Wall clock time and date at job start Fri Apr 10 2020 17:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.47171 * 2 1 4 4 C 1.46901 * 110.99570 * 160.31461 * 3 2 1 5 5 C 1.52999 * 109.47702 * 287.84478 * 4 3 2 6 6 C 1.46896 * 111.00181 * 284.27384 * 3 2 1 7 7 C 1.50696 * 109.47012 * 170.00051 * 6 3 2 8 8 C 1.35353 * 126.75271 * 94.99726 * 7 6 3 9 9 N 1.35309 * 106.17771 * 180.02562 * 8 7 6 10 10 C 1.46501 * 125.87112 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47015 * 120.57330 * 10 9 8 12 12 C 1.50699 * 115.54968 * 294.56458 * 11 10 9 13 13 H 1.08006 * 120.00042 * 99.15889 * 12 11 10 14 14 C 1.37875 * 120.00048 * 279.16166 * 12 11 10 15 15 N 1.31512 * 119.99689 * 5.83603 * 14 12 11 16 16 Si 1.86805 * 120.00029 * 185.84248 * 14 12 11 17 17 H 1.48497 * 109.46901 * 269.99603 * 16 14 12 18 18 H 1.48499 * 109.47255 * 29.99568 * 16 14 12 19 19 H 1.48495 * 109.47257 * 149.99749 * 16 14 12 20 20 C 1.53000 * 117.51795 * 80.26208 * 11 10 9 21 21 C 1.52998 * 117.49834 * 148.89270 * 11 10 9 22 22 N 1.28715 * 108.26340 * 0.26992 * 9 8 7 23 23 N 1.28639 * 110.17457 * 359.55087 * 22 9 8 24 24 H 1.08996 * 109.47224 * 185.58518 * 1 2 3 25 25 H 1.09003 * 109.46875 * 305.58792 * 1 2 3 26 26 H 1.08999 * 109.46951 * 65.58585 * 1 2 3 27 27 H 1.09004 * 109.46974 * 240.00715 * 2 1 3 28 28 H 1.09004 * 109.47010 * 120.00593 * 2 1 3 29 29 H 1.09003 * 109.46704 * 47.84933 * 4 3 2 30 30 H 1.09004 * 109.46893 * 167.84348 * 4 3 2 31 31 H 1.08997 * 109.47272 * 185.60681 * 5 4 3 32 32 H 1.09000 * 109.47145 * 305.61215 * 5 4 3 33 33 H 1.09008 * 109.46573 * 65.60909 * 5 4 3 34 34 H 1.08996 * 109.47396 * 49.99775 * 6 3 2 35 35 H 1.09004 * 109.46802 * 290.00101 * 6 3 2 36 36 H 1.08008 * 126.91222 * 0.04158 * 8 7 6 37 37 H 1.09003 * 109.47136 * 0.57672 * 10 9 8 38 38 H 1.08998 * 109.47358 * 240.57576 * 10 9 8 39 39 H 0.97008 * 119.99593 * 174.98981 * 15 14 12 40 40 H 1.08998 * 117.50252 * 214.97150 * 20 11 10 41 41 H 1.09007 * 117.49837 * 359.97438 * 20 11 10 42 42 H 1.08992 * 117.50252 * 359.97438 * 21 11 10 43 43 H 1.08996 * 117.49441 * 144.99767 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4126 1.4508 0.4620 5 6 3.4633 1.1891 1.9686 6 6 1.8764 1.9941 -1.3290 7 6 2.1540 3.4724 -1.2367 8 6 3.3334 4.0915 -1.4769 9 7 3.1152 5.4110 -1.2716 10 6 4.1095 6.4777 -1.4125 11 6 3.6364 7.4798 -2.4675 12 6 3.5427 6.9470 -3.8741 13 1 2.5873 6.6379 -4.2719 14 6 4.6765 6.8542 -4.6531 15 7 5.8548 7.1210 -4.1336 16 14 4.5388 6.3495 -6.4464 17 1 4.6447 4.8723 -6.5544 18 1 3.2283 6.7926 -6.9862 19 1 5.6340 6.9824 -7.2242 20 6 2.6047 8.5246 -2.0377 21 6 4.0549 8.9409 -2.2919 22 7 1.8854 5.5674 -0.9252 23 7 1.2835 4.4308 -0.9005 24 1 -0.3633 -1.0227 0.1000 25 1 -0.3633 0.5981 0.8358 26 1 -0.3633 0.4248 -0.9358 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 4.0038 0.6969 -0.0579 30 1 3.8189 2.4401 0.2512 31 1 4.4815 1.3357 2.3288 32 1 2.7937 1.8804 2.4802 33 1 3.1506 0.1644 2.1700 34 1 0.8611 1.8371 -1.6931 35 1 2.5847 1.5337 -2.0179 36 1 4.2619 3.6260 -1.7731 37 1 5.0623 6.0477 -1.7212 38 1 4.2334 6.9874 -0.4570 39 1 6.6586 6.9859 -4.6596 40 1 1.8582 8.8268 -2.7722 41 1 2.2624 8.4981 -1.0031 42 1 4.6669 9.1884 -1.4246 43 1 4.2625 9.5167 -3.1937 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600970713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:05 Heat of formation + Delta-G solvation = 103.264220 kcal Electronic energy + Delta-G solvation = -22148.343469 eV Core-core repulsion = 19037.902935 eV Total energy + Delta-G solvation = -3110.440534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.98868 -39.07565 -38.59398 -34.82419 -34.07298 -32.89910 -32.65578 -30.05425 -28.74827 -27.48084 -26.53412 -23.87816 -23.09137 -22.88358 -22.46771 -21.46046 -20.81626 -18.47395 -17.55046 -17.16788 -16.72448 -16.60161 -16.21636 -15.80559 -15.72611 -15.29945 -14.90828 -14.67301 -14.42264 -13.78648 -13.70229 -13.29318 -13.09706 -13.04003 -12.90817 -12.82354 -12.53585 -12.49767 -12.38599 -12.26239 -12.08876 -11.92299 -11.78540 -11.54547 -11.49278 -10.98175 -10.74603 -10.45459 -10.16347 -9.97243 -9.18495 -8.20361 -6.31367 0.90555 1.34403 1.39491 1.47178 1.66511 1.75106 2.36353 3.07103 3.10807 3.44524 3.55063 3.91599 4.08786 4.11977 4.12992 4.18943 4.29563 4.34496 4.43797 4.50335 4.55815 4.62685 4.65338 4.69218 4.75216 4.79958 4.92240 4.98661 5.05041 5.14170 5.15591 5.17307 5.22698 5.36079 5.37942 5.41631 5.48319 5.57652 5.67322 5.92734 6.15423 6.27435 6.30637 6.70554 7.37761 7.78926 8.86788 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.019700 B = 0.004704 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.970581 B = 5951.389015 C = 6438.880444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 N -0.547 5.547 4 C 0.044 3.956 5 C -0.139 4.139 6 C 0.150 3.850 7 C -0.027 4.027 8 C -0.043 4.043 9 N -0.254 5.254 10 C 0.159 3.841 11 C 0.005 3.995 12 C -0.508 4.508 13 H 0.030 0.970 14 C 0.045 3.955 15 N -0.894 5.894 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.278 1.278 20 C -0.181 4.181 21 C -0.143 4.143 22 N -0.112 5.112 23 N -0.299 5.299 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.200 0.800 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.266 0.734 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -13.075 7.985 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 N -0.273 5.273 4 C -0.083 4.083 5 C -0.197 4.197 6 C 0.021 3.979 7 C -0.167 4.167 8 C -0.196 4.196 9 N -0.046 5.046 10 C 0.038 3.962 11 C 0.003 3.997 12 C -0.545 4.545 13 H 0.048 0.952 14 C -0.158 4.158 15 N -0.531 5.531 16 Si 0.764 3.236 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.203 1.203 20 C -0.218 4.218 21 C -0.181 4.181 22 N -0.091 5.091 23 N -0.165 5.165 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.216 0.784 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.982 -11.674 8.658 14.669 hybrid contribution 1.402 -0.878 -2.131 2.698 sum -0.580 -12.551 6.526 14.159 Atomic orbital electron populations 1.21753 0.94792 1.01974 1.01681 1.22175 0.96362 0.87398 1.01718 1.61963 1.21255 1.19064 1.24997 1.22152 0.88194 1.01084 0.96892 1.21716 1.01690 1.01810 0.94439 1.20176 1.02432 0.84829 0.90439 1.22000 0.90158 0.97757 1.06805 1.23704 1.02847 0.84162 1.08906 1.47404 1.09133 1.07860 1.40186 1.21783 0.88300 0.86835 0.99254 1.18993 0.99941 0.87504 0.93226 1.20384 0.93216 1.44185 0.96761 0.95153 1.25403 0.95092 0.94447 1.00812 1.69968 0.97567 1.47342 1.38187 0.85872 0.77473 0.78616 0.81643 1.19910 1.20745 1.20309 1.22862 0.92216 1.06499 1.00234 1.22566 0.95968 0.98694 1.00913 1.78164 0.91513 1.19582 1.19818 1.74900 1.27541 0.95457 1.18566 0.90630 0.93170 0.93508 0.93764 0.89567 0.93441 0.92225 0.91443 0.93733 0.91640 0.89368 0.91800 0.78358 0.87724 0.89261 0.92457 0.91434 0.89450 0.89191 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.94 71.98 0.72 -1.93 16 2 C 0.05 0.93 5.55 86.30 0.48 1.41 16 3 N -0.55 -13.31 4.38 -900.78 -3.95 -17.26 16 4 C 0.04 0.98 5.55 86.30 0.48 1.46 16 5 C -0.14 -2.68 9.89 71.98 0.71 -1.97 16 6 C 0.15 4.11 5.35 85.56 0.46 4.57 16 7 C -0.03 -0.95 6.03 41.60 0.25 -0.70 16 8 C -0.04 -1.53 10.12 83.49 0.84 -0.69 16 9 N -0.25 -10.39 3.31 -347.72 -1.15 -11.54 16 10 C 0.16 6.45 6.27 86.38 0.54 6.99 16 11 C 0.00 0.21 1.36 -52.93 -0.07 0.14 16 12 C -0.51 -26.66 8.72 25.60 0.22 -26.44 16 13 H 0.03 1.73 7.82 -2.91 -0.02 1.70 16 14 C 0.04 2.28 5.42 84.65 0.46 2.74 16 15 N -0.89 -45.65 13.09 21.45 0.28 -45.37 16 16 Si 0.94 41.53 29.55 68.60 2.03 43.56 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 C -0.18 -7.76 9.91 30.60 0.30 -7.45 16 21 C -0.14 -6.14 9.66 30.59 0.30 -5.85 16 22 N -0.11 -4.95 12.97 37.02 0.48 -4.47 16 23 N -0.30 -12.72 12.41 -48.61 -0.60 -13.33 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 0.93 6.97 -2.39 -0.02 0.91 16 27 H 0.04 0.73 8.00 -2.39 -0.02 0.71 16 28 H 0.09 1.37 6.34 -2.39 -0.02 1.35 16 29 H 0.05 0.90 8.05 -2.39 -0.02 0.88 16 30 H 0.06 1.53 5.84 -2.39 -0.01 1.52 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.05 6.73 -2.38 -0.02 1.04 16 34 H 0.09 2.41 6.72 -2.39 -0.02 2.40 16 35 H 0.06 1.51 8.12 -2.38 -0.02 1.49 16 36 H 0.20 5.91 8.06 -2.91 -0.02 5.88 16 37 H 0.10 4.31 8.07 -2.39 -0.02 4.29 16 38 H 0.09 3.22 8.09 -2.39 -0.02 3.20 16 39 H 0.27 12.99 8.32 -92.70 -0.77 12.22 16 40 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 42 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -59.66 353.05 3.75 -55.91 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.97 Total: 20.21 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 5.69 Total: -27.72 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -4.94 Total: -91.97 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -59.66 3.75 -55.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600970713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.177 kcal (2) G-P(sol) polarization free energy of solvation -59.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds