Wall clock time and date at job start Fri Apr 10 2020 17:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46497 * 109.46937 * 2 1 4 4 N 1.28718 * 125.86716 * 269.97091 * 3 2 1 5 5 N 1.28634 * 110.17545 * 179.74858 * 4 3 2 6 6 C 1.33765 * 108.88813 * 0.45133 * 5 4 3 7 7 C 1.50703 * 126.75265 * 179.82692 * 6 5 4 8 8 C 1.35312 * 125.86977 * 90.00208 * 3 2 1 9 9 C 1.50697 * 126.91396 * 0.02562 * 8 3 2 10 10 N 1.46896 * 109.47611 * 89.97851 * 9 8 3 11 11 C 1.46851 * 110.99870 * 45.78879 * 10 9 8 12 12 C 1.53039 * 109.52355 * 185.84039 * 11 10 9 13 13 C 1.53116 * 109.27727 * 300.82427 * 12 11 10 14 14 C 1.53122 * 109.16488 * 57.65521 * 13 12 11 15 15 H 1.08999 * 109.50193 * 62.28484 * 14 13 12 16 16 C 1.50697 * 109.50466 * 182.40547 * 14 13 12 17 17 H 1.07995 * 120.00613 * 119.80672 * 16 14 13 18 18 C 1.37887 * 119.99915 * 299.80040 * 16 14 13 19 19 N 1.31516 * 119.99657 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 119.99909 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47195 * 90.00310 * 20 18 16 22 22 H 1.48495 * 109.47067 * 210.00161 * 20 18 16 23 23 H 1.48502 * 109.47066 * 330.00007 * 20 18 16 24 24 C 1.46846 * 111.00242 * 170.00343 * 10 9 8 25 25 H 1.08994 * 109.46802 * 59.99832 * 1 2 3 26 26 H 1.08998 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46849 * 300.00239 * 1 2 3 28 28 H 1.08998 * 109.46849 * 239.99761 * 2 1 3 29 29 H 1.09002 * 109.46564 * 119.99910 * 2 1 3 30 30 H 1.09002 * 109.47152 * 269.68649 * 7 6 5 31 31 H 1.09001 * 109.46980 * 149.68749 * 7 6 5 32 32 H 1.09004 * 109.47113 * 29.68730 * 7 6 5 33 33 H 1.09000 * 109.47373 * 209.98515 * 9 8 3 34 34 H 1.09009 * 109.46975 * 329.97985 * 9 8 3 35 35 H 1.08995 * 109.46544 * 305.85989 * 11 10 9 36 36 H 1.09004 * 109.45637 * 65.82888 * 11 10 9 37 37 H 1.08999 * 109.49698 * 180.88604 * 12 11 10 38 38 H 1.08997 * 109.53435 * 60.78274 * 12 11 10 39 39 H 1.09008 * 109.52333 * 297.74963 * 13 12 11 40 40 H 1.08999 * 109.57766 * 177.59460 * 13 12 11 41 41 H 0.96996 * 119.99423 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.45925 * 294.17482 * 24 10 9 43 43 H 1.08999 * 109.46059 * 54.14697 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2702 2.0921 -1.0431 5 7 2.6778 3.2615 -0.6952 6 6 2.7080 3.3300 0.6403 7 6 3.1268 4.5140 1.4733 8 6 2.2827 2.1287 1.0965 9 6 2.1346 1.7080 2.5359 10 7 3.3921 1.1097 3.0032 11 6 4.5447 1.9257 2.6004 12 6 5.8399 1.2016 2.9750 13 6 5.8650 0.9603 4.4869 14 6 4.6291 0.1497 4.8871 15 1 4.6567 -0.8226 4.3953 16 6 4.6153 -0.0417 6.3818 17 1 3.7905 0.3366 6.9672 18 6 5.6560 -0.7002 7.0021 19 7 6.6607 -1.1607 6.2893 20 14 5.6386 -0.9382 8.8547 21 1 4.9610 -2.2181 9.1831 22 1 7.0336 -0.9722 9.3625 23 1 4.9073 0.1866 9.4914 24 6 3.3690 0.9043 4.4570 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.1966 4.4566 1.6744 31 1 2.5791 4.5071 2.4157 32 1 2.9077 5.4346 0.9324 33 1 1.8977 2.5792 3.1467 34 1 1.3309 0.9763 2.6198 35 1 4.5171 2.0863 1.5227 36 1 4.5052 2.8874 3.1120 37 1 6.6949 1.8147 2.6901 38 1 5.8872 0.2459 2.4532 39 1 5.8576 1.9173 5.0087 40 1 6.7655 0.4070 4.7535 41 1 7.3929 -1.6235 6.7257 42 1 3.3351 1.8708 4.9598 43 1 2.4875 0.3230 4.7277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:06:58 Heat of formation + Delta-G solvation = 67.191660 kcal Electronic energy + Delta-G solvation = -22705.985131 eV Core-core repulsion = 19593.980373 eV Total energy + Delta-G solvation = -3112.004758 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.35375 -39.85933 -36.57895 -36.02535 -34.15672 -32.95009 -31.79773 -31.40595 -29.12055 -27.02244 -26.88200 -25.37303 -23.69302 -23.26765 -22.15630 -21.25408 -20.31491 -18.48663 -17.99606 -17.48149 -16.76467 -16.19787 -15.94950 -15.86721 -15.25645 -14.95811 -14.57021 -14.54023 -14.33742 -14.24241 -13.74759 -13.64722 -13.44805 -13.29875 -13.09248 -12.84077 -12.75238 -12.69616 -12.50705 -12.49661 -12.28391 -11.87270 -11.70943 -11.64510 -11.37009 -11.00621 -10.83958 -10.63892 -10.36161 -9.97821 -9.13939 -8.04951 -6.18475 0.54702 1.43848 1.44228 1.45942 1.49253 1.54834 2.45787 3.10582 3.23279 3.31410 3.57711 3.78559 3.90650 3.96098 4.15445 4.19775 4.27667 4.31489 4.39241 4.53413 4.63092 4.66984 4.72497 4.75414 4.78337 4.82708 4.90174 4.93961 4.98875 5.09034 5.10250 5.14993 5.19727 5.35797 5.37969 5.53616 5.66392 5.67289 5.96130 6.12525 6.22071 6.22678 6.47035 6.95212 7.49774 7.49940 8.99743 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.026267 B = 0.004442 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.726475 B = 6301.596389 C = 6719.857294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.270 5.270 4 N -0.114 5.114 5 N -0.304 5.304 6 C -0.027 4.027 7 C -0.068 4.068 8 C -0.005 4.005 9 C 0.128 3.872 10 N -0.540 5.540 11 C 0.071 3.929 12 C -0.111 4.111 13 C -0.102 4.102 14 C 0.054 3.946 15 H -0.003 1.003 16 C -0.531 4.531 17 H 0.057 0.943 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.951 3.049 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 C 0.083 3.917 25 H 0.058 0.942 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.027 0.973 40 H 0.054 0.946 41 H 0.258 0.742 42 H 0.027 0.973 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.339 5.146 -8.788 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.065 5.065 4 N -0.092 5.092 5 N -0.169 5.169 6 C -0.167 4.167 7 C -0.127 4.127 8 C -0.139 4.139 9 C -0.001 4.001 10 N -0.266 5.266 11 C -0.056 4.056 12 C -0.149 4.149 13 C -0.141 4.141 14 C 0.035 3.965 15 H 0.015 0.985 16 C -0.569 4.569 17 H 0.075 0.925 18 C -0.184 4.184 19 N -0.557 5.557 20 Si 0.777 3.223 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 C -0.044 4.044 25 H 0.077 0.923 26 H 0.128 0.872 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.144 4.594 -10.581 16.039 hybrid contribution 0.407 0.144 2.288 2.328 sum -10.737 4.739 -8.293 14.371 Atomic orbital electron populations 1.22118 0.91383 1.05326 1.02862 1.22489 0.97430 0.75218 1.07072 1.47571 1.41136 1.14044 1.03741 1.78153 1.18807 0.99344 1.12897 1.74965 1.17646 1.11238 1.13082 1.22221 1.05742 0.97620 0.91158 1.20258 1.02052 0.92659 0.97708 1.21941 1.07277 0.92562 0.92076 1.20612 0.93510 0.99984 0.85989 1.62095 1.01635 1.48266 1.14589 1.22039 0.90202 0.94317 0.99070 1.21581 0.96663 0.99437 0.97204 1.21457 1.01720 0.98027 0.92849 1.18572 0.90865 0.93345 0.93718 0.98514 1.21526 1.05791 1.36028 0.93592 0.92519 1.25695 0.95307 0.95355 1.02075 1.70044 1.10115 1.38874 1.36673 0.85661 0.77035 0.78634 0.80940 1.20268 1.21416 1.19077 1.22020 0.99518 0.98427 0.84441 0.92306 0.87193 0.91745 0.86742 0.86580 0.90422 0.89453 0.89846 0.90756 0.87910 0.91906 0.94112 0.92004 0.93855 0.95429 0.92700 0.93246 0.95492 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 10.24 71.99 0.74 -1.37 16 2 C 0.10 1.75 6.75 86.38 0.58 2.34 16 3 N -0.27 -6.97 3.34 -334.39 -1.12 -8.08 16 4 N -0.11 -3.53 13.17 37.02 0.49 -3.04 16 5 N -0.30 -9.83 12.41 -48.60 -0.60 -10.43 16 6 C -0.03 -0.76 5.89 41.60 0.24 -0.51 16 7 C -0.07 -1.47 9.21 71.24 0.66 -0.81 16 8 C 0.00 -0.13 5.12 41.35 0.21 0.08 16 9 C 0.13 3.11 5.17 85.56 0.44 3.55 16 10 N -0.54 -17.12 4.80 -900.92 -4.32 -21.44 16 11 C 0.07 2.32 4.00 86.33 0.35 2.67 16 12 C -0.11 -4.25 6.09 30.65 0.19 -4.06 16 13 C -0.10 -4.73 5.03 30.67 0.15 -4.58 16 14 C 0.05 2.57 2.26 -11.49 -0.03 2.54 16 15 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 16 C -0.53 -27.85 8.56 25.60 0.22 -27.63 16 17 H 0.06 2.87 7.74 -2.91 -0.02 2.85 16 18 C 0.01 0.77 5.31 84.66 0.45 1.22 16 19 N -0.92 -52.22 11.36 21.45 0.24 -51.98 16 20 Si 0.95 42.31 29.54 68.60 2.03 44.33 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 C 0.08 3.08 4.65 86.33 0.40 3.48 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.12 2.08 7.72 -2.39 -0.02 2.06 16 30 H 0.08 1.67 7.17 -2.39 -0.02 1.65 16 31 H 0.09 1.59 7.31 -2.39 -0.02 1.57 16 32 H 0.08 1.61 8.14 -2.38 -0.02 1.60 16 33 H 0.07 1.63 7.25 -2.39 -0.02 1.62 16 34 H 0.10 2.12 7.81 -2.38 -0.02 2.11 16 35 H 0.06 2.04 5.64 -2.39 -0.01 2.02 16 36 H 0.04 1.25 7.07 -2.38 -0.02 1.23 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.05 2.93 6.16 -2.39 -0.01 2.92 16 41 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 2.46 8.12 -2.39 -0.02 2.44 16 Total: -1.00 -64.42 335.94 2.30 -62.12 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.98 Total: 11.60 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 4.61 Total: -23.07 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -5.31 Total: -94.98 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -64.42 2.30 -62.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.315 kcal (2) G-P(sol) polarization free energy of solvation -64.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds