Wall clock time and date at job start Fri Apr 10 2020 17:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.90390 * 2 1 4 4 C 1.53995 * 109.91805 * 238.69521 * 2 1 3 5 5 H 1.08998 * 110.30903 * 0.78294 * 4 2 1 6 6 N 1.46904 * 110.30987 * 122.85466 * 4 2 1 7 7 C 1.48535 * 110.99877 * 175.57780 * 6 4 2 8 8 C 1.54929 * 103.22686 * 159.72182 * 7 6 4 9 9 C 1.54598 * 102.92086 * 322.58362 * 8 7 6 10 10 C 1.47896 * 110.99655 * 292.97342 * 6 4 2 11 11 C 1.54594 * 105.13674 * 241.86693 * 4 2 1 12 12 C 1.54936 * 102.92427 * 21.95878 * 11 4 2 13 13 N 1.47903 * 109.91969 * 121.09979 * 2 1 3 14 14 C 1.46899 * 111.00001 * 333.51215 * 13 2 1 15 15 C 1.53003 * 109.47196 * 178.48988 * 14 13 2 16 16 C 1.50695 * 115.55874 * 78.59846 * 15 14 13 17 17 H 1.07997 * 120.00308 * 269.09373 * 16 15 14 18 18 C 1.37877 * 119.99888 * 89.10290 * 16 15 14 19 19 N 1.31518 * 119.99803 * 183.32425 * 18 16 15 20 20 Si 1.86797 * 120.00119 * 3.31508 * 18 16 15 21 21 H 1.48506 * 109.46746 * 84.78754 * 20 18 16 22 22 H 1.48497 * 109.47493 * 204.78868 * 20 18 16 23 23 H 1.48495 * 109.47154 * 324.78899 * 20 18 16 24 24 C 1.53000 * 117.49371 * 292.91310 * 15 14 13 25 25 C 1.53002 * 60.02778 * 252.51992 * 24 15 14 26 26 H 1.08995 * 109.47444 * 300.35009 * 1 2 3 27 27 H 1.08993 * 109.47317 * 60.35627 * 1 2 3 28 28 H 1.09007 * 109.46681 * 180.35143 * 1 2 3 29 29 H 1.09009 * 110.66081 * 278.15334 * 7 6 4 30 30 H 1.08998 * 110.66561 * 41.27956 * 7 6 4 31 31 H 1.08999 * 110.72410 * 204.22991 * 8 7 6 32 32 H 1.08994 * 110.87983 * 81.01232 * 8 7 6 33 33 H 1.09001 * 110.30755 * 263.04534 * 9 8 7 34 34 H 1.08997 * 110.39357 * 140.91999 * 9 8 7 35 35 H 1.09003 * 109.91858 * 333.50405 * 10 6 4 36 36 H 1.09001 * 109.91860 * 94.60737 * 10 6 4 37 37 H 1.09005 * 110.72413 * 140.31314 * 11 4 2 38 38 H 1.08996 * 110.72720 * 263.59986 * 11 4 2 39 39 H 1.08998 * 110.66882 * 204.15080 * 12 11 4 40 40 H 1.09000 * 110.66917 * 81.01446 * 12 11 4 41 41 H 1.09002 * 109.46829 * 58.48629 * 14 13 2 42 42 H 1.09008 * 109.47107 * 298.49128 * 14 13 2 43 43 H 0.97005 * 119.99708 * 179.97438 * 19 18 16 44 44 H 1.09000 * 117.49702 * 145.02195 * 24 15 14 45 45 H 1.08998 * 117.50546 * 0.02562 * 24 15 14 46 46 H 1.08999 * 117.49717 * 107.48531 * 25 24 15 47 47 H 1.09005 * 117.50130 * 252.47384 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7523 -1.2370 5 1 1.2225 -1.1061 -1.8457 6 7 2.9310 0.1198 -2.0304 7 6 3.5300 -0.6218 -3.1695 8 6 3.9521 0.5061 -4.1441 9 6 2.8067 1.5343 -3.9998 10 6 2.1664 1.2337 -2.6319 11 6 2.8537 -1.9493 -0.6727 12 6 2.2662 -2.1179 0.7510 13 7 2.0339 -0.7183 1.1907 14 6 1.0592 -0.6662 2.2885 15 6 1.5984 -1.4499 3.4868 16 6 2.6305 -0.7350 4.3202 17 1 3.6801 -0.8445 4.0908 18 6 2.2348 0.0590 5.3757 19 7 3.1303 0.7346 6.0622 20 14 0.4268 0.1751 5.8306 21 1 0.0679 -0.9546 6.7252 22 1 0.1739 1.4602 6.5303 23 1 -0.3988 0.1120 4.5979 24 6 1.7406 -2.9656 3.3334 25 6 0.6295 -2.3871 4.2120 26 1 -0.3634 0.5192 0.8868 27 1 -0.3633 0.5082 -0.8931 28 1 -0.3633 -1.0277 0.0063 29 1 4.3990 -1.1929 -2.8423 30 1 2.7915 -1.2753 -3.6339 31 1 4.0078 0.1318 -5.1663 32 1 4.9037 0.9439 -3.8428 33 1 2.0757 1.4008 -4.7973 34 1 3.2032 2.5495 -4.0170 35 1 1.1253 0.9398 -2.7659 36 1 2.2242 2.1129 -1.9903 37 1 2.6804 -2.8446 -1.2699 38 1 3.9172 -1.7155 -0.6259 39 1 2.9823 -2.6132 1.4066 40 1 1.3276 -2.6711 0.7169 41 1 0.1179 -1.1068 1.9599 42 1 0.8931 0.3716 2.5780 43 1 2.8519 1.2935 6.8045 44 1 2.5806 -3.4456 3.8354 45 1 1.4504 -3.4043 2.3787 46 1 -0.3916 -2.4450 3.8352 47 1 0.7384 -2.4870 5.2920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602830711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:53 Heat of formation + Delta-G solvation = 28.430211 kcal Electronic energy + Delta-G solvation = -23240.745378 eV Core-core repulsion = 20230.600141 eV Total energy + Delta-G solvation = -3010.145237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19482 -39.40389 -37.71368 -34.19944 -33.45946 -32.29845 -30.21200 -29.66247 -27.99571 -26.42222 -25.94715 -23.56981 -22.48627 -22.02752 -21.19584 -20.78945 -20.28228 -18.20893 -17.63831 -17.02424 -16.75017 -16.30126 -15.97893 -15.40196 -15.03736 -14.78894 -14.67302 -14.32449 -14.23380 -13.87131 -13.82611 -13.40717 -13.31643 -13.14946 -12.95413 -12.81436 -12.35197 -12.26013 -12.18559 -12.14137 -11.99704 -11.87487 -11.77841 -11.64438 -11.49060 -11.35668 -11.23526 -10.84800 -10.48377 -10.24039 -9.29336 -9.00068 -8.22464 -6.26029 1.35713 1.38198 1.50545 2.40577 2.94504 3.03322 3.12139 3.42982 3.57798 3.77134 3.86121 4.00689 4.04293 4.16446 4.21589 4.30900 4.38140 4.39614 4.42375 4.44623 4.49267 4.55911 4.59369 4.66771 4.68994 4.76025 4.84549 4.86478 4.94727 4.98184 5.02037 5.04714 5.08925 5.10840 5.14558 5.20727 5.25788 5.31040 5.35738 5.43987 5.59197 5.76898 6.03038 6.18780 6.26334 6.35833 6.46375 6.81218 7.40526 8.94465 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.026024 B = 0.004662 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.655258 B = 6005.185630 C = 6217.259542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.068 3.932 3 H 0.068 0.932 4 C 0.084 3.916 5 H 0.060 0.940 6 N -0.528 5.528 7 C 0.035 3.965 8 C -0.120 4.120 9 C -0.126 4.126 10 C 0.033 3.967 11 C -0.110 4.110 12 C 0.041 3.959 13 N -0.517 5.517 14 C 0.101 3.899 15 C -0.015 4.015 16 C -0.465 4.465 17 H 0.024 0.976 18 C 0.013 3.987 19 N -0.956 5.956 20 Si 0.946 3.054 21 H -0.268 1.268 22 H -0.303 1.303 23 H -0.240 1.240 24 C -0.166 4.166 25 C -0.204 4.204 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.262 0.738 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 -4.187 -22.331 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.040 4.040 3 H 0.086 0.914 4 C -0.025 4.025 5 H 0.078 0.922 6 N -0.253 5.253 7 C -0.092 4.092 8 C -0.158 4.158 9 C -0.164 4.164 10 C -0.095 4.095 11 C -0.148 4.148 12 C -0.086 4.086 13 N -0.241 5.241 14 C -0.028 4.028 15 C -0.017 4.017 16 C -0.503 4.503 17 H 0.043 0.957 18 C -0.183 4.183 19 N -0.597 5.597 20 Si 0.771 3.229 21 H -0.193 1.193 22 H -0.230 1.230 23 H -0.163 1.163 24 C -0.203 4.203 25 C -0.241 4.241 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.128 0.872 46 H 0.118 0.882 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.651 -3.630 -21.632 22.651 hybrid contribution -1.586 -0.084 0.458 1.652 sum -7.237 -3.714 -21.175 22.683 Atomic orbital electron populations 1.22383 0.95896 1.02108 1.02427 1.22460 0.93302 0.98634 0.89643 0.91425 1.22620 0.93918 0.92571 0.93435 0.92246 1.64797 1.30619 1.09400 1.20452 1.23245 0.99208 0.96357 0.90439 1.22467 0.98531 0.95327 0.99458 1.22388 0.98074 1.00200 0.95770 1.22876 0.96121 0.94837 0.95689 1.22564 1.00231 0.97093 0.94930 1.23361 0.99471 0.90154 0.95652 1.64708 1.42564 1.11667 1.05157 1.21801 0.91870 0.98704 0.90386 1.19311 0.97180 0.89455 0.95706 1.20365 0.91968 1.26630 1.11318 0.95738 1.25835 1.01851 0.94533 0.96044 1.70074 1.36176 1.31296 1.22161 0.85812 0.81096 0.76392 0.79599 1.19306 1.23019 1.16323 1.23083 0.99499 0.97139 1.00565 1.23120 0.95322 1.07687 0.97993 0.92993 0.90765 0.92115 0.90339 0.93028 0.89259 0.91459 0.90192 0.90778 0.93442 0.91778 0.89059 0.91269 0.90941 0.93127 0.94256 0.93778 0.92891 0.90869 0.87196 0.88231 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 7.66 71.98 0.55 -3.87 16 2 C 0.07 2.11 3.14 45.06 0.14 2.25 16 3 H 0.07 2.38 7.32 -2.39 -0.02 2.36 16 4 C 0.08 2.10 2.05 45.79 0.09 2.20 16 5 H 0.06 1.31 7.53 -2.39 -0.02 1.29 16 6 N -0.53 -12.82 5.00 -852.73 -4.27 -17.08 16 7 C 0.03 0.65 5.79 86.65 0.50 1.15 16 8 C -0.12 -1.86 7.06 31.80 0.22 -1.64 16 9 C -0.13 -1.98 6.93 31.48 0.22 -1.76 16 10 C 0.03 0.68 5.88 86.45 0.51 1.18 16 11 C -0.11 -2.83 5.88 31.80 0.19 -2.64 16 12 C 0.04 1.30 4.50 86.65 0.39 1.69 16 13 N -0.52 -19.65 5.32 -858.07 -4.57 -24.22 16 14 C 0.10 4.13 3.35 86.30 0.29 4.42 16 15 C -0.02 -0.71 0.92 -52.91 -0.05 -0.76 16 16 C -0.46 -27.39 9.45 25.60 0.24 -27.15 16 17 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 18 C 0.01 0.79 5.47 84.65 0.46 1.25 16 19 N -0.96 -62.15 13.96 21.45 0.30 -61.85 16 20 Si 0.95 46.07 24.84 68.60 1.70 47.77 16 21 H -0.27 -12.42 6.91 99.48 0.69 -11.73 16 22 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 23 H -0.24 -10.64 6.73 99.48 0.67 -9.98 16 24 C -0.17 -6.46 7.88 30.59 0.24 -6.22 16 25 C -0.20 -8.29 7.39 30.62 0.23 -8.06 16 26 H 0.05 1.50 6.65 -2.39 -0.02 1.49 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.48 7.64 -2.38 -0.02 1.46 16 29 H 0.08 1.52 7.85 -2.38 -0.02 1.50 16 30 H 0.05 0.85 8.02 -2.39 -0.02 0.83 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 0.91 7.67 -2.39 -0.02 0.89 16 36 H 0.06 1.50 7.92 -2.39 -0.02 1.48 16 37 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.07 2.00 7.82 -2.39 -0.02 1.98 16 39 H 0.07 2.55 6.53 -2.39 -0.02 2.53 16 40 H 0.05 1.42 6.88 -2.39 -0.02 1.40 16 41 H 0.04 1.41 6.03 -2.39 -0.01 1.40 16 42 H 0.04 2.02 7.77 -2.38 -0.02 2.01 16 43 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 44 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 45 H 0.11 3.53 5.49 -2.39 -0.01 3.51 16 46 H 0.10 3.46 8.10 -2.39 -0.02 3.44 16 47 H 0.07 3.15 6.63 -2.38 -0.02 3.14 16 Total: -1.00 -69.27 342.40 -1.74 -71.01 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.86 Total: 22.31 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 4.23 Total: -37.95 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -8.53 Total: -103.15 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.70 Total: 47.77 kcal Total: -69.27 -1.74 -71.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602830711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.441 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds