Wall clock time and date at job start Fri Apr 10 2020 17:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.47171 * 2 1 4 4 C 1.46901 * 110.99570 * 160.31461 * 3 2 1 5 5 C 1.52999 * 109.47702 * 287.84478 * 4 3 2 6 6 C 1.46896 * 111.00181 * 284.27384 * 3 2 1 7 7 C 1.50696 * 109.47012 * 170.00051 * 6 3 2 8 8 C 1.35353 * 126.75271 * 94.99726 * 7 6 3 9 9 N 1.35309 * 106.17771 * 180.02562 * 8 7 6 10 10 C 1.46501 * 125.87112 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47015 * 120.57330 * 10 9 8 12 12 C 1.50699 * 115.54968 * 294.56458 * 11 10 9 13 13 H 1.08006 * 120.00042 * 99.15889 * 12 11 10 14 14 C 1.37875 * 120.00048 * 279.16166 * 12 11 10 15 15 N 1.31512 * 119.99689 * 5.83603 * 14 12 11 16 16 Si 1.86805 * 120.00029 * 185.84248 * 14 12 11 17 17 H 1.48497 * 109.46901 * 269.99603 * 16 14 12 18 18 H 1.48499 * 109.47255 * 29.99568 * 16 14 12 19 19 H 1.48495 * 109.47257 * 149.99749 * 16 14 12 20 20 C 1.53000 * 117.51795 * 80.26208 * 11 10 9 21 21 C 1.52998 * 117.49834 * 148.89270 * 11 10 9 22 22 N 1.28715 * 108.26340 * 0.26992 * 9 8 7 23 23 N 1.28639 * 110.17457 * 359.55087 * 22 9 8 24 24 H 1.08996 * 109.47224 * 185.58518 * 1 2 3 25 25 H 1.09003 * 109.46875 * 305.58792 * 1 2 3 26 26 H 1.08999 * 109.46951 * 65.58585 * 1 2 3 27 27 H 1.09004 * 109.46974 * 240.00715 * 2 1 3 28 28 H 1.09004 * 109.47010 * 120.00593 * 2 1 3 29 29 H 1.09003 * 109.46704 * 47.84933 * 4 3 2 30 30 H 1.09004 * 109.46893 * 167.84348 * 4 3 2 31 31 H 1.08997 * 109.47272 * 185.60681 * 5 4 3 32 32 H 1.09000 * 109.47145 * 305.61215 * 5 4 3 33 33 H 1.09008 * 109.46573 * 65.60909 * 5 4 3 34 34 H 1.08996 * 109.47396 * 49.99775 * 6 3 2 35 35 H 1.09004 * 109.46802 * 290.00101 * 6 3 2 36 36 H 1.08008 * 126.91222 * 0.04158 * 8 7 6 37 37 H 1.09003 * 109.47136 * 0.57672 * 10 9 8 38 38 H 1.08998 * 109.47358 * 240.57576 * 10 9 8 39 39 H 0.97008 * 119.99593 * 174.98981 * 15 14 12 40 40 H 1.08998 * 117.50252 * 214.97150 * 20 11 10 41 41 H 1.09007 * 117.49837 * 359.97438 * 20 11 10 42 42 H 1.08992 * 117.50252 * 359.97438 * 21 11 10 43 43 H 1.08996 * 117.49441 * 144.99767 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4126 1.4508 0.4620 5 6 3.4633 1.1891 1.9686 6 6 1.8764 1.9941 -1.3290 7 6 2.1540 3.4724 -1.2367 8 6 3.3334 4.0915 -1.4769 9 7 3.1152 5.4110 -1.2716 10 6 4.1095 6.4777 -1.4125 11 6 3.6364 7.4798 -2.4675 12 6 3.5427 6.9470 -3.8741 13 1 2.5873 6.6379 -4.2719 14 6 4.6765 6.8542 -4.6531 15 7 5.8548 7.1210 -4.1336 16 14 4.5388 6.3495 -6.4464 17 1 4.6447 4.8723 -6.5544 18 1 3.2283 6.7926 -6.9862 19 1 5.6340 6.9824 -7.2242 20 6 2.6047 8.5246 -2.0377 21 6 4.0549 8.9409 -2.2919 22 7 1.8854 5.5674 -0.9252 23 7 1.2835 4.4308 -0.9005 24 1 -0.3633 -1.0227 0.1000 25 1 -0.3633 0.5981 0.8358 26 1 -0.3633 0.4248 -0.9358 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 4.0038 0.6969 -0.0579 30 1 3.8189 2.4401 0.2512 31 1 4.4815 1.3357 2.3288 32 1 2.7937 1.8804 2.4802 33 1 3.1506 0.1644 2.1700 34 1 0.8611 1.8371 -1.6931 35 1 2.5847 1.5337 -2.0179 36 1 4.2619 3.6260 -1.7731 37 1 5.0623 6.0477 -1.7212 38 1 4.2334 6.9874 -0.4570 39 1 6.6586 6.9859 -4.6596 40 1 1.8582 8.8268 -2.7722 41 1 2.2624 8.4981 -1.0031 42 1 4.6669 9.1884 -1.4246 43 1 4.2625 9.5167 -3.1937 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600970713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:06 Heat of formation + Delta-G solvation = 119.279510 kcal Electronic energy + Delta-G solvation = -22147.648994 eV Core-core repulsion = 19037.902935 eV Total energy + Delta-G solvation = -3109.746059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.46013 -38.04039 -36.90262 -33.25735 -32.12666 -31.86322 -31.53508 -28.93077 -27.13070 -25.60458 -25.32721 -22.98864 -21.51346 -21.32108 -21.04838 -20.18589 -19.20395 -16.82075 -16.01821 -15.69167 -15.52369 -15.04844 -14.80092 -14.72490 -14.11087 -13.88565 -13.75373 -13.37303 -13.08055 -12.50005 -12.30376 -12.00354 -11.89089 -11.75360 -11.52303 -11.50351 -11.13210 -11.08066 -10.97629 -10.81362 -10.65821 -10.61677 -10.33943 -10.09535 -9.98483 -9.20387 -8.97021 -8.61505 -8.55479 -8.33886 -8.20163 -6.23939 -4.30200 2.41213 3.11690 3.17501 3.25649 3.28418 3.31340 4.10608 4.26056 4.82498 4.93818 5.03858 5.14381 5.17628 5.18214 5.25771 5.45133 5.47176 5.49748 5.55142 5.66285 5.72901 5.73393 5.81733 5.89369 5.97917 6.02205 6.04912 6.12599 6.21859 6.27661 6.32760 6.41674 6.68170 6.72005 6.81246 6.92979 7.13856 7.16639 7.18103 7.33395 7.49378 7.70726 8.21642 8.72976 9.34219 9.37470 10.84303 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.019700 B = 0.004704 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.970581 B = 5951.389015 C = 6438.880444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 N -0.532 5.532 4 C 0.046 3.954 5 C -0.144 4.144 6 C 0.147 3.853 7 C -0.032 4.032 8 C -0.040 4.040 9 N -0.248 5.248 10 C 0.150 3.850 11 C 0.025 3.975 12 C -0.492 4.492 13 H 0.059 0.941 14 C 0.074 3.926 15 N -0.882 5.882 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.272 1.272 19 H -0.284 1.284 20 C -0.190 4.190 21 C -0.151 4.151 22 N -0.080 5.080 23 N -0.275 5.275 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.175 0.825 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.263 0.737 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.633 -11.432 7.656 13.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.257 5.257 4 C -0.082 4.082 5 C -0.202 4.202 6 C 0.018 3.982 7 C -0.172 4.172 8 C -0.194 4.194 9 N -0.039 5.039 10 C 0.030 3.970 11 C 0.023 3.977 12 C -0.529 4.529 13 H 0.077 0.923 14 C -0.129 4.129 15 N -0.518 5.518 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.197 1.197 19 H -0.210 1.210 20 C -0.227 4.227 21 C -0.189 4.189 22 N -0.060 5.060 23 N -0.140 5.140 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.192 0.808 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.790 -10.030 8.318 13.326 hybrid contribution 1.685 -1.349 -2.031 2.964 sum -1.105 -11.379 6.287 13.047 Atomic orbital electron populations 1.21770 0.94876 1.00992 1.02825 1.22098 0.96336 0.88769 1.00562 1.61991 1.20431 1.17372 1.25927 1.22129 0.88570 1.01630 0.95892 1.21760 1.01370 1.01470 0.95612 1.20131 1.01987 0.86959 0.89086 1.21411 0.90892 0.96434 1.08508 1.23202 1.01713 0.84878 1.09562 1.47384 1.09428 1.07131 1.39998 1.21952 0.88750 0.87180 0.99152 1.18922 0.98563 0.86529 0.93651 1.20380 0.94256 1.43390 0.94918 0.92323 1.24966 0.95308 0.94382 0.98291 1.69932 0.97385 1.47183 1.37339 0.86602 0.78053 0.78646 0.84933 1.20576 1.19688 1.20974 1.22929 0.92572 1.07359 0.99886 1.22613 0.95605 0.99870 1.00849 1.78209 0.90779 1.18867 1.18136 1.74946 1.26559 0.94844 1.17687 0.92771 0.91679 0.92639 0.94911 0.90899 0.95032 0.90365 0.92605 0.91833 0.93125 0.89267 0.93539 0.80781 0.87297 0.91236 0.92726 0.90243 0.90842 0.91511 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.94 37.16 0.37 -1.10 16 2 C 0.05 0.52 5.55 -3.82 -0.02 0.50 16 3 N -0.53 -6.93 4.38 -236.07 -1.03 -7.96 16 4 C 0.05 0.55 5.55 -3.82 -0.02 0.53 16 5 C -0.14 -1.53 9.89 37.16 0.37 -1.16 16 6 C 0.15 2.12 5.35 -4.98 -0.03 2.09 16 7 C -0.03 -0.59 6.03 -82.78 -0.50 -1.09 16 8 C -0.04 -0.73 10.12 -17.05 -0.17 -0.90 16 9 N -0.25 -5.12 3.31 -61.26 -0.20 -5.32 16 10 C 0.15 3.11 6.27 -4.04 -0.03 3.08 16 11 C 0.02 0.57 1.36 -155.66 -0.21 0.36 16 12 C -0.49 -12.81 8.72 -34.44 -0.30 -13.11 16 13 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 14 C 0.07 1.90 5.42 -17.82 -0.10 1.81 16 15 N -0.88 -22.88 13.09 55.43 0.73 -22.15 16 16 Si 0.89 20.39 29.55 -169.99 -5.02 15.37 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.19 -4.10 9.91 -26.73 -0.26 -4.36 16 21 C -0.15 -3.29 9.66 -26.73 -0.26 -3.55 16 22 N -0.08 -1.77 12.97 60.35 0.78 -0.99 16 23 N -0.27 -5.82 12.41 33.29 0.41 -5.40 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.58 6.97 -51.93 -0.36 0.22 16 27 H 0.03 0.32 8.00 -51.93 -0.42 -0.09 16 28 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 29 H 0.03 0.34 8.05 -51.93 -0.42 -0.07 16 30 H 0.08 1.06 5.84 -51.93 -0.30 0.76 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.47 6.73 -51.92 -0.35 0.12 16 34 H 0.09 1.26 6.72 -51.93 -0.35 0.92 16 35 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 36 H 0.17 2.73 8.06 -52.48 -0.42 2.31 16 37 H 0.11 2.29 8.07 -51.93 -0.42 1.88 16 38 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 39 H 0.26 6.57 8.32 -40.82 -0.34 6.23 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -28.17 353.05 -7.32 -35.49 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.14 Total: 2.57 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.16 Total: -16.92 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.68 Total: -41.82 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.17 -7.32 -35.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600970713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.768 kcal (2) G-P(sol) polarization free energy of solvation -28.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds