Wall clock time and date at job start Fri Apr 10 2020 17:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99741 * 2 1 4 4 H 1.48501 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46959 * 299.99549 * 3 2 1 6 6 H 1.48497 * 109.47385 * 59.99528 * 3 2 1 7 7 C 1.37884 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99615 * 188.89639 * 7 2 1 9 9 C 1.50695 * 119.99487 * 8.62295 * 7 2 1 10 10 C 1.53002 * 115.55378 * 40.01698 * 9 7 2 11 11 N 1.46895 * 109.46932 * 55.24677 * 10 9 7 12 12 C 1.48535 * 111.00257 * 58.68128 * 11 10 9 13 13 C 1.54936 * 103.23014 * 159.71841 * 12 11 10 14 14 C 1.54600 * 102.91831 * 322.58278 * 13 12 11 15 15 H 1.08997 * 110.31188 * 263.04059 * 14 13 12 16 16 C 1.52997 * 110.38932 * 140.91704 * 14 13 12 17 17 N 1.46900 * 109.47314 * 69.23542 * 16 14 13 18 18 C 1.48531 * 111.00155 * 52.60046 * 17 16 14 19 19 C 1.54927 * 103.22934 * 159.72355 * 18 17 16 20 20 C 1.54598 * 102.92518 * 322.58694 * 19 18 17 21 21 C 1.47902 * 111.00397 * 170.00092 * 17 16 14 22 22 C 1.47905 * 110.99821 * 176.07554 * 11 10 9 23 23 C 1.53001 * 117.49615 * 254.30550 * 9 7 2 24 24 C 1.53007 * 117.49501 * 185.68387 * 9 7 2 25 25 H 0.96994 * 120.00493 * 4.98917 * 1 2 3 26 26 H 1.08996 * 109.46811 * 175.25211 * 10 9 7 27 27 H 1.09000 * 109.46574 * 295.24717 * 10 9 7 28 28 H 1.09004 * 110.66595 * 278.15543 * 12 11 10 29 29 H 1.09001 * 110.66637 * 41.28020 * 12 11 10 30 30 H 1.08997 * 110.72012 * 204.22725 * 13 12 11 31 31 H 1.08995 * 110.87990 * 81.01266 * 13 12 11 32 32 H 1.08999 * 109.47152 * 189.23560 * 16 14 13 33 33 H 1.09005 * 109.47483 * 309.23503 * 16 14 13 34 34 H 1.08996 * 110.66731 * 278.15965 * 18 17 16 35 35 H 1.09007 * 110.66552 * 41.28796 * 18 17 16 36 36 H 1.09002 * 110.72831 * 204.23195 * 19 18 17 37 37 H 1.08997 * 110.88119 * 81.01784 * 19 18 17 38 38 H 1.08996 * 110.30979 * 263.04505 * 20 19 18 39 39 H 1.08999 * 110.39875 * 140.91352 * 20 19 18 40 40 H 1.09000 * 109.91242 * 333.50616 * 21 17 16 41 41 H 1.09002 * 109.91734 * 94.60399 * 21 17 16 42 42 H 1.09005 * 109.91653 * 333.50989 * 22 11 10 43 43 H 1.08999 * 109.92279 * 94.79999 * 22 11 10 44 44 H 1.08992 * 117.50169 * 359.97438 * 23 9 7 45 45 H 1.09000 * 117.50173 * 145.02777 * 23 9 7 46 46 H 1.09003 * 117.49806 * 214.97921 * 24 9 7 47 47 H 1.08997 * 117.49685 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0749 -1.1995 0.1452 9 6 1.2639 -2.4918 -0.1946 10 6 0.1444 -2.4625 -1.2371 11 7 0.6833 -1.9952 -2.5212 12 6 1.7828 -2.8772 -2.9897 13 6 1.8523 -2.5808 -4.5089 14 6 0.3660 -2.4000 -4.8941 15 1 -0.0344 -3.3278 -5.3029 16 6 0.2123 -1.2643 -5.9077 17 7 0.7970 -1.6718 -7.1922 18 6 0.2439 -2.9759 -7.6390 19 6 0.5342 -2.9815 -9.1608 20 6 0.2994 -1.5073 -9.5630 21 6 0.4600 -0.7042 -8.2588 22 6 -0.3500 -2.0427 -3.5784 23 6 1.0632 -3.3821 1.0334 24 6 2.0622 -3.7892 -0.0516 25 1 -0.4850 0.8368 -0.0730 26 1 -0.2655 -3.4651 -1.3582 27 1 -0.6430 -1.7856 -0.9055 28 1 2.7217 -2.6133 -2.5029 29 1 1.5377 -3.9245 -2.8129 30 1 2.2905 -3.4217 -5.0462 31 1 2.4144 -1.6669 -4.7010 32 1 -0.8455 -1.0403 -6.0447 33 1 0.7269 -0.3766 -5.5396 34 1 0.7583 -3.8010 -7.1463 35 1 -0.8289 -3.0232 -7.4517 36 1 -0.1603 -3.6391 -9.6836 37 1 1.5649 -3.2758 -9.3587 38 1 -0.7060 -1.3801 -9.9642 39 1 1.0414 -1.1907 -10.2960 40 1 -0.4740 -0.1966 -8.0180 41 1 1.2625 0.0257 -8.3651 42 1 -1.0907 -2.8059 -3.3396 43 1 -0.8322 -1.0695 -3.6705 44 1 1.4672 -3.0294 1.9823 45 1 0.1333 -3.9471 1.0989 46 1 1.7896 -4.6220 -0.6999 47 1 3.1232 -3.7040 0.1832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602776861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:46 Heat of formation + Delta-G solvation = 36.631695 kcal Electronic energy + Delta-G solvation = -22823.935228 eV Core-core repulsion = 19814.145634 eV Total energy + Delta-G solvation = -3009.789594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.39858 -38.07886 -36.08145 -32.91639 -31.94143 -30.24534 -28.96314 -28.45495 -25.74169 -24.94195 -23.71166 -21.49913 -21.06425 -20.87894 -20.33027 -19.19524 -18.82565 -16.36887 -16.11813 -15.89926 -14.85409 -14.60916 -14.40450 -14.09850 -13.79673 -13.60335 -13.22302 -13.13374 -12.69446 -12.41800 -12.25037 -11.74500 -11.56596 -11.52489 -11.23025 -11.17518 -10.96754 -10.85289 -10.82412 -10.74121 -10.62029 -10.40150 -10.36060 -10.12686 -10.01515 -9.91316 -9.16987 -8.91702 -8.53677 -8.38546 -7.90154 -7.20674 -5.85815 -3.87053 3.39753 3.47915 3.51739 3.97069 4.52749 4.55326 4.58261 4.80875 4.90496 5.11873 5.15062 5.18896 5.22643 5.36408 5.41573 5.55763 5.62198 5.67206 5.70247 5.73168 5.80945 5.85626 5.93391 5.95627 6.01900 6.08134 6.14033 6.21484 6.30895 6.43359 6.44927 6.57474 6.62564 6.73146 6.82157 6.83343 6.87168 6.90873 7.01348 7.07887 7.22052 7.40080 7.67938 8.04349 8.12131 8.28485 8.61474 9.07207 9.73949 11.18738 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.004593 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.619164 B = 6094.228197 C = 6870.319958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.087 3.913 3 Si 0.887 3.113 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.290 1.290 7 C -0.472 4.472 8 H 0.054 0.946 9 C 0.067 3.933 10 C 0.093 3.907 11 N -0.475 5.475 12 C 0.042 3.958 13 C -0.105 4.105 14 C -0.097 4.097 15 H 0.065 0.935 16 C 0.060 3.940 17 N -0.514 5.514 18 C 0.034 3.966 19 C -0.124 4.124 20 C -0.130 4.130 21 C 0.034 3.966 22 C 0.043 3.957 23 C -0.205 4.205 24 C -0.216 4.216 25 H 0.256 0.744 26 H -0.014 1.014 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.025 0.975 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.029 0.971 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -4.726 -16.118 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.115 4.115 3 Si 0.715 3.285 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.216 1.216 7 C -0.509 4.509 8 H 0.072 0.928 9 C 0.066 3.934 10 C -0.035 4.035 11 N -0.198 5.198 12 C -0.086 4.086 13 C -0.143 4.143 14 C -0.116 4.116 15 H 0.084 0.916 16 C -0.068 4.068 17 N -0.238 5.238 18 C -0.094 4.094 19 C -0.162 4.162 20 C -0.169 4.169 21 C -0.094 4.094 22 C -0.086 4.086 23 C -0.244 4.244 24 C -0.253 4.253 25 H 0.066 0.934 26 H 0.004 0.996 27 H 0.132 0.868 28 H 0.103 0.897 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.013 -4.063 -15.866 16.409 hybrid contribution -0.845 0.017 -0.136 0.857 sum -1.858 -4.046 -16.002 16.610 Atomic orbital electron populations 1.69833 1.05983 1.26175 1.49410 1.24716 0.94518 0.98420 0.93881 0.86645 0.80282 0.84352 0.77219 1.20000 1.20940 1.21622 1.20317 0.92779 0.89096 1.48733 0.92773 1.18906 0.93862 0.88856 0.91775 1.21914 0.98721 0.94876 0.87985 1.64676 1.06022 1.48156 1.00932 1.23182 0.97802 0.94068 0.93527 1.22431 0.94759 1.01475 0.95627 1.22073 0.97501 0.97156 0.94855 0.91615 1.22415 0.96755 0.98801 0.88859 1.64794 1.55001 1.02010 1.02030 1.23219 0.97803 0.93518 0.94817 1.22478 1.02082 0.96164 0.95504 1.22388 1.01556 0.95503 0.97412 1.22872 0.99965 0.95589 0.90983 1.22835 0.94724 1.00176 0.90894 1.22950 0.98443 1.07504 0.95467 1.22932 0.96543 1.01494 1.04318 0.93360 0.99612 0.86822 0.89722 0.95678 0.92414 0.90791 0.95064 0.89879 0.89974 0.93976 0.91405 0.90807 0.91812 0.91181 0.93949 0.90436 0.95257 0.91184 0.90488 0.92111 0.91974 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.36 10.90 55.43 0.60 -23.76 16 2 C 0.09 2.38 5.27 -17.82 -0.09 2.29 16 3 Si 0.89 21.56 29.55 -169.99 -5.02 16.53 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.47 -12.88 8.71 -34.44 -0.30 -13.18 16 8 H 0.05 1.50 7.83 -52.49 -0.41 1.09 16 9 C 0.07 1.65 1.26 -155.66 -0.20 1.45 16 10 C 0.09 2.19 4.07 -3.83 -0.02 2.17 16 11 N -0.47 -10.26 5.05 -230.45 -1.16 -11.43 16 12 C 0.04 0.82 5.05 -1.90 -0.01 0.81 16 13 C -0.10 -1.70 6.48 -24.87 -0.16 -1.86 16 14 C -0.10 -1.46 2.72 -89.26 -0.24 -1.70 16 15 H 0.07 0.92 6.47 -51.93 -0.34 0.59 16 16 C 0.06 0.83 4.12 -3.83 -0.02 0.82 16 17 N -0.51 -6.44 5.26 -230.45 -1.21 -7.65 16 18 C 0.03 0.37 5.10 -1.90 -0.01 0.36 16 19 C -0.12 -1.11 7.06 -24.87 -0.18 -1.29 16 20 C -0.13 -1.14 6.93 -25.37 -0.18 -1.32 16 21 C 0.03 0.37 6.70 -2.75 -0.02 0.35 16 22 C 0.04 0.78 6.36 -2.75 -0.02 0.76 16 23 C -0.20 -4.77 9.96 -26.73 -0.27 -5.04 16 24 C -0.22 -4.75 8.75 -26.72 -0.23 -4.99 16 25 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 26 H -0.01 -0.32 7.93 -51.93 -0.41 -0.73 16 27 H 0.11 2.99 6.02 -51.93 -0.31 2.68 16 28 H 0.08 1.79 7.77 -51.93 -0.40 1.39 16 29 H 0.03 0.48 7.40 -51.93 -0.38 0.09 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.27 7.77 -51.93 -0.40 0.87 16 32 H 0.03 0.42 7.81 -51.93 -0.41 0.02 16 33 H 0.08 1.28 8.00 -51.93 -0.42 0.87 16 34 H 0.08 0.91 7.52 -51.93 -0.39 0.52 16 35 H 0.04 0.46 8.02 -51.92 -0.42 0.04 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.04 0.45 7.57 -51.93 -0.39 0.06 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.52 7.67 -51.93 -0.40 0.13 16 43 H 0.07 1.31 7.68 -51.93 -0.40 0.91 16 44 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.06 1.28 7.59 -51.93 -0.39 0.88 16 47 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 355.26 15.07 5.35 5.35 Total: -1.00 -27.73 355.26 -12.19 -39.92 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.81 Total: 1.39 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -1.93 Total: -20.36 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -1.77 Total: -42.84 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.73 -12.19 -39.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602776861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.552 kcal (2) G-P(sol) polarization free energy of solvation -27.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds