Wall clock time and date at job start Fri Apr 10 2020 17:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00120 * 2 1 4 4 H 1.48492 * 109.47184 * 239.99568 * 3 2 1 5 5 H 1.48496 * 109.46796 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47013 * 119.99335 * 3 2 1 7 7 C 1.37878 * 119.99502 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99648 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00511 * 0.02562 * 7 2 1 10 10 C 1.52997 * 115.55404 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46969 * 34.32844 * 10 9 7 12 12 C 1.47841 * 110.99923 * 53.75468 * 11 10 9 13 13 C 1.54914 * 104.79739 * 146.36583 * 12 11 10 14 14 C 1.55402 * 101.73807 * 323.02024 * 13 12 11 15 15 C 1.47441 * 111.00105 * 174.59764 * 11 10 9 16 16 H 1.09003 * 109.88696 * 117.17262 * 15 11 10 17 17 C 1.52999 * 109.89007 * 356.14980 * 15 11 10 18 18 N 1.46904 * 109.46785 * 64.78281 * 17 15 11 19 19 C 1.47844 * 111.00005 * 49.16274 * 18 17 15 20 20 C 1.54912 * 104.79538 * 146.36254 * 19 18 17 21 21 C 1.55133 * 101.65278 * 322.92627 * 20 19 18 22 22 C 1.47452 * 110.99833 * 170.00273 * 18 17 15 23 23 C 1.53004 * 117.51463 * 325.69700 * 9 7 2 24 24 C 1.52999 * 117.49703 * 34.32420 * 9 7 2 25 25 H 0.97003 * 119.99875 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47254 * 274.33311 * 10 9 7 27 27 H 1.08994 * 109.47677 * 154.32394 * 10 9 7 28 28 H 1.08997 * 110.37911 * 265.19530 * 12 11 10 29 29 H 1.09001 * 110.37325 * 27.42590 * 12 11 10 30 30 H 1.08995 * 110.98954 * 81.02044 * 13 12 11 31 31 H 1.08998 * 110.98683 * 204.80513 * 13 12 11 32 32 H 1.09001 * 110.67835 * 277.17729 * 14 13 12 33 33 H 1.09000 * 110.84448 * 153.86399 * 14 13 12 34 34 H 1.08999 * 109.47246 * 304.78917 * 17 15 11 35 35 H 1.08994 * 109.46950 * 184.78158 * 17 15 11 36 36 H 1.08993 * 110.37412 * 27.52822 * 19 18 17 37 37 H 1.09003 * 110.37049 * 265.18438 * 19 18 17 38 38 H 1.08999 * 110.98510 * 204.83489 * 20 19 18 39 39 H 1.09000 * 110.99206 * 81.01956 * 20 19 18 40 40 H 1.09004 * 110.70983 * 154.04038 * 21 20 19 41 41 H 1.09003 * 110.70440 * 277.27542 * 21 20 19 42 42 H 1.08993 * 109.89175 * 117.33521 * 22 18 17 43 43 H 1.08999 * 109.88340 * 356.14517 * 22 18 17 44 44 H 1.08998 * 117.49454 * 214.97105 * 23 9 7 45 45 H 1.08997 * 117.50050 * 359.97438 * 23 9 7 46 46 H 1.08996 * 117.50222 * 359.97438 * 24 9 7 47 47 H 1.09002 * 117.49810 * 145.00104 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.1163 -3.7609 0.0005 11 7 3.3366 -3.5177 0.7816 12 6 3.0090 -3.0236 2.1359 13 6 4.1137 -3.6110 3.0494 14 6 4.3312 -5.0149 2.4196 15 6 4.1349 -4.7504 0.9120 16 1 5.1034 -4.6177 0.4296 17 6 3.3905 -5.9230 0.2704 18 7 3.2661 -5.6920 -1.1750 19 6 4.5683 -5.3157 -1.7654 20 6 4.5488 -5.9269 -3.1887 21 6 3.8073 -7.2674 -2.9439 22 6 2.7702 -6.8986 -1.8623 23 6 -0.0736 -2.5507 0.7648 24 6 -0.0726 -2.5507 -0.7652 25 1 -0.4850 0.8401 -0.0004 26 1 2.3859 -4.0166 -1.0242 27 1 1.5582 -4.5844 0.4458 28 1 3.0367 -1.9342 2.1595 29 1 2.0277 -3.3841 2.4444 30 1 5.0245 -3.0149 2.9934 31 1 3.7659 -3.6933 4.0791 32 1 3.5867 -5.7212 2.7870 33 1 5.3395 -5.3776 2.6192 34 1 2.3974 -6.0080 0.7114 35 1 3.9456 -6.8447 0.4446 36 1 5.3859 -5.7387 -1.1819 37 1 4.6611 -4.2310 -1.8196 38 1 5.5613 -6.1016 -3.5525 39 1 3.9917 -5.2928 -3.8784 40 1 3.3115 -7.6054 -3.8539 41 1 4.4962 -8.0270 -2.5742 42 1 1.8069 -6.6907 -2.3278 43 1 2.6711 -7.7170 -1.1492 44 1 -0.3283 -3.4834 1.2679 45 1 -0.3999 -1.6406 1.2681 46 1 -0.3986 -1.6406 -1.2687 47 1 -0.3268 -3.4835 -1.2686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602772293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:40 Heat of formation + Delta-G solvation = 64.563005 kcal Electronic energy + Delta-G solvation = -23811.178970 eV Core-core repulsion = 20802.600569 eV Total energy + Delta-G solvation = -3008.578402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.83508 -37.79987 -35.94445 -32.46933 -31.57428 -30.49583 -29.06087 -28.30105 -25.57581 -24.55798 -24.24439 -21.26835 -21.01638 -20.58531 -20.25593 -19.12649 -18.40819 -16.21946 -15.95642 -15.62937 -15.30226 -14.89039 -14.45115 -13.71582 -13.46967 -13.12211 -13.03500 -12.98412 -12.90321 -12.17670 -12.01334 -11.70355 -11.62265 -11.23760 -11.05030 -11.01905 -10.93832 -10.74068 -10.73142 -10.61394 -10.45515 -10.36954 -10.30344 -10.15266 -9.86660 -9.76651 -9.10172 -8.59623 -8.16447 -7.93673 -7.59785 -7.16220 -5.73946 -3.74966 3.42025 3.46457 3.50050 4.11165 4.56822 4.66843 4.78780 4.83624 5.02063 5.06077 5.12499 5.31167 5.34894 5.40819 5.50438 5.58604 5.64545 5.70933 5.75999 5.80018 5.90204 5.95505 6.05377 6.07311 6.15485 6.16653 6.27533 6.29140 6.31781 6.43829 6.61492 6.72542 6.85774 6.94462 7.07627 7.14849 7.17883 7.24660 7.34123 7.44258 7.68690 7.87776 8.10552 8.17711 8.32574 8.42791 8.83456 9.25873 9.78008 11.22295 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.006320 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.507809 B = 4429.545803 C = 4979.228460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.049 3.951 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.446 4.446 8 H 0.073 0.927 9 C 0.023 3.977 10 C 0.089 3.911 11 N -0.496 5.496 12 C 0.056 3.944 13 C -0.134 4.134 14 C -0.136 4.136 15 C 0.068 3.932 16 H 0.077 0.923 17 C 0.036 3.964 18 N -0.509 5.509 19 C 0.043 3.957 20 C -0.131 4.131 21 C -0.141 4.141 22 C 0.037 3.963 23 C -0.198 4.198 24 C -0.187 4.187 25 H 0.254 0.746 26 H 0.111 0.889 27 H 0.005 0.995 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.029 0.971 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.031 0.969 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.494 -13.365 -0.375 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.150 4.150 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.483 4.483 8 H 0.091 0.909 9 C 0.022 3.978 10 C -0.038 4.038 11 N -0.219 5.219 12 C -0.072 4.072 13 C -0.172 4.172 14 C -0.176 4.176 15 C -0.041 4.041 16 H 0.095 0.905 17 C -0.093 4.093 18 N -0.232 5.232 19 C -0.085 4.085 20 C -0.169 4.169 21 C -0.179 4.179 22 C -0.091 4.091 23 C -0.235 4.235 24 C -0.226 4.226 25 H 0.064 0.936 26 H 0.128 0.872 27 H 0.023 0.977 28 H 0.111 0.889 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.271 -12.443 -0.711 14.959 hybrid contribution 0.239 -0.480 0.671 0.859 sum 8.511 -12.923 -0.040 15.474 Atomic orbital electron populations 1.70035 1.05714 1.25447 1.51518 1.25066 0.94848 0.98970 0.96119 0.86684 0.79429 0.83490 0.78447 1.20525 1.21827 1.20534 1.20690 0.93295 0.88101 1.46257 0.90930 1.19130 0.85487 0.93437 0.99729 1.22336 0.87980 0.93983 0.99480 1.63695 1.20682 1.23860 1.13687 1.22981 0.95154 1.02043 0.87013 1.22815 1.00249 0.95451 0.98679 1.22842 1.00892 0.97930 0.95891 1.22638 0.98090 0.89552 0.93868 0.90509 1.22803 1.00937 0.96837 0.88712 1.64102 1.25424 1.30981 1.02733 1.23080 0.89977 1.02111 0.93295 1.22726 1.00220 0.96206 0.97718 1.22764 0.98188 0.97668 0.99298 1.22889 0.99048 0.91398 0.95743 1.22860 1.07381 0.98869 0.94431 1.22724 1.06440 0.99275 0.94136 0.93587 0.87192 0.97708 0.88905 0.94316 0.91334 0.91883 0.92079 0.91849 0.90333 0.95282 0.94049 0.89001 0.91325 0.90455 0.91096 0.92070 0.90451 0.93331 0.95022 0.87696 0.87560 0.94492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 8.59 55.43 0.48 -24.81 16 2 C 0.05 1.36 5.28 -17.82 -0.09 1.27 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.45 -12.08 7.16 -34.44 -0.25 -12.33 16 8 H 0.07 1.99 7.08 -52.49 -0.37 1.62 16 9 C 0.02 0.57 1.63 -155.66 -0.25 0.32 16 10 C 0.09 1.89 3.75 -3.82 -0.01 1.88 16 11 N -0.50 -9.58 4.36 -223.35 -0.97 -10.56 16 12 C 0.06 1.08 5.37 -2.30 -0.01 1.06 16 13 C -0.13 -2.02 7.08 -24.45 -0.17 -2.19 16 14 C -0.14 -1.86 6.49 -24.77 -0.16 -2.02 16 15 C 0.07 1.05 3.10 -66.73 -0.21 0.84 16 16 H 0.08 1.18 6.37 -51.93 -0.33 0.85 16 17 C 0.04 0.52 3.41 -3.82 -0.01 0.50 16 18 N -0.51 -7.42 2.21 -231.24 -0.51 -7.93 16 19 C 0.04 0.57 5.11 -2.30 -0.01 0.56 16 20 C -0.13 -1.47 7.08 -24.59 -0.17 -1.64 16 21 C -0.14 -1.46 6.94 -24.91 -0.17 -1.64 16 22 C 0.04 0.46 6.88 -2.83 -0.02 0.44 16 23 C -0.20 -5.08 8.99 -26.73 -0.24 -5.32 16 24 C -0.19 -4.85 9.38 -26.73 -0.25 -5.10 16 25 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.11 2.37 5.45 -51.93 -0.28 2.09 16 27 H 0.00 0.10 5.79 -51.93 -0.30 -0.20 16 28 H 0.09 2.05 6.90 -51.93 -0.36 1.69 16 29 H 0.04 0.80 7.39 -51.93 -0.38 0.42 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.25 6.32 -51.93 -0.33 0.92 16 35 H 0.03 0.37 7.96 -51.93 -0.41 -0.04 16 36 H 0.04 0.52 7.06 -51.93 -0.37 0.15 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.56 7.49 -51.93 -0.39 0.17 16 44 H 0.03 0.76 8.05 -51.93 -0.42 0.34 16 45 H 0.10 2.97 6.28 -51.93 -0.33 2.65 16 46 H 0.11 3.03 6.28 -51.93 -0.33 2.70 16 47 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -28.03 339.64 -11.32 -39.35 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.37 Total: 5.56 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -2.04 Total: -23.37 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -1.01 Total: -43.29 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.03 -11.32 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602772293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.913 kcal (2) G-P(sol) polarization free energy of solvation -28.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds