Wall clock time and date at job start Fri Apr 10 2020 17:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.90630 * 2 1 4 4 C 1.53992 * 110.08412 * 121.20736 * 2 1 3 5 5 H 1.08997 * 110.31349 * 239.58766 * 4 2 1 6 6 N 1.46898 * 110.30504 * 1.65642 * 4 2 1 7 7 C 1.48537 * 111.00079 * 166.89438 * 6 4 2 8 8 C 1.54935 * 103.23119 * 159.72073 * 7 6 4 9 9 C 1.54592 * 102.91847 * 322.58514 * 8 7 6 10 10 C 1.47897 * 111.00149 * 284.28548 * 6 4 2 11 11 C 1.54599 * 105.13991 * 120.66927 * 4 2 1 12 12 C 1.54936 * 102.91686 * 21.96094 * 11 4 2 13 13 N 1.47904 * 109.91995 * 238.89912 * 2 1 3 14 14 C 1.46899 * 110.99861 * 94.60033 * 13 2 1 15 15 C 1.53006 * 109.46709 * 175.40077 * 14 13 2 16 16 C 1.50698 * 115.54841 * 54.94143 * 15 14 13 17 17 H 1.07998 * 119.99678 * 266.20843 * 16 15 14 18 18 C 1.37871 * 120.00040 * 86.21191 * 16 15 14 19 19 N 1.31520 * 120.00446 * 359.23808 * 18 16 15 20 20 Si 1.86806 * 119.99918 * 179.23440 * 18 16 15 21 21 H 1.48492 * 109.47191 * 269.99847 * 20 18 16 22 22 H 1.48495 * 109.46930 * 30.00167 * 20 18 16 23 23 H 1.48499 * 109.46860 * 149.99950 * 20 18 16 24 24 C 1.53004 * 117.49512 * 200.60580 * 15 14 13 25 25 C 1.52995 * 117.50058 * 269.26593 * 15 14 13 26 26 H 1.08997 * 109.46610 * 194.13895 * 1 2 3 27 27 H 1.08997 * 109.46933 * 314.14183 * 1 2 3 28 28 H 1.08998 * 109.46682 * 74.13995 * 1 2 3 29 29 H 1.09009 * 110.66564 * 278.15770 * 7 6 4 30 30 H 1.09000 * 110.66784 * 41.28075 * 7 6 4 31 31 H 1.08998 * 110.72452 * 204.22855 * 8 7 6 32 32 H 1.08997 * 110.72256 * 80.94360 * 8 7 6 33 33 H 1.09006 * 110.31105 * 263.03904 * 9 8 7 34 34 H 1.09004 * 110.30928 * 140.87369 * 9 8 7 35 35 H 1.08996 * 109.91900 * 333.51305 * 10 6 4 36 36 H 1.09010 * 109.91707 * 94.80797 * 10 6 4 37 37 H 1.08998 * 110.72150 * 140.31543 * 11 4 2 38 38 H 1.09003 * 110.72452 * 263.60176 * 11 4 2 39 39 H 1.09004 * 110.66518 * 204.14927 * 12 11 4 40 40 H 1.08998 * 110.66903 * 81.02532 * 12 11 4 41 41 H 1.09003 * 109.46899 * 55.40735 * 14 13 2 42 42 H 1.08997 * 109.47552 * 295.40492 * 14 13 2 43 43 H 0.97003 * 119.99263 * 354.74315 * 19 18 16 44 44 H 1.09002 * 117.49502 * 215.00139 * 24 15 14 45 45 H 1.08998 * 117.50077 * 0.03213 * 24 15 14 46 46 H 1.09001 * 117.49916 * 359.97438 * 25 15 14 47 47 H 1.08993 * 117.49831 * 144.97410 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0588 -0.7494 1.2370 5 1 2.6748 -0.0875 1.8457 6 7 0.9405 -1.2765 2.0303 7 6 1.4188 -2.2562 3.0392 8 6 0.2674 -2.2888 4.0754 9 6 -0.1930 -0.8139 4.1271 10 6 0.2800 -0.1981 2.7972 11 6 2.9124 -1.9083 0.6727 12 6 3.2708 -1.4131 -0.7510 13 7 2.0340 -0.7183 -1.1907 14 6 2.3167 0.2160 -2.2885 15 6 2.9418 -0.5464 -3.4586 16 6 2.1470 -1.7212 -3.9676 17 1 2.3484 -2.7132 -3.5911 18 6 1.1628 -1.5297 -4.9139 19 7 0.9073 -0.3196 -5.3614 20 14 0.1921 -2.9889 -5.5605 21 1 0.8794 -3.5526 -6.7501 22 1 0.0984 -4.0283 -4.5042 23 1 -1.1730 -2.5456 -5.9414 24 6 3.7413 0.2624 -4.4821 25 6 4.4674 -0.6561 -3.4959 26 1 -0.3632 -0.9965 0.2510 27 1 -0.3633 0.7157 0.7375 28 1 -0.3632 0.2809 -0.9886 29 1 1.5569 -3.2382 2.5865 30 1 2.3434 -1.9114 3.5021 31 1 0.6341 -2.6127 5.0494 32 1 -0.5417 -2.9337 3.7327 33 1 0.2734 -0.3012 4.9684 34 1 -1.2789 -0.7590 4.2044 35 1 0.9886 0.6067 2.9920 36 1 -0.5756 0.1835 2.2398 37 1 3.8131 -2.0501 1.2699 38 1 2.3304 -2.8287 0.6258 39 1 3.4928 -2.2551 -1.4066 40 1 4.1106 -0.7190 -0.7168 41 1 3.0097 0.9833 -1.9432 42 1 1.3885 0.6849 -2.6147 43 1 1.3570 0.4465 -4.9717 44 1 3.6925 -0.0554 -5.5236 45 1 3.8225 1.3374 -4.3216 46 1 5.0258 -0.1848 -2.6872 47 1 4.8962 -1.5781 -3.8883 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602830701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:51 Heat of formation + Delta-G solvation = 27.724788 kcal Electronic energy + Delta-G solvation = -23355.340521 eV Core-core repulsion = 20345.164695 eV Total energy + Delta-G solvation = -3010.175827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10215 -39.32093 -37.70909 -33.88893 -33.39398 -32.59372 -30.20253 -29.44855 -27.11159 -26.43014 -25.90449 -23.23784 -22.71511 -22.12377 -21.32131 -20.97731 -20.30110 -18.54375 -17.37498 -16.95174 -16.54734 -15.85197 -15.73209 -15.57904 -15.27540 -15.02387 -14.60686 -14.42743 -14.13042 -13.83903 -13.72077 -13.26337 -12.97734 -12.95167 -12.66150 -12.58098 -12.42139 -12.34734 -12.23698 -12.08006 -11.93057 -11.86190 -11.78284 -11.69908 -11.51111 -11.28318 -11.13355 -10.50656 -10.30831 -10.13870 -9.27705 -9.05364 -8.39686 -6.09963 1.55260 1.64799 1.81149 2.64443 2.95992 3.07071 3.33556 3.40821 3.53456 3.78070 3.80294 4.00227 4.07914 4.16679 4.21539 4.27493 4.33063 4.39688 4.43985 4.52465 4.53330 4.59780 4.64632 4.67774 4.77838 4.79083 4.82411 4.89278 4.93505 4.98988 5.03661 5.04761 5.07768 5.14306 5.15839 5.23131 5.30970 5.38235 5.44321 5.49195 5.62463 6.03179 6.16146 6.18561 6.33442 6.35941 6.45695 6.85897 7.67251 9.00229 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.021064 B = 0.005070 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.936578 B = 5521.816977 C = 6002.191171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.067 3.933 3 H 0.034 0.966 4 C 0.083 3.917 5 H 0.054 0.946 6 N -0.515 5.515 7 C 0.033 3.967 8 C -0.119 4.119 9 C -0.126 4.126 10 C 0.024 3.976 11 C -0.107 4.107 12 C 0.051 3.949 13 N -0.501 5.501 14 C 0.109 3.891 15 C 0.006 3.994 16 C -0.539 4.539 17 H 0.036 0.964 18 C -0.023 4.023 19 N -0.943 5.943 20 Si 1.107 2.893 21 H -0.278 1.278 22 H -0.278 1.278 23 H -0.289 1.289 24 C -0.185 4.185 25 C -0.171 4.171 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.017 0.983 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.012 0.988 42 H 0.034 0.966 43 H 0.263 0.737 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 -0.875 20.314 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.042 4.042 3 H 0.052 0.948 4 C -0.026 4.026 5 H 0.072 0.928 6 N -0.239 5.239 7 C -0.094 4.094 8 C -0.157 4.157 9 C -0.164 4.164 10 C -0.104 4.104 11 C -0.145 4.145 12 C -0.077 4.077 13 N -0.225 5.225 14 C -0.020 4.020 15 C 0.006 3.994 16 C -0.578 4.578 17 H 0.054 0.946 18 C -0.221 4.221 19 N -0.580 5.580 20 Si 0.932 3.068 21 H -0.205 1.205 22 H -0.203 1.203 23 H -0.216 1.216 24 C -0.223 4.223 25 C -0.208 4.208 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.036 0.964 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.030 0.970 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.053 -1.914 18.652 18.750 hybrid contribution 2.356 1.825 1.150 3.194 sum 2.303 -0.090 19.802 19.936 Atomic orbital electron populations 1.21737 0.93784 1.02826 0.99112 1.22435 0.97222 0.94571 0.89945 0.94839 1.22517 0.91020 0.95489 0.93598 0.92805 1.64813 1.24767 1.12951 1.21379 1.23257 0.97207 0.96778 0.92185 1.22457 0.97694 0.96654 0.98852 1.22404 1.01931 0.95874 0.96239 1.23188 0.99353 0.93464 0.94351 1.22561 0.99240 0.98179 0.94530 1.22997 0.90988 0.97957 0.95748 1.64521 1.27024 1.26136 1.04777 1.21556 0.96881 0.91795 0.91777 1.19147 0.89564 0.96793 0.93924 1.21285 1.19415 0.92381 1.24688 0.94578 1.26789 0.96934 1.03185 0.95216 1.70801 1.44817 0.99347 1.43073 0.83040 0.75231 0.72602 0.75942 1.20457 1.20348 1.21554 1.22679 1.08201 0.95827 0.95597 1.22890 0.96362 1.00306 1.01273 0.91022 0.91073 0.96390 0.90416 0.93331 0.89465 0.91263 0.90520 0.90515 0.93983 0.90039 0.89260 0.90717 0.91829 0.94509 0.97044 0.94731 0.92715 0.92199 0.90456 0.89367 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.03 71.98 0.58 -3.37 16 2 C 0.07 2.27 3.02 45.06 0.14 2.41 16 3 H 0.03 1.14 7.66 -2.39 -0.02 1.12 16 4 C 0.08 2.25 2.56 45.80 0.12 2.37 16 5 H 0.05 1.33 7.74 -2.39 -0.02 1.31 16 6 N -0.51 -12.51 3.53 -852.73 -3.01 -15.52 16 7 C 0.03 0.64 5.52 86.65 0.48 1.12 16 8 C -0.12 -1.85 7.06 31.80 0.22 -1.63 16 9 C -0.13 -1.95 6.93 31.47 0.22 -1.74 16 10 C 0.02 0.49 5.52 86.45 0.48 0.97 16 11 C -0.11 -2.98 5.74 31.80 0.18 -2.80 16 12 C 0.05 1.81 5.04 86.65 0.44 2.25 16 13 N -0.50 -20.54 4.68 -858.09 -4.02 -24.55 16 14 C 0.11 4.96 4.74 86.31 0.41 5.37 16 15 C 0.01 0.32 0.47 -52.93 -0.02 0.29 16 16 C -0.54 -30.37 8.54 25.60 0.22 -30.15 16 17 H 0.04 2.09 7.81 -2.91 -0.02 2.07 16 18 C -0.02 -1.33 5.41 84.65 0.46 -0.87 16 19 N -0.94 -57.89 13.46 21.45 0.29 -57.60 16 20 Si 1.11 52.81 29.90 68.60 2.05 54.86 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 C -0.18 -8.76 8.45 30.62 0.26 -8.50 16 25 C -0.17 -7.32 8.76 30.62 0.27 -7.05 16 26 H 0.07 2.53 7.00 -2.39 -0.02 2.51 16 27 H 0.07 1.97 5.68 -2.39 -0.01 1.96 16 28 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 1.58 7.45 -2.38 -0.02 1.57 16 30 H 0.05 0.86 8.02 -2.39 -0.02 0.84 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 0.84 7.53 -2.39 -0.02 0.82 16 36 H 0.08 1.77 5.57 -2.38 -0.01 1.76 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.24 7.28 -2.39 -0.02 2.22 16 39 H 0.06 2.55 7.78 -2.39 -0.02 2.53 16 40 H 0.04 1.24 7.38 -2.39 -0.02 1.22 16 41 H 0.01 0.49 7.92 -2.39 -0.02 0.47 16 42 H 0.03 1.78 8.03 -2.39 -0.02 1.76 16 43 H 0.26 16.14 6.30 -92.71 -0.58 15.55 16 44 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 45 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 46 H 0.09 3.29 7.60 -2.39 -0.02 3.27 16 47 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -64.34 348.72 0.85 -63.50 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 1.09 Total: 20.64 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 4.44 Total: -41.33 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -6.74 Total: -97.67 kcal Atomic # 14 Polarization: 52.81 SS G_CDS: 2.05 Total: 54.86 kcal Total: -64.34 0.85 -63.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602830701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.220 kcal (2) G-P(sol) polarization free energy of solvation -64.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds