Wall clock time and date at job start Fri Apr 10 2020 17:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.90630 * 2 1 4 4 C 1.53992 * 110.08412 * 121.20736 * 2 1 3 5 5 H 1.08997 * 110.31349 * 239.58766 * 4 2 1 6 6 N 1.46898 * 110.30504 * 1.65642 * 4 2 1 7 7 C 1.48537 * 111.00079 * 166.89438 * 6 4 2 8 8 C 1.54935 * 103.23119 * 159.72073 * 7 6 4 9 9 C 1.54592 * 102.91847 * 322.58514 * 8 7 6 10 10 C 1.47897 * 111.00149 * 284.28548 * 6 4 2 11 11 C 1.54599 * 105.13991 * 120.66927 * 4 2 1 12 12 C 1.54936 * 102.91686 * 21.96094 * 11 4 2 13 13 N 1.47904 * 109.91995 * 238.89912 * 2 1 3 14 14 C 1.46899 * 110.99861 * 94.60033 * 13 2 1 15 15 C 1.53006 * 109.46709 * 175.40077 * 14 13 2 16 16 C 1.50698 * 115.54841 * 54.94143 * 15 14 13 17 17 H 1.07998 * 119.99678 * 266.20843 * 16 15 14 18 18 C 1.37871 * 120.00040 * 86.21191 * 16 15 14 19 19 N 1.31520 * 120.00446 * 359.23808 * 18 16 15 20 20 Si 1.86806 * 119.99918 * 179.23440 * 18 16 15 21 21 H 1.48492 * 109.47191 * 269.99847 * 20 18 16 22 22 H 1.48495 * 109.46930 * 30.00167 * 20 18 16 23 23 H 1.48499 * 109.46860 * 149.99950 * 20 18 16 24 24 C 1.53004 * 117.49512 * 200.60580 * 15 14 13 25 25 C 1.52995 * 117.50058 * 269.26593 * 15 14 13 26 26 H 1.08997 * 109.46610 * 194.13895 * 1 2 3 27 27 H 1.08997 * 109.46933 * 314.14183 * 1 2 3 28 28 H 1.08998 * 109.46682 * 74.13995 * 1 2 3 29 29 H 1.09009 * 110.66564 * 278.15770 * 7 6 4 30 30 H 1.09000 * 110.66784 * 41.28075 * 7 6 4 31 31 H 1.08998 * 110.72452 * 204.22855 * 8 7 6 32 32 H 1.08997 * 110.72256 * 80.94360 * 8 7 6 33 33 H 1.09006 * 110.31105 * 263.03904 * 9 8 7 34 34 H 1.09004 * 110.30928 * 140.87369 * 9 8 7 35 35 H 1.08996 * 109.91900 * 333.51305 * 10 6 4 36 36 H 1.09010 * 109.91707 * 94.80797 * 10 6 4 37 37 H 1.08998 * 110.72150 * 140.31543 * 11 4 2 38 38 H 1.09003 * 110.72452 * 263.60176 * 11 4 2 39 39 H 1.09004 * 110.66518 * 204.14927 * 12 11 4 40 40 H 1.08998 * 110.66903 * 81.02532 * 12 11 4 41 41 H 1.09003 * 109.46899 * 55.40735 * 14 13 2 42 42 H 1.08997 * 109.47552 * 295.40492 * 14 13 2 43 43 H 0.97003 * 119.99263 * 354.74315 * 19 18 16 44 44 H 1.09002 * 117.49502 * 215.00139 * 24 15 14 45 45 H 1.08998 * 117.50077 * 0.03213 * 24 15 14 46 46 H 1.09001 * 117.49916 * 359.97438 * 25 15 14 47 47 H 1.08993 * 117.49831 * 144.97410 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0588 -0.7494 1.2370 5 1 2.6748 -0.0875 1.8457 6 7 0.9405 -1.2765 2.0303 7 6 1.4188 -2.2562 3.0392 8 6 0.2674 -2.2888 4.0754 9 6 -0.1930 -0.8139 4.1271 10 6 0.2800 -0.1981 2.7972 11 6 2.9124 -1.9083 0.6727 12 6 3.2708 -1.4131 -0.7510 13 7 2.0340 -0.7183 -1.1907 14 6 2.3167 0.2160 -2.2885 15 6 2.9418 -0.5464 -3.4586 16 6 2.1470 -1.7212 -3.9676 17 1 2.3484 -2.7132 -3.5911 18 6 1.1628 -1.5297 -4.9139 19 7 0.9073 -0.3196 -5.3614 20 14 0.1921 -2.9889 -5.5605 21 1 0.8794 -3.5526 -6.7501 22 1 0.0984 -4.0283 -4.5042 23 1 -1.1730 -2.5456 -5.9414 24 6 3.7413 0.2624 -4.4821 25 6 4.4674 -0.6561 -3.4959 26 1 -0.3632 -0.9965 0.2510 27 1 -0.3633 0.7157 0.7375 28 1 -0.3632 0.2809 -0.9886 29 1 1.5569 -3.2382 2.5865 30 1 2.3434 -1.9114 3.5021 31 1 0.6341 -2.6127 5.0494 32 1 -0.5417 -2.9337 3.7327 33 1 0.2734 -0.3012 4.9684 34 1 -1.2789 -0.7590 4.2044 35 1 0.9886 0.6067 2.9920 36 1 -0.5756 0.1835 2.2398 37 1 3.8131 -2.0501 1.2699 38 1 2.3304 -2.8287 0.6258 39 1 3.4928 -2.2551 -1.4066 40 1 4.1106 -0.7190 -0.7168 41 1 3.0097 0.9833 -1.9432 42 1 1.3885 0.6849 -2.6147 43 1 1.3570 0.4465 -4.9717 44 1 3.6925 -0.0554 -5.5236 45 1 3.8225 1.3374 -4.3216 46 1 5.0258 -0.1848 -2.6872 47 1 4.8962 -1.5781 -3.8883 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602830701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:52 Heat of formation + Delta-G solvation = 44.470897 kcal Electronic energy + Delta-G solvation = -23354.614356 eV Core-core repulsion = 20345.164695 eV Total energy + Delta-G solvation = -3009.449661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.89461 -37.89797 -36.15359 -32.29510 -31.64409 -31.29496 -28.99160 -28.50736 -25.18299 -25.05047 -24.16561 -21.88598 -21.17615 -21.08342 -20.10059 -19.19235 -19.02217 -16.69863 -16.15517 -15.90689 -15.22712 -14.36717 -14.14603 -14.04147 -13.69630 -13.60952 -13.26660 -12.94482 -12.85495 -12.38427 -12.17656 -11.93581 -11.71032 -11.57792 -11.36302 -11.25533 -11.00392 -10.86630 -10.72473 -10.64616 -10.55852 -10.51502 -10.36554 -10.29032 -10.11763 -9.99490 -9.32881 -8.41880 -8.33466 -8.29100 -8.10584 -7.49812 -6.14729 -3.85785 3.53293 3.59251 3.73960 3.97539 4.50138 4.57934 4.61126 4.67671 4.85909 4.97359 5.09077 5.19403 5.25312 5.38792 5.42993 5.52810 5.58046 5.62921 5.67480 5.71864 5.76796 5.88194 5.88806 5.92130 5.99601 6.04664 6.07573 6.11665 6.17831 6.29308 6.36358 6.40142 6.46912 6.56013 6.62417 6.63551 6.81949 6.90234 6.95739 7.04824 7.19853 7.33596 7.38435 7.74537 7.98076 8.45867 8.61679 9.06919 9.85779 11.24266 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.021064 B = 0.005070 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.936578 B = 5521.816977 C = 6002.191171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.071 3.929 3 H 0.034 0.966 4 C 0.072 3.928 5 H 0.040 0.960 6 N -0.496 5.496 7 C 0.034 3.966 8 C -0.123 4.123 9 C -0.131 4.131 10 C 0.027 3.973 11 C -0.119 4.119 12 C 0.050 3.950 13 N -0.475 5.475 14 C 0.093 3.907 15 C 0.032 3.968 16 C -0.539 4.539 17 H 0.051 0.949 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 1.067 2.933 21 H -0.292 1.292 22 H -0.288 1.288 23 H -0.287 1.287 24 C -0.181 4.181 25 C -0.200 4.200 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.030 0.970 41 H -0.001 1.001 42 H 0.068 0.932 43 H 0.272 0.728 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 -0.440 17.726 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.038 4.038 3 H 0.052 0.948 4 C -0.037 4.037 5 H 0.058 0.942 6 N -0.220 5.220 7 C -0.093 4.093 8 C -0.161 4.161 9 C -0.170 4.170 10 C -0.101 4.101 11 C -0.157 4.157 12 C -0.078 4.078 13 N -0.199 5.199 14 C -0.036 4.036 15 C 0.031 3.969 16 C -0.577 4.577 17 H 0.069 0.931 18 C -0.179 4.179 19 N -0.552 5.552 20 Si 0.897 3.103 21 H -0.220 1.220 22 H -0.215 1.215 23 H -0.213 1.213 24 C -0.219 4.219 25 C -0.238 4.238 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.048 0.952 41 H 0.017 0.983 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.780 -1.471 16.048 16.134 hybrid contribution 2.560 1.694 1.922 3.622 sum 1.780 0.224 17.970 18.060 Atomic orbital electron populations 1.21821 0.93696 1.02729 1.00348 1.22355 0.97325 0.94411 0.89753 0.94800 1.22687 0.90617 0.95905 0.94501 0.94224 1.64880 1.25077 1.11966 1.20090 1.23207 0.96119 0.97693 0.92310 1.22465 0.98528 0.96664 0.98456 1.22418 1.01403 0.96055 0.97093 1.23169 0.99762 0.93659 0.93507 1.22643 0.98090 0.98666 0.96327 1.23055 0.91598 0.98913 0.94269 1.64622 1.25569 1.25840 1.03822 1.21897 0.98593 0.91515 0.91549 1.19098 0.88101 0.96905 0.92807 1.21087 1.19428 0.91932 1.25248 0.93121 1.25626 0.95876 1.01843 0.94554 1.70702 1.43671 0.98949 1.41900 0.83571 0.76391 0.74712 0.75636 1.21955 1.21455 1.21339 1.22770 1.07497 0.94752 0.96869 1.22932 0.98118 1.00944 1.01765 0.90110 0.93764 0.93069 0.89883 0.94276 0.91472 0.90674 0.92001 0.91134 0.94288 0.89189 0.92183 0.89756 0.89339 0.95225 0.98289 0.91361 0.91695 0.89653 0.91983 0.92117 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.03 37.16 0.30 -1.86 16 2 C 0.07 1.22 3.02 -66.64 -0.20 1.02 16 3 H 0.03 0.59 7.66 -51.93 -0.40 0.19 16 4 C 0.07 1.06 2.56 -66.36 -0.17 0.89 16 5 H 0.04 0.56 7.74 -51.93 -0.40 0.16 16 6 N -0.50 -6.55 3.53 -220.88 -0.78 -7.33 16 7 C 0.03 0.38 5.52 -1.90 -0.01 0.37 16 8 C -0.12 -1.15 7.06 -24.87 -0.18 -1.32 16 9 C -0.13 -1.22 6.93 -25.38 -0.18 -1.39 16 10 C 0.03 0.30 5.52 -2.76 -0.02 0.29 16 11 C -0.12 -1.78 5.74 -24.87 -0.14 -1.92 16 12 C 0.05 0.91 5.04 -1.90 -0.01 0.90 16 13 N -0.47 -9.73 4.68 -222.57 -1.04 -10.77 16 14 C 0.09 2.09 4.74 -3.82 -0.02 2.07 16 15 C 0.03 0.77 0.47 -155.66 -0.07 0.70 16 16 C -0.54 -14.87 8.54 -34.44 -0.29 -15.16 16 17 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 18 C 0.03 0.71 5.41 -17.82 -0.10 0.62 16 19 N -0.92 -27.37 13.46 55.43 0.75 -26.62 16 20 Si 1.07 25.83 29.90 -169.99 -5.08 20.75 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C -0.18 -4.26 8.45 -26.69 -0.23 -4.48 16 25 C -0.20 -4.38 8.76 -26.69 -0.23 -4.62 16 26 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 27 H 0.04 0.63 5.68 -51.93 -0.29 0.33 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.94 7.45 -51.92 -0.39 0.55 16 30 H 0.04 0.42 8.02 -51.93 -0.42 0.00 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.44 7.53 -51.93 -0.39 0.05 16 36 H 0.09 1.06 5.57 -51.92 -0.29 0.77 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.32 7.28 -51.93 -0.38 0.95 16 39 H 0.09 1.79 7.78 -51.93 -0.40 1.38 16 40 H 0.03 0.53 7.38 -51.93 -0.38 0.15 16 41 H 0.00 -0.02 7.92 -51.93 -0.41 -0.43 16 42 H 0.07 1.69 8.03 -51.93 -0.42 1.27 16 43 H 0.27 8.05 6.30 -40.82 -0.26 7.80 16 44 H 0.08 2.17 8.14 -51.93 -0.42 1.75 16 45 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.06 1.21 7.60 -51.93 -0.39 0.81 16 47 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -29.33 348.72 -11.04 -40.38 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.60 Total: 2.24 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -1.54 Total: -23.90 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -1.08 Total: -44.72 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.33 -11.04 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602830701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.849 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds