Wall clock time and date at job start Fri Apr 10 2020 17:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00446 * 2 1 4 4 H 1.48497 * 109.47364 * 269.99521 * 3 2 1 5 5 H 1.48499 * 109.47075 * 29.99798 * 3 2 1 6 6 H 1.48504 * 109.47358 * 149.99612 * 3 2 1 7 7 C 1.37881 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99990 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00594 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47845 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00243 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00046 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99978 * 179.97438 * 11 10 9 14 14 N 1.46499 * 109.47122 * 180.02562 * 13 11 10 15 15 C 1.39681 * 119.99853 * 180.02562 * 14 13 11 16 16 C 1.38926 * 120.07473 * 5.87128 * 15 14 13 17 17 C 1.38084 * 119.92560 * 180.02562 * 16 15 14 18 18 C 1.38311 * 120.07318 * 359.72456 * 17 16 15 19 19 C 1.38268 * 120.14783 * 0.55384 * 18 17 16 20 20 C 1.38125 * 120.07186 * 359.44264 * 19 18 17 21 21 N 1.48004 * 120.03601 * 180.29782 * 20 19 18 22 22 O 1.21802 * 119.99968 * 37.45264 * 21 20 19 23 23 O 1.21795 * 120.00194 * 217.45573 * 21 20 19 24 24 H 0.97004 * 119.99587 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.47032 * 59.99574 * 9 7 2 26 26 H 1.09005 * 109.46910 * 300.00606 * 9 7 2 27 27 H 0.97001 * 119.99678 * 359.97438 * 10 9 7 28 28 H 1.09002 * 109.46899 * 59.99991 * 13 11 10 29 29 H 1.09002 * 109.47030 * 300.00171 * 13 11 10 30 30 H 0.96993 * 120.00010 * 0.02562 * 14 13 11 31 31 H 1.08003 * 120.03982 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.96204 * 179.97438 * 17 16 15 33 33 H 1.08003 * 119.92603 * 180.27557 * 18 17 16 34 34 H 1.07995 * 119.96134 * 179.72323 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 7 3.9998 -2.5755 0.0010 11 6 5.3248 -2.8218 0.0009 12 8 6.1130 -1.9000 0.0005 13 6 5.8271 -4.2426 0.0014 14 7 7.2921 -4.2427 0.0018 15 6 7.9904 -5.4524 0.0018 16 6 7.3028 -6.6532 -0.1217 17 6 7.9962 -7.8473 -0.1209 18 6 9.3742 -7.8485 -0.0030 19 6 10.0612 -6.6555 0.1258 20 6 9.3737 -5.4574 0.1256 21 7 10.1105 -4.1805 0.2570 22 8 11.1932 -4.0437 -0.2840 23 8 9.6342 -3.2666 0.9060 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8752 -0.6805 -0.8888 27 1 3.3694 -3.3127 0.0010 28 1 5.4636 -4.7567 -0.8884 29 1 5.4638 -4.7561 0.8916 30 1 7.7771 -3.4027 0.0022 31 1 6.2270 -6.6528 -0.2174 32 1 7.4622 -8.7812 -0.2164 33 1 9.9146 -8.7836 -0.0071 34 1 11.1368 -6.6601 0.2221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427615837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:16 Heat of formation + Delta-G solvation = -9.909927 kcal Electronic energy + Delta-G solvation = -20704.159168 eV Core-core repulsion = 17219.426184 eV Total energy + Delta-G solvation = -3484.732985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.23665 -40.02334 -39.14098 -36.66596 -35.72786 -34.49752 -32.52647 -32.21044 -30.65063 -28.63113 -26.85148 -26.16870 -23.05473 -22.46348 -21.82437 -20.22555 -19.42574 -18.71200 -18.20432 -17.43873 -17.16809 -16.47074 -15.79162 -15.72062 -15.43338 -15.08211 -14.56371 -14.37982 -14.11267 -13.77000 -13.13766 -12.94901 -12.71931 -12.43036 -12.15459 -11.96581 -11.59306 -11.13695 -11.13006 -11.08050 -10.85657 -10.74277 -10.05431 -9.84872 -9.64139 -9.56315 -8.88363 -8.39184 -8.12624 -6.29945 -4.33546 -0.05353 0.87508 1.09978 1.40317 2.71362 2.86357 3.08784 3.21857 3.29141 3.37091 3.71760 4.07371 4.26348 4.35130 4.62159 4.66147 4.77299 4.92743 5.04080 5.05085 5.09037 5.19293 5.40174 5.61953 5.86939 6.02540 6.26828 6.57072 6.68046 6.93446 6.96749 7.19457 7.25862 7.61271 7.93701 8.32132 8.54840 8.70211 9.29080 10.81700 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029557 B = 0.003480 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.098749 B = 8044.288485 C = 8927.340315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.696 5.696 11 C 0.493 3.507 12 O -0.545 6.545 13 C 0.095 3.905 14 N -0.710 5.710 15 C 0.284 3.716 16 C -0.201 4.201 17 C -0.023 4.023 18 C -0.181 4.181 19 C -0.014 4.014 20 C -0.123 4.123 21 N 0.035 4.965 22 O -0.160 6.160 23 O -0.169 6.169 24 H 0.269 0.731 25 H 0.029 0.971 26 H 0.023 0.977 27 H 0.399 0.601 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.423 0.577 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.190 -18.702 -0.293 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.586 4.586 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.344 5.344 11 C 0.276 3.724 12 O -0.424 6.424 13 C -0.033 4.033 14 N -0.341 5.341 15 C 0.171 3.829 16 C -0.224 4.224 17 C -0.042 4.042 18 C -0.201 4.201 19 C -0.033 4.033 20 C -0.212 4.212 21 N 0.552 4.448 22 O -0.378 6.378 23 O -0.379 6.379 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.233 0.767 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.267 0.733 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.946 -18.385 -0.332 23.696 hybrid contribution 0.294 1.179 0.012 1.215 sum 15.240 -17.206 -0.320 22.987 Atomic orbital electron populations 1.69871 1.06225 1.27590 1.48984 1.24785 0.94807 0.99220 0.93699 0.86821 0.80605 0.83177 0.79142 1.19785 1.20759 1.18448 1.21040 0.88278 0.95320 1.53913 0.90151 1.19578 0.95461 0.78012 0.97139 1.46103 1.05043 1.11626 1.71675 1.20217 0.83916 0.90034 0.78214 1.90716 1.55274 1.45584 1.50821 1.21326 0.80697 0.97179 1.04110 1.45090 1.05932 1.06596 1.76480 1.17492 0.87713 0.88113 0.89536 1.20801 1.00997 0.89758 1.10825 1.21304 0.94166 0.97938 0.90803 1.20896 0.94390 0.97237 1.07626 1.20712 1.00801 0.89447 0.92381 1.20474 0.90461 0.84428 1.25864 1.43530 1.00658 1.02484 0.98117 1.94515 1.08479 1.87850 1.46908 1.94566 1.70800 1.33977 1.38607 0.92124 0.95331 0.95886 0.76658 0.88514 0.88267 0.73273 0.83650 0.84190 0.84181 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.96 55.43 0.77 -25.04 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.55 -14.46 9.83 -34.44 -0.34 -14.80 16 8 H 0.08 2.19 7.84 -52.49 -0.41 1.77 16 9 C 0.22 5.17 4.50 -5.20 -0.02 5.15 16 10 N -0.70 -12.82 5.55 -61.47 -0.34 -13.17 16 11 C 0.49 8.58 7.90 -10.99 -0.09 8.49 16 12 O -0.55 -11.89 15.67 5.56 0.09 -11.80 16 13 C 0.09 1.12 5.44 -5.19 -0.03 1.09 16 14 N -0.71 -9.62 5.48 -59.81 -0.33 -9.95 16 15 C 0.28 3.27 6.61 -83.79 -0.55 2.72 16 16 C -0.20 -1.61 9.32 -39.38 -0.37 -1.98 16 17 C -0.02 -0.14 10.04 -39.61 -0.40 -0.54 16 18 C -0.18 -1.15 10.04 -39.54 -0.40 -1.55 16 19 C -0.01 -0.12 9.66 -39.61 -0.38 -0.51 16 20 C -0.12 -1.50 6.51 -79.76 -0.52 -2.02 16 21 N 0.04 0.53 4.29 34.06 0.15 0.68 16 22 O -0.16 -2.46 18.95 -29.46 -0.56 -3.02 16 23 O -0.17 -2.90 16.75 -29.46 -0.49 -3.39 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.72 7.20 -51.92 -0.37 0.34 16 26 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 27 H 0.40 6.15 8.32 -40.82 -0.34 5.81 16 28 H 0.10 0.87 7.73 -51.93 -0.40 0.47 16 29 H 0.10 0.92 8.13 -51.93 -0.42 0.50 16 30 H 0.42 6.97 5.04 -40.82 -0.21 6.76 16 31 H 0.15 0.87 6.73 -52.48 -0.35 0.51 16 32 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 33 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 34 H 0.14 1.07 8.01 -52.49 -0.42 0.65 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -33.41 305.17 -7.31 -40.72 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -3.33 Total: 5.85 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.19 Total: -1.85 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.25 Total: -47.48 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.96 Total: -18.21 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.41 -7.31 -40.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427615837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.806 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds