8 3 35 35 H 1.08995 * 109.46544 * 305.85989 * 11 10 9 36 36 H 1.09004 * 109.45637 * 65.82888 * 11 10 9 37 37 H 1.08999 * 109.49698 * 180.88604 * 12 11 10 38 38 H 1.08997 * 109.53435 * 60.78274 * 12 11 10 39 39 H 1.09008 * 109.52333 * 297.74963 * 13 12 11 40 40 H 1.08999 * 109.57766 * 177.59460 * 13 12 11 41 41 H 0.96996 * 119.99423 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.45925 * 294.17482 * 24 10 9 43 43 H 1.08999 * 109.46059 * 54.14697 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2702 2.0921 -1.0431 5 7 2.6778 3.2615 -0.6952 6 6 2.7080 3.3300 0.6403 7 6 3.1268 4.5140 1.4733 8 6 2.2827 2.1287 1.0965 9 6 2.1346 1.7080 2.5359 10 7 3.3921 1.1097 3.0032 11 6 4.5447 1.9257 2.6004 12 6 5.8399 1.2016 2.9750 13 6 5.8650 0.9603 4.4869 14 6 4.6291 0.1497 4.8871 15 1 4.6567 -0.8226 4.3953 16 6 4.6153 -0.0417 6.3818 17 1 3.7905 0.3366 6.9672 18 6 5.6560 -0.7002 7.0021 19 7 6.6607 -1.1607 6.2893 20 14 5.6386 -0.9382 8.8547 21 1 4.9610 -2.2181 9.1831 22 1 7.0336 -0.9722 9.3625 23 1 4.9073 0.1866 9.4914 24 6 3.3690 0.9043 4.4570 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.1966 4.4566 1.6744 31 1 2.5791 4.5071 2.4157 32 1 2.9077 5.4346 0.9324 33 1 1.8977 2.5792 3.1467 34 1 1.3309 0.9763 2.6198 35 1 4.5171 2.0863 1.5227 36 1 4.5052 2.8874 3.1120 37 1 6.6949 1.8147 2.6901 38 1 5.8872 0.2459 2.4532 39 1 5.8576 1.9173 5.0087 40 1 6.7655 0.4070 4.7535 41 1 7.3929 -1.6235 6.7257 42 1 3.3351 1.8708 4.9598 43 1 2.4875 0.3230 4.7277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:59 Heat of formation + Delta-G solvation = 86.022743 kcal Electronic energy + Delta-G solvation = -22705.168554 eV Core-core repulsion = 19593.980373 eV Total energy + Delta-G solvation = -3111.188181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.26085 -38.36967 -35.63363 -34.44361 -32.55510 -31.67049 -30.69988 -29.77230 -28.03667 -25.80786 -25.01267 -24.46616 -22.22603 -21.66985 -21.12946 -20.05971 -18.66750 -17.11381 -16.50707 -16.26622 -15.17488 -14.95546 -14.75274 -14.40653 -14.10205 -13.60332 -13.39382 -13.30414 -13.10360 -12.70001 -12.55008 -12.48201 -12.27718 -12.11408 -11.92254 -11.70295 -11.51059 -11.39003 -10.99281 -10.75246 -10.71462 -10.56689 -10.18557 -9.92877 -9.87016 -9.53163 -9.13293 -8.85653 -8.76081 -8.34467 -7.80002 -6.01920 -4.08538 1.63748 2.40252 2.59916 3.27682 3.35044 3.37294 4.30990 4.33738 4.47101 4.50907 4.66371 4.78253 4.96273 5.00037 5.11120 5.28488 5.32069 5.44245 5.50779 5.65332 5.66868 5.70596 5.76527 5.83404 5.91269 6.01641 6.07008 6.19243 6.30700 6.35260 6.43767 6.65673 6.67646 6.69195 6.87247 7.14935 7.30572 7.53237 7.64038 7.72297 8.01347 8.12158 8.41886 8.61750 8.95449 9.56215 11.04058 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.026267 B = 0.004442 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.726475 B = 6301.596389 C = 6719.857294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.277 5.277 4 N -0.094 5.094 5 N -0.273 5.273 6 C -0.023 4.023 7 C -0.068 4.068 8 C 0.001 3.999 9 C 0.122 3.878 10 N -0.534 5.534 11 C 0.060 3.940 12 C -0.117 4.117 13 C -0.110 4.110 14 C 0.057 3.943 15 H 0.033 0.967 16 C -0.516 4.516 17 H 0.054 0.946 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.068 3.932 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.091 0.909 41 H 0.260 0.740 42 H 0.024 0.976 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.764 4.544 -9.224 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.014 4.014 3 N -0.071 5.071 4 N -0.072 5.072 5 N -0.139 5.139 6 C -0.162 4.162 7 C -0.126 4.126 8 C -0.132 4.132 9 C -0.007 4.007 10 N -0.259 5.259 11 C -0.068 4.068 12 C -0.155 4.155 13 C -0.148 4.148 14 C 0.038 3.962 15 H 0.052 0.948 16 C -0.555 4.555 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.059 4.059 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.548 3.992 -10.995 15.099 hybrid contribution -0.081 0.380 2.458 2.488 sum -9.629 4.372 -8.537 13.591 Atomic orbital electron populations 1.22151 0.93282 1.03827 1.03302 1.22144 0.95898 0.76853 1.06474 1.47231 1.42362 1.13245 1.04266 1.78213 1.17944 0.99018 1.12026 1.74993 1.16440 1.10610 1.11873 1.21734 1.06339 0.96583 0.91510 1.20152 1.01920 0.93211 0.97337 1.21851 1.06939 0.92535 0.91843 1.20571 0.94927 0.98865 0.86345 1.62227 1.00206 1.47224 1.16262 1.22189 0.91360 0.94350 0.98865 1.21677 0.94325 0.99460 1.00036 1.21658 1.03634 0.99143 0.90411 1.18650 0.88182 0.94318 0.95060 0.94839 1.21120 1.05904 1.36402 0.92057 0.92804 1.24930 0.95511 0.95384 0.97932 1.69891 1.09545 1.38086 1.35095 0.86629 0.77203 0.78495 0.85861 1.20715 1.21269 1.19989 1.22362 1.01716 0.98920 0.82875 0.91601 0.89673 0.91658 0.87739 0.86743 0.90453 0.90977 0.90791 0.92370 0.89888 0.92311 0.95258 0.93500 0.92379 0.95044 0.89116 0.93014 0.95814 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.24 37.16 0.38 -0.93 16 2 C 0.11 1.07 6.75 -4.04 -0.03 1.04 16 3 N -0.28 -3.80 3.34 -57.05 -0.19 -3.99 16 4 N -0.09 -1.50 13.17 60.35 0.79 -0.70 16 5 N -0.27 -4.55 12.41 33.29 0.41 -4.13 16 6 C -0.02 -0.33 5.89 -82.78 -0.49 -0.82 16 7 C -0.07 -0.81 9.21 36.01 0.33 -0.47 16 8 C 0.00 0.02 5.12 -82.09 -0.42 -0.40 16 9 C 0.12 1.67 5.17 -4.98 -0.03 1.65 16 10 N -0.53 -8.99 4.80 -236.11 -1.13 -10.12 16 11 C 0.06 1.03 4.00 -3.83 -0.02 1.02 16 12 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 13 C -0.11 -2.52 5.03 -26.61 -0.13 -2.66 16 14 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 15 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 16 C -0.52 -13.54 8.56 -34.44 -0.29 -13.84 16 17 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 18 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 19 N -0.89 -24.71 11.36 55.43 0.63 -24.08 16 20 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.07 1.31 4.65 -3.83 -0.02 1.30 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.11 1.14 7.72 -51.93 -0.40 0.74 16 30 H 0.08 0.92 7.17 -51.93 -0.37 0.55 16 31 H 0.07 0.77 7.31 -51.93 -0.38 0.39 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.75 7.25 -51.93 -0.38 0.38 16 34 H 0.08 1.00 7.81 -51.92 -0.41 0.60 16 35 H 0.06 1.01 5.64 -51.93 -0.29 0.72 16 36 H 0.03 0.49 7.07 -51.93 -0.37 0.12 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.03 0.72 8.14 -51.92 -0.42 0.29 16 40 H 0.09 2.35 6.16 -51.93 -0.32 2.03 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -29.68 335.94 -7.73 -37.41 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.11 Total: -1.28 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -1.17 Total: -13.79 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.51 Total: -43.02 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.68 -7.73 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.429 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds