Wall clock time and date at job start Fri Apr 10 2020 17:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.36414 * 2 1 4 4 C 1.54375 * 110.41457 * 122.35242 * 2 1 3 5 5 C 1.54262 * 105.06253 * 142.74604 * 4 2 1 6 6 H 1.08992 * 110.32612 * 241.10763 * 5 4 2 7 7 N 1.46902 * 110.32198 * 118.99773 * 5 4 2 8 8 C 1.48530 * 110.99744 * 59.03464 * 7 5 4 9 9 C 1.54940 * 103.22473 * 159.71891 * 8 7 5 10 10 C 1.54593 * 102.92091 * 322.58356 * 9 8 7 11 11 C 1.47901 * 110.99934 * 176.42897 * 7 5 4 12 12 C 1.54384 * 105.14582 * 0.05327 * 5 4 2 13 13 N 1.48563 * 110.50745 * 237.58727 * 2 1 3 14 14 C 1.46897 * 111.00192 * 82.13160 * 13 2 1 15 15 C 1.53002 * 109.47266 * 169.99841 * 14 13 2 16 16 C 1.50697 * 115.54892 * 34.41438 * 15 14 13 17 17 H 1.08000 * 119.99974 * 356.76042 * 16 15 14 18 18 C 1.37874 * 120.00399 * 176.76032 * 16 15 14 19 19 N 1.31518 * 119.99473 * 7.40543 * 18 16 15 20 20 Si 1.86797 * 120.00360 * 187.41245 * 18 16 15 21 21 H 1.48502 * 109.47442 * 94.98321 * 20 18 16 22 22 H 1.48502 * 109.47106 * 214.98370 * 20 18 16 23 23 H 1.48501 * 109.47150 * 334.98189 * 20 18 16 24 24 C 1.52992 * 117.49741 * 248.74705 * 15 14 13 25 25 C 1.52992 * 117.49842 * 180.08426 * 15 14 13 26 26 H 1.09007 * 109.46730 * 299.09759 * 1 2 3 27 27 H 1.08995 * 109.47364 * 59.09706 * 1 2 3 28 28 H 1.08998 * 109.46900 * 179.10457 * 1 2 3 29 29 H 1.09001 * 110.32007 * 23.85359 * 4 2 1 30 30 H 1.08997 * 110.41147 * 261.68798 * 4 2 1 31 31 H 1.08997 * 110.66440 * 278.14908 * 8 7 5 32 32 H 1.09001 * 110.66773 * 41.28626 * 8 7 5 33 33 H 1.08995 * 110.72258 * 204.22305 * 9 8 7 34 34 H 1.08999 * 110.87650 * 81.01204 * 9 8 7 35 35 H 1.09001 * 110.31108 * 263.03759 * 10 9 8 36 36 H 1.09003 * 110.38991 * 140.91433 * 10 9 8 37 37 H 1.09002 * 109.91462 * 333.51409 * 11 7 5 38 38 H 1.09001 * 109.91693 * 94.60527 * 11 7 5 39 39 H 1.08998 * 110.40817 * 94.87469 * 12 5 4 40 40 H 1.08998 * 110.40811 * 217.31355 * 12 5 4 41 41 H 1.09004 * 109.47068 * 289.99432 * 14 13 2 42 42 H 1.08998 * 109.47434 * 49.99517 * 14 13 2 43 43 H 0.97005 * 119.99611 * 179.97438 * 19 18 16 44 44 H 1.09001 * 117.50408 * 359.97438 * 24 15 14 45 45 H 1.08998 * 117.50183 * 145.02045 * 24 15 14 46 46 H 1.09003 * 117.50177 * 214.97854 * 25 15 14 47 47 H 1.09003 * 117.50048 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0685 -0.7742 1.2222 5 6 3.3195 -1.5157 0.7077 6 1 3.1895 -2.5931 0.8091 7 7 4.5123 -1.0751 1.4433 8 6 4.3637 -1.3288 2.8992 9 6 5.8256 -1.3158 3.4123 10 6 6.6011 -2.0015 2.2642 11 6 5.7072 -1.8377 1.0210 12 6 3.4344 -1.1273 -0.7821 13 7 2.0505 -0.7459 -1.1747 14 6 2.0591 0.1014 -2.3747 15 6 2.8244 -0.6074 -3.4940 16 6 2.6886 -2.1079 -3.5251 17 1 2.1241 -2.6150 -2.7567 18 6 3.2849 -2.8333 -4.5346 19 7 4.0907 -2.2364 -5.3855 20 14 2.9483 -4.6638 -4.6938 21 1 1.8491 -4.8821 -5.6682 22 1 4.1749 -5.3532 -5.1685 23 1 2.5532 -5.2113 -3.3711 24 6 4.1675 -0.0106 -3.9191 25 6 2.9479 0.1188 -4.8350 26 1 -0.3633 0.4998 0.8980 27 1 -0.3634 0.5278 -0.8817 28 1 -0.3633 -1.0275 -0.0161 29 1 1.3244 -1.4878 1.5762 30 1 2.3395 -0.0834 2.0206 31 1 3.7835 -0.5356 3.3706 32 1 3.9028 -2.3008 3.0752 33 1 5.9156 -1.8891 4.3349 34 1 6.1768 -0.2944 3.5588 35 1 6.7501 -3.0582 2.4864 36 1 7.5610 -1.5095 2.1073 37 1 5.4093 -2.8169 0.6461 38 1 6.2420 -1.2901 0.2450 39 1 4.1115 -0.2818 -0.9033 40 1 3.7775 -1.9778 -1.3712 41 1 1.0341 0.2865 -2.6961 42 1 2.5451 1.0499 -2.1463 43 1 4.5106 -2.7469 -6.0955 44 1 4.5058 0.8871 -3.4017 45 1 4.9528 -0.7033 -4.2217 46 1 2.9313 -0.4889 -5.7398 47 1 2.4835 1.1013 -4.9200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602831329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:59 Heat of formation + Delta-G solvation = 45.431189 kcal Electronic energy + Delta-G solvation = -23351.915097 eV Core-core repulsion = 20342.507078 eV Total energy + Delta-G solvation = -3009.408019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.56217 -37.80306 -36.03598 -32.45020 -31.58400 -30.80891 -28.86289 -28.44423 -25.68889 -25.33091 -23.94778 -21.72199 -20.91485 -20.64472 -19.78959 -19.35808 -18.63521 -16.40249 -16.04168 -15.69126 -14.85185 -14.65645 -14.58609 -13.77419 -13.69692 -13.33252 -13.02542 -12.81577 -12.68372 -12.53799 -12.19392 -11.77392 -11.53165 -11.39957 -11.25615 -11.14982 -11.04086 -10.87606 -10.71399 -10.60776 -10.52882 -10.42526 -10.28539 -10.23987 -9.98748 -9.88371 -9.28200 -8.67331 -8.29132 -8.22194 -7.95159 -7.56253 -5.86880 -3.87185 3.33488 3.41287 3.45186 4.05769 4.47813 4.65617 4.68734 4.82412 4.98203 5.06438 5.13904 5.18690 5.34222 5.44546 5.52767 5.68991 5.72593 5.78252 5.80688 5.83597 5.90047 5.91763 5.98706 6.02792 6.10795 6.16265 6.21263 6.25607 6.28036 6.36947 6.40297 6.57408 6.61449 6.68408 6.79687 6.89734 7.10688 7.14620 7.25184 7.28156 7.38650 7.70386 7.77589 7.98307 8.15943 8.28967 8.67070 9.13125 9.66136 11.10116 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.006076 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.772350 B = 4607.344176 C = 5357.129424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 H 0.043 0.957 4 C -0.109 4.109 5 C 0.066 3.934 6 H 0.048 0.952 7 N -0.510 5.510 8 C 0.034 3.966 9 C -0.123 4.123 10 C -0.131 4.131 11 C 0.035 3.965 12 C 0.058 3.942 13 N -0.483 5.483 14 C 0.094 3.906 15 C 0.020 3.980 16 C -0.452 4.452 17 H 0.075 0.925 18 C 0.052 3.948 19 N -0.883 5.883 20 Si 0.891 3.109 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.274 1.274 24 C -0.190 4.190 25 C -0.190 4.190 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.101 0.899 41 H 0.060 0.940 42 H 0.012 0.988 43 H 0.255 0.745 44 H 0.035 0.965 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 2.353 15.196 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.055 4.055 3 H 0.061 0.939 4 C -0.148 4.148 5 C -0.043 4.043 6 H 0.066 0.934 7 N -0.235 5.235 8 C -0.093 4.093 9 C -0.161 4.161 10 C -0.169 4.169 11 C -0.093 4.093 12 C -0.070 4.070 13 N -0.207 5.207 14 C -0.034 4.034 15 C 0.020 3.980 16 C -0.490 4.490 17 H 0.093 0.907 18 C -0.148 4.148 19 N -0.523 5.523 20 Si 0.719 3.281 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.199 1.199 24 C -0.228 4.228 25 C -0.228 4.228 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.030 0.970 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.172 2.379 14.775 14.967 hybrid contribution 0.304 -0.987 -0.081 1.036 sum 0.476 1.392 14.695 14.768 Atomic orbital electron populations 1.21673 0.94610 1.02162 1.00563 1.22622 0.95514 0.95746 0.91593 0.93924 1.22403 0.96053 0.98906 0.97399 1.22701 0.89244 0.97066 0.95276 0.93365 1.64883 1.03011 1.53099 1.02540 1.23195 0.96772 0.99791 0.89580 1.22457 0.94988 1.01125 0.97513 1.22402 0.99092 1.00454 0.94941 1.22839 0.91743 0.97163 0.97516 1.23070 0.90391 1.01994 0.91510 1.65400 1.17877 1.36119 1.01289 1.21748 0.99218 0.92069 0.90366 1.19001 0.94746 0.93901 0.90370 1.20691 1.30158 0.89046 1.09072 0.90682 1.25052 0.95279 0.98201 0.96243 1.70049 1.29710 1.35090 1.17407 0.86596 0.77485 0.85714 0.78299 1.20959 1.21667 1.19873 1.22944 0.94835 0.99924 1.05116 1.22757 1.03305 0.98010 0.98774 0.93280 0.92867 0.91974 0.91556 0.91261 0.90348 0.94006 0.91501 0.90957 0.91803 0.91206 0.93439 0.90090 0.93668 0.88049 0.92135 0.96985 0.93441 0.94608 0.87145 0.87523 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.34 37.16 0.35 -1.53 16 2 C 0.05 0.88 2.88 -66.07 -0.19 0.69 16 3 H 0.04 0.71 7.82 -51.93 -0.41 0.31 16 4 C -0.11 -1.58 5.80 -25.35 -0.15 -1.72 16 5 C 0.07 1.06 2.49 -66.33 -0.17 0.89 16 6 H 0.05 0.80 7.97 -51.93 -0.41 0.39 16 7 N -0.51 -7.34 5.03 -220.85 -1.11 -8.45 16 8 C 0.03 0.40 5.71 -1.90 -0.01 0.39 16 9 C -0.12 -1.24 7.06 -24.87 -0.18 -1.41 16 10 C -0.13 -1.42 6.93 -25.38 -0.18 -1.60 16 11 C 0.04 0.49 6.16 -2.76 -0.02 0.47 16 12 C 0.06 1.13 4.50 -2.03 -0.01 1.12 16 13 N -0.48 -9.48 4.22 -221.91 -0.94 -10.41 16 14 C 0.09 2.01 5.05 -3.82 -0.02 1.99 16 15 C 0.02 0.50 1.69 -155.67 -0.26 0.24 16 16 C -0.45 -12.03 7.04 -34.44 -0.24 -12.28 16 17 H 0.08 2.03 7.03 -52.49 -0.37 1.66 16 18 C 0.05 1.42 5.24 -17.82 -0.09 1.32 16 19 N -0.88 -24.57 8.65 55.43 0.48 -24.09 16 20 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.19 -4.77 9.32 -26.70 -0.25 -5.02 16 25 C -0.19 -4.79 9.38 -26.70 -0.25 -5.04 16 26 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.05 0.77 7.76 -51.93 -0.40 0.37 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.90 7.86 -51.93 -0.41 0.49 16 30 H 0.07 0.92 6.64 -51.93 -0.35 0.57 16 31 H 0.08 0.86 7.21 -51.93 -0.37 0.48 16 32 H 0.04 0.48 8.02 -51.93 -0.42 0.07 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.04 0.94 7.92 -51.93 -0.41 0.52 16 40 H 0.10 2.27 6.46 -51.93 -0.34 1.94 16 41 H 0.06 1.27 7.78 -51.93 -0.40 0.87 16 42 H 0.01 0.25 7.64 -51.93 -0.40 -0.14 16 43 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 44 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 45 H 0.11 3.05 6.28 -51.93 -0.33 2.72 16 46 H 0.11 2.95 6.30 -51.93 -0.33 2.62 16 47 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -27.34 349.19 -11.66 -38.99 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.67 Total: 3.94 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -1.66 Total: -21.49 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -1.57 Total: -42.95 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.34 -11.66 -38.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602831329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.425 kcal (2) G-P(sol) polarization free energy of solvation -27.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds